| mature miRNA: GAATCTTGATGATGCTGCAT species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164389101|gb|DB936483.1|DB936483 DB936483 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_046_E1 GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GAGTGCCCAGTTTCTTTGTGAATCAGAGATTCAGAGAGAGCGGGGAGAGGAAGAGGATACCAAGTTTTGAAGTCTTAGGGTTAGGGTTAGAGTTAGGGTTAGAGTTAGGGCTTTGTTGATAAAGATGACGGATGTGATATTGCATATATACGATGTGACGAATAGTGGATCGGAGAAGACCAACAACACCATTATGCAGATCAACAAGATTTTCAAGGACGGTATTGGCTTCGGCGGAATCTTTCACAGCGCTGTTCAGGTTTATGGAGATGATGAATGGTCTTTTGGGTTTTGCGAACACGGAACTGGAGTTTTTAATTGCCCTTCTGGGAAGAACCCAATGTACACATACCGTGAGAGCATTGTACTAGGAACAACTAACTTCTCTATCTTTAAGGTGAATCAGATATTGCGGGAACTGAGTAGAGAATGGCTTGGAAGTTCATATGACTTGCTATCCAAGAACTGCAATCACTTTTGTGATGAGTTCTGTGAA | |||||||||
gi|119016277|gb|DV451568.1|DV451568 CV02007B1D08.f1 CV02-normalized library Manihot esculenta cDNA clone CV02007B1D08.f1, mRNA s GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GCTTGGCTTTAACCTGTTCCAACAGAAGTCGTCCGAGCCGTGGATCCACAGCTGGAGACTGTGAACAAGAACCTTGAAGCCTATTATGATGCATGGGACAAGTTTATAAATGCATGGATAGTCATCAAGATTCAGGATCCCAGTTATGTCTACCAGTGGCGTTTACAGGCAGAGATTGCCATGAGGGAGGCAGGCAATCCTGGGATGACTGACGAGGAGGTTAGAGATTTTGTTTCTCGTTACCTGCCAGCATACAAGGCATATCTTCCCACCCTGTATGCTGAGGGACCAAGCGGCTCAGATCCTGAGAATGTCCTCCTCATCGACATCGACGAAGGCAGGAACCCAATTCTAGGTAGTTAGGTTCAGATTACTGATCATCTTCATTTCCCAATTTTGATTTCTTTGAAATAACTAATTTATGTTGGGTTTTTGTTATAAACACTACCTGGAAATTAGTCACTTGTAAATTATCTAATGTTCTTCAAATAAGTAGAAAATTTTCGATGAAAAAAAAAAAAAAAAAATGC | |||||||||
gi|164392772|gb|DB932384.1|DB932384 DB932384 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_035_B1 GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGTCTTCCCTTCTGTCTAGGGTTTTAGGCATTGAGTATCAGTCACAGGGAGCAATCAATTAACCAGGGAAATGGCGGCTGAGAATGGAGATATGGAAGTGAAGGAATCGACGAAGAAGCAGAAGCACAAGGGAAAGCATGACAAGCCGAAGCCGTGGGACGAGGACCCAAACATCGACCATTGGAAGATTGAAAAATTCGATGCCTCTTGGAATGAAGGCGGCATGCTCGAAGTCAGTTCATTCTCCACTATTTTCCCTACATACAGAGAAAAATACTTGCAAGAAGTATGGCCAATGGTGAAATCTGCTTTGAAGGAATATGGCATTGCATGTGAGTTGAACCTGGTTGAGGGATCAATGACTGTTTCAACTACTAGAAAAACTAGGGACCCCTATATCATTGTCAAAGCGAGGGATCTCATTAAGCTTTTATCAAGAAGTGTTCCTGCACCTCAGGCAATCAGAATTCTGAATGATGAAATGCAGTGCGACATCATCAAGATTGGGAATTTG | |||||||||
gi|219216567|gb|FG805158.1|FG805158 K024H12 Cassava root 210-day-old plants cDNA library Manihot esculenta cDNA, mRNA sequence GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ACTAATGGCTTAGCATGCTCCATGTATCTCTCTCTCGATGACGGCTTCTGGAGTGGGAGCTTCAGCGAATTGTATAAGCCCCCAAAAATTGTGGAAACTAAAACTTTAATAGAGACACTGGAAAATGCCTCCACCATCATCTTTCATGCCTGGTGATCCTTCTATGACGCACATGCCAATGAATGGCAGCAATATTGGAGATGACCTTCATGAGGTGGAACTTTAGAAGTTGTAAATACCAAGTTTTGTTCCTTGTGATCCAATACAGTACTTGGGATGGGCATCGCCATGCACATCTCGAAAAGGCCCAATGTTTGCACCAGCATCAGGATTCAGAAAAGAAAGTAAAATCTGATTTTCACACAATTTCCCGTGTCAACTCTCTCGCCTCTTAAATGTAAGTGGAAATGTGGTCGGCATATATTTTATTGCAAACTAAGCATCGGCTTTATTTTAATCTCACAGGAATTGCAATCTTCAAATGCTTGAGGAGCTGGTATCAGTACTAATTAACAGCAAAACAAAGGCATCCTTCACAGGCATTGTTGTACCGTTCATTTGTTCATTAGGTTGAGAACCAGGAAATGTCTGGTGAGCATGATGGCAGCAT | |||||||||
gi|56919971|gb|CK644308.1|CK644308 si.01.L5.5 MCol1522 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GAATGATGAAATGCAGTGCGACATCATCAAGATTGGGAATTTGGTCCGCAATAAGGAGCGATTTGTTAAACGACGACAGCATCTTGTGGGTCCAAACTCTTCAACTTTGAAGGCCCTTGAGATTTTGACAGGCTGCTACATCTTAGTTCAGGGTAACACTGTTGCTGCTATGGGCTCATTCAAAGGTCTGAAACAAGTGAGAAGGATTGTGGAAGACTGCATTCAGAATAAAATGCATCCTGTGTACCATATCAAGATTCTCATGATGAAGAAAGAACTTGAAAAGGATCCAGCACTTAAAAATGAGAACTGGGACAGGTTTCTTCCCAAGTTTAAGAAGAAAAATGTCAAACAAAATAAGGTTAAGAGCAAAGAAAAGAAACCATATACACCATTCCCTCCTCCTCAACCACCTAGCAAGGTTGATATGCAACTTGAGACAGGAGAAT | |||||||||
gi|119012139|gb|DV451954.1|DV451954 CV02008B2A07.f1 CV02-normalized library Manihot esculenta cDNA clone CV02008B2A07.f1, mRNA s GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CTTTCTGGTGAGCCTAACCATGGTGATGCTCAAAGCTCTGTTCAGAAAATCATACATGAAATCATGATGTCCAACCAACTTAATGGCACGGGTGGTATGGTTGGTGTTGGTTCTTTGGGAAATTAAATGAAAAATGTTAATGGGATCTTGCCAACGTGTAACAATGCGGTTCTCAATGGGGGAAATGGACTGGTGGGGAATGGAGCTGTCAATAATTCTGGAATGGGGGGTGGTGGATTTGGCACCATGGGCAATGGACTTGGACAGTCTGCCATGGTTAATGGAATTAGAGCTGCAATGGGCAATAACTCGGTGATAAATGGTCGTGTGAGTGTTCCATCGATGGTTCGAGACCAAACCATGAATCATCAACAAGATTTGGGGAACCAACTGCTTAGTGGGTTAGGAGCAGTTAACGGATTTAATAATCTTCCATTTGATTGGAAACCATCCCCTTGAAGGCTCTATCACTGATACTGGTGTTTCAGTTCTTGATTGCAGCTGCTTGTGCAGCGTGAGTGTGGGCAGAATTTCCTACA | |||||||||
