| mature miRNA: GAGAGCAAGAGCAGCTGCTTT species: Raphanus raphanistrum subsp. maritimus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|154096794|gb|EV529767.1|EV529767 RR1A588JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GAGATCCAAAAACAAGACTCTCACTCAATCCGTACCTAAATCCACCGCGAGATTCGTCTGCTCCACCGATAACAACAACAAGTCCATGAAGGCATTCTCCGCGGCGGTGGCTCTCTCTTCCATCCTCCTCTCATCCCCGATGCCAGCCGTCGCTGATATCTCGGGCCTAACCCCTTGCAAGGAGTCGAAACAGTTCGCCAAGAGGGAGAAGCAGCAGATCGAGAAGCTCGAGTTATCTCTCAAACTCTACGCTCCTGAGAGTGCTCCTGCTCTTGCTCTCAACGCTCAGATCGAGAAGACCAAACGCAGGTTCGACAACTACGGCAAGTACGGACTTCTGTGCGGTGCAGACGGGCTACCACACTTGATAGTGAACGGAGACCAGAGGCATTGGGGAGAGTTCATAACTCCAGGACTTTTGTTTCTTTACATTGCGGGATGGATCGGGTGGGTGGGGAGAAGCTACTTGATAGCGATTAGTGATGAGAAGAAACCAGCGATGAAAGAGATCATCATTGATGTACCGTTGGCTAGTCGTCTCGTCTTCCGTGGTTTCATTTGGCCTGTTGCTGCTTACAGAGCGTTTCTCAATGGCGATCTTATTGCCAAGGATGTTTAAGAAACAAACAAAAAAAATCTAAATATTTGATCCTTTGTTTGCTTCGTATGTGTTTAAACTCTGGTTATTAACTCTTCCCTGTCAAAGAGTATGTCTGCAATATGGGGAACTTGTTATTTGGATTAAATGTTGAAAATCCTACATTGGGAAATGAGAAGAAGTTATAGATAAACATGGAATTACTGCTT | |||||||||
gi|166100901|gb|FD532787.1|FD532787 RR1EO73TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GTGAGCCTTCAAAATTGACGCCAAAACTCTCTCTCTCTCTCTCTCTCTCGACGACGACGACGACCACCACTCTCTACCGGAAAACGATTGAACCGCGGGAGATCTCATCAGAATGAGTAACGCGCTTCTCGACATCGATCCTATCGACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCTTGCTCTCTCTATTTGGCTAACAