| mature miRNA: GAGAGCAAGAGCAGCTGCTTT species: Brassica oleracea var. alboglabra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|122039905|gb|EH428770.1|EH428770 OL8791F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): ACTATAAAATTGCAGAGCACAAATACATAAACTCAGGAACTACAATTATACATTCCGAATCATATAACAGTAATAAAAAATGGAGCAGACATCAAAAGATGAGGTCTTCACTTCCAGTTATTGGCAACAATGTCAGCCAAATCAACAACTCTCTGAGAGTAACCCCATTCATTATCATACCAAGCAATCACTTTAACCATATCATCTCCCATAACCATGGTCAGAGAAGAATCAATGGTGGAGGACACATCAGAGCACCTGAAGTCAACAGAGACAAGAGGCTCATCGCAGACATCGAGTATACCTTTAAGCTCTTTCTCAGCTGCATCCCTGAAAGCAGCGTTAACCTCTTCAGCAAAAGTCTTCTTGGAGACCTGCACAACTAAGTCAACCACCGAGACGTTGGGAGTTGGCACACGCAACGCGATTCCATTGAGTTTCCCTTTGAGGTTAGGGAGCACTAGCGCCACGGCCTTAGCTGCTCCTGTAGATGTTGGAACGATGTTCAAAGCCGCTGCTCTTGCTCTCCTTAGATCACGGTGGCTAGCATCTAGCAGCCTTTGGTCACCAGTGTATGAGTGAGTAGTTGTCATTGTACCCTTTATGATCCCGAACTTCTGGTCAAGAACCTTGACGAATGGTGCGAGACAGTTAGTGGTACAAGAAGCATTGCTGATGATTGTGTCTTCATGGCTGTAAAGTTCAGCA | |||||||||
gi|122041362|gb|EH430227.1|EH430227 OL9525F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): TCTGATCAGATCAACTCTAACAGAAATGCTTCAGATTCCTCATGAGGTTTATTTTCCCTCATACTGTACATCAGAAACAGAGCATTTGACATAAAAGAAGAAGATGCATTTGCATCATCAAATTCAAAGGCAACAACAATATAGAAATGAACTTTTAAGTTCAACAATAACAAAAAGAAGAGATTGATTCATATGATGTTTAGATTCGGATCGTTTCGATGAGAATCTGCAAAATCTCTGACTAATCGCTTCAATGCTCGACCGTGTTTCCCTTGCATATGTCCACCTTCTAAACTGTTACTACTACTTGCAAAGTTGCAGCTTTTGTTCTCAAGGTAATCGATCCCTGCACCTCCCAGAGCTTCTGACCATTCCCTCACTATCTTTTCTGCTTCTCCTTGCTTTAGATACTCGCTCGGAAGTGCCCACACCGCTGAGTTTAGCCATCCTTGGAGAGACTTCCAACACAAGATTTCTTTCCATGAAGTTCTCTCACATAAACTGCAGATTGCAGCTAACTGTTGAAGTATTGTCGAACACTTATGCACCCTTGACATAGCTG | |||||||||
gi|122041665|gb|EH430530.1|EH430530 OL9681F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): AATCCATAACTTCGGGCTATAGGTTATACAGTCTTGAGTCTCTTGACCGATATTTTGAGAATCAGAATGTAAAAATAGGAGAAAACATGAGACAAGTTTTGGTTTCAAAAGCTACAAATCACTTCCAGTTGTTGGCAACAATGTCAGCCAAATCAACAACTCTCTGTGAGTAACCCCATTCATTATCATACCAAGCAATCACCTTAACCATATCATCTCCCATCACCATAGTGAGCGAAGAATCAATGGTGGACGACACATCTGAACATCTGAAATCAACTGACACAAGCGGCTCATCGCAGACTTCAAGGATACCTTTAAGCTCTTTCTCTGCGGAGTCTCTGAAAGCAGCGTTAACTTCCTCAGCGAAAGTCTTCTTGGTGACCTGCACAACGAGATCAACCACTGACACGTTAGGTGTTGGTACACGGAGAGCGATTCCGTTGAGTTTTCCTTTGAGGTTAGGGAGCACGAGAGCCACGGCTTTAGCTGCTCCTGTAGATGTGGGAACAATGTTTAATGCAGCTGCTCTTGCTCTCCTTAGATCACGGTGGCTAGCGTCTAGTAACCTCTGGTCACCGGTGTATGAGTGAGTTGTTGTCATTCGGACGCGTGGG | |||||||||
gi|122036310|gb|EH425175.1|EH425175 OL6902F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): AAACTCGGGAACTACAATTCTACATTCCGAATCACATAACTGTATAAAAAAAAATGGAGCAGACATCTTCACTTCCAGTTATTGGCAACAATGTCAGCCAAATCAACAACTCTCTGAGAGTAGCCCCATTCATTATCATACCAAGCAATCACTTTAACCATATCATCTCCCATAACCATTGTGAGGGAAGAATCAATGGTGGATGACACATCAGAGCACCTGAAGTCGACAGAGACAAGAGGCTCATCGCAGACATCGAGTATACCTTTAAGCTCGTTCGCAGCTGCATCCCTGAACGCAGCGTTGACTTCTTCAGCAAAAGTCTTCTTGGAGACTTGCACAACTAAGTCAACCACCGAGACGTTGGGAGTTGGCACACGCAATGCGATGCCGTTGAGCTTTCCTTTGAGGTTAGGGAGGACAAGAGCCACGGCTTTAGCTGCTCCTGTTGATGTTGGAACGATGTTTAAAGCAGCTGCTCTTGCTCTCCTTAGATCACGGTGGCTTGCATCCAACAGCCTCTGGTCACCAGTGTATGAGTGAGTGGTTGTCATTGTGCCCTTGATGATCCCGAATTTCTGGTCAAGAACCTTGACGAATGGAGCGAGACAGTTAGTAGTACAAGAGGCGTTGCTGATGATTGTATCTTCATGGCTGTAAAGTTCAGCATTGACACCACAAACGTAAGTTGGGATATCTCCC | |||||||||
gi|122031990|gb|EH420855.1|EH420855 OL4662R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GTCCGCGGGACGTTCCACGGCTGGGACATACTCTTCTACATCTTCCAGTTCATTCGTGTCGTGTTGCTTTTCACCGTGATCATCTTGATCGGAACCGGCTGGTCGTTCTTGAAACCTTTCTTGCAGGAGAAGGAGAAGAACGTGTTTATCATAGTGATCCCACTGCAAGTACTAGCCAACATCGCGTCGATCGTGATCGGCGAAACGGGGCCGTTTATTAAAGACTGGGTGACGTGGAACCAAGTGTTCTTGCTTGTTGATATCATCTGTTGCTGCGCGATTATCTTCCCTATCGTTTGGTCGATTCGGGCCTTGAGAGAGACGTCTAAAACCGATGGGAAAGCTGCGAGGAACTTGTCCAAGCTGACGCTGTTTAGGCAGTTCTACATTGTTGTCATTGGGTATTTGTACTTCACGAGGATCGTTGTGTTTGCGCTTAAGACGATCGCGGCGTATAAGTACCGGTGGGTGAGTTTTGCGGCGGAGGAGATTGTGAGTTTGGTGTTCTATGTGATTATGTTTTATATGTTTAGGCCTGAGGAGAAGAATGAGTACTTTGCTGTTGATGATGATGAAGAAGAAGCTGCTGCTGTTGCTCTTAGAGACGATGAGTTTGAGCTTTGAGTGTCTAAATGTTGCCACTATTTTTTG | |||||||||
gi|122037461|gb|EH426326.1|EH426326 OL7567F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GAACTACAATTATATCTTCCGAATCATATAACAGTAATAAAAAATGGAGCAGACATCAAAAGATGAGGTCTTCACTTCCAGTTATTGGCAACAATGTCAGCCAAATCAACAACTCTCTGAGAGTAACCCCATTCATTATCATACCAAGCAATCACTTTAACCATATCATCTCCCATAACCATGGTCAGAGAAGAATCAATGGAGGAGGACACATCAGAGCACCTGAAGTCAACAGAGACAAGAGGCTCATCGCAGACATCGAGTATACCTTTAAGCTCTTTCTCAGCTGCATCCCTGAAAGCAGCGTTAACCTCTTCAGCAAAAGTCTTCTTGGAGACCTGCACAACTAAGTCAACCACCGAGACGTTGGGAGTTGGCACACGCAACGCGATTCCATTGAGTTTCCCTTTGAGGTTAGGGAGCACTAGCGCCACGGCCTTAGCTGCTCCTGTAGATGTTGGAACGATGATCAAAGCCGCTGCTCTTGCTCTCCTTAGATCACGGT | |||||||||
gi|122040990|gb|EH429855.1|EH429855 OL9337R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GCACGCGTCCGACGGAATCGTAGGCTCTGCTCTTATCAATTATCATTTTTCAGTGTTAATCTGAGATTGGTGCTGGTCGCTACATATTGTGATGGCTTCTAACGATGGTAAGCCCTTCTGGATGAAACACGCAGAAGACGCCCAAATCAAGGACCAAGGAGAGAAAGATGCCGCCACCAAAGCAGCATTCGAAGCCACATTCCAAGGCGTCGATAGTGATAGCCTCATTATTGTTTTCTCGTGTGGTGTTTGATGCAAGAAGATTTGTCTCAGCCATAAGAGAAAAGTTGTTTTTGGAGGTGTAGAGCCTGTGAGTCAACCTCCATGGCGATCTGAGCAGACAGGAACATCAACTGCTTTTGCTCTCACTGGTCCTGAAGGTTCCAAGAGTGTTCAAAAGGGTGTGACAGAGAATGCTCTTGTTGTTGGTCCAACTCTACAGCCAAAACTCTTTCAGCTCATCCAGGTGCACTTGGGTTGGGTTACTGGAGCATAAATTGTGCTTTAGCTCTTGAGAAAGAAAGTATGAGCTGCAAAGAGACAGTAGGTTTAGATGCTTGAGAAAGCCAAGAGAAACAAGAAGCTCCTGAGGCGAGTTCATGGCGGCCTTGCCTTTATCACTGCAGAGACTGATTCTGCT | |||||||||