gi|119019087|gb|DV456626.1|DV456626 CV02022A1E11.f1 CV02-normalized library Manihot esculenta cDNA clone CV02022A1E11.f1, mRNA s GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GTCACAGGGAGCAATCCATTGACCAGGGAAATGGCGGCTGAGAATGGAGATATGGAAGTGAAGGAATCGACGAAGAAGCAGAAGCACAAGGGAAAGCATGACAAGCCGAAGCCGTGGGACGAGGACCCAAACATCGACCATTGGAAGATTGAAAAATTCGATGCCTCTTGGAATGAAGGCGGCATGCTCGAAAAAAATACTTGCAAGAAGTATGGCCAATGGTGAAATCTGCTTTGAAGGAATATGGCATTGCATGTGAGTTGAACCTGGTTGAGGGATCAATGACTGTTTCAACTACTAGAAAAACTAGGGACCCCTATATCATTGTCAAAGCGAGGGATCTCATTAAGCTTTTATCAAGAAGTGTTCCTGCACCTCAGGCAATCAGAATTCTGAATGATGAAATGCAGTGCGACATCATCAAGATTGGGAATTTGGTCCGCAATAAGGAGCGATTTGTTAAACGACGACAGCATCTTGTGGGTCCAAACTCTTCAACTTTGAAGGCCCTTGAGATTTTGACAGGCTGCTACATCTTAGTTCAGGGTAACACTGTTGCTGCTATGGGCTCATTCAAAGGTCTGAAACAAGTAAGAAGGATTGTGGAAGACTGCATTCAGAATAAAATGCATCCTGTGTACCATATCAAGATTCTCATGATGAAGAAAGAACTTGAAAAGGATCCAGCACTTAAAAATGAGAACTGGGACAGGTTTCTTCCCAAGTTTAAGA | |||||||||
gi|119009641|gb|DV447031.1|DV447031 CV01020B2E07.f1 CV01-normalized library Manihot esculenta cDNA clone CV01020B2E07.f1, mRNA s GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CCACTCNNGTCTTTGCTCTTGATTATCTCTTCAAAAAAACTGGCAGNANNNTCTGCAACATTATCAATAGATGATTTTTACTGGACAGCAGAGGGCCAGGCTAAACTGAGAGAAGCAAATCCAGGAAATGCGCTTTTAGAGTTCCGCGGAAATGCTGGGAGCCATGATCTTTCATTCTCCATGGAAACCCTAACTGCTTTAAAAAAACTGACAAAAGAAGGTATAAAGATGAAGCTACCTCGATATGATAAATCTGCATACAGTGGGAGAGGTGACAGAGCTGATCCTTCACTGTGGCCAGAGATTGAAGGTCCATTAACAGTGATTCTTTTTGAAGGCTGGATGCTTGGCTTTAAACCTGTTCCAACAGAAGTCGTCCGAGCCGTGGATCCACAGCTGGAGACTGTGAACAAGAACCTTGAAGCCTATTATGATGCATGGGACAAGTTTATAAATGCATGGATAGTCATCAAGATTCAGGATCCTAGTTATGTCTACCAGTGGCGTTTACAGGCAGAGATTGCCATGAGGGAGGCAGGCAATCCTGGGATGACTGACGAGGAGGTTAGAGATTTTGTTTCTCGTTACCTGCCAGCATACAAGGCATATCTTCCCACCCTGTATGCTGAGGGACCAAGCGGCTCAGATCCTGAGAATGTCCTCCTCATCGACATCGACGANNGCAGGAACCCAATTCTAGGTAGTTAGGTTCAGATTACTGATCATCTTCATTTCCCAATTTTGATTTCT | |||||||||
gi|119011754|gb|DV451089.1|DV451089 CV02006A1H03.f1 CV02-normalized library Manihot esculenta cDNA clone CV02006A1H03.f1, mRNA s GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ATTTGGCACCATGGGCAATGGACTTGGACAGTCTGCCATGGTTAATGGAATTAGAGCTGCAATGGGCAATAACTCGGTGATAAATGGTCTTGTGAGTGTTCCATCGATGGTTCGAGACCAAACCATGAATCATCAACAAGATTTGGGGAACCAACTGCTTATTGGGTTAGGAGCATTTAACGGATTTAATAATCTTCCATTTGATTGGAAACCATCCCCTTGAAGGCTCTATCACTGATACTGGTGTTTCAGTTCTTGATTGCAGCTGCTTGTGCAGCGTGAGTGTGGGCAGAATTTCCTACAAGCCCTGTGAAGATGGCATCACACGGCGGAATAGTTGAGGGCTAACTTCCCACTTTGTACTAATTTCAGGGAAAAGCAAAACATATAGCATAGTGTTTTATCAATGAAATGTTAAAAGTCTCTTCAAGTTGCTTCATTTTTCTTCTAATTGTTCTCCTGATTTATGATCCAATACAACCTCTTTTCCCACTAACAGTCTAAGAATGGGATTCAGGGAGGAAATTTGTCTGGTTGAAAGCTCTTTTCCTTGT | |||||||||
gi|164400158|gb|DB951894.1|DB951894 DB951894 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_041_N1 GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): AATGACAATGTTCTCTACCGCAGCATCATCAGGATTCACTTTTTCAGCTACACCTCCCTCTGCTGCCACTCTTCCAGCGAAAACTCTCAACCAAGCAGCCCAAAATTTATGTTTTACGCCACCTGCTACCATGACTCCTAGTAGCTCTCACTTCTATTATCCAGAGAAGCGTCCACGGGCTCCACCATAACTATTCCCTCTGCACTGG | |||||||||
gi|56920704|gb|CK645041.1|CK645041 si.04.I16.5 MCol1522 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GTGGGTTTCCTTTGGTTCAAGGTGGGTAATGGTATTCTTCTAGGGTTGGGGTTTGGCGATCTGGTTGCTTGATGAGATCTCAGAAAAACCATTGATCAGTCAGTATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGGTGGCTCTTCTTACTTAAAAGGTTTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATATCTGACTACAATATGGGGACTTGTTTACTTACCTTATCAAAAGATCATAATTCGCCAGGGATACGGAGGAAATGAGTTCCGGGTTTGCTGGATCAAGGTATTAAAGAACTACTTTAAGTTGCTCGATTATTACAATGAAGGTGATGCCTCTTTTTCTTTAACTTGTCCATAATTTCATGCTTTTTCTTCACAGTGCTTAATTTCAGATTACTGTATCTAAGATTGAATAAACAGC | |||||||||
gi|56922630|gb|CK646967.1|CK646967 c.13.D14.5 CM523-7 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GTTTTAATTTGCGCCGCTTTTCTGCCTCAGTAGTTGCAGAATCCCGTTAACGTGCGCCATGGGTCTGCTTGACCAGCTGTGGGACGATACTGTTGCGGGGCCTCCACCGGATAACGGCCTTGGCAAGCTGCGGAAGCATTCGACCTTCAACTTCCGGTCATCCTCTGGCAAGGGTATGCAGCGTTTTTGCTTACTTAGGCCCATGGAGGATGATCTATAGAACGTTAATTTTGCAAAACGGGAGGCCTATATAAAACTATATATCGAGATCGCAAAAACTTGTGTTCATCTCAATCGGAGCGCAGCTTCATCGAGATTCAACATGTTTTGTTTTCATAAGTTATTCGATTAATGATTCAATTATCGCAACATTAATTACAAATCCAGTGATTTTTAACTC | |||||||||
gi|164400025|gb|DB942098.1|DB942098 DB942098 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_011_D1 GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TTTTGAAGGCTGGATGCTTGGCTTTGATAATTTACAAACAGATAATTTCCGAGCCGTGGATCTACAGCTGACGACTGTGAACAAGAACCTTGAAGCCTATTATGATGCATGGGACAAGTTTATAAATGCATGGATAGTCATCAAGATTCAGGATCCCAGTTATGCCTACCAGTGGCGTTTACAGGCAGAGATTGCCATGAGGGAGGCAGGCAATCCTGGGATGACTGACGAGGAGGTTAGAGATTTTGTTTCTCGTTACCTGCCAGCATACAAGGCATATCTTCCCACCCTGTATGCCGAGGGACCAAGCGGCTCAGATCCTGAGAATGTCCTCCTCATCGACATCGACGAAGGCAGGAACCCAATTCTAGGTAGTTAGGTTCAGATTACTGATCAATCTTCATTTCCCAATTTTGATTTCTTTGAAATAACTAATTTATGTTGGGTTTTTGTTATAAACACTACCTGGAAATTAGTCACTTGTAAATTATCTAATGTTCTTCAAATAAGTAGAAAATTTTCG | |||||||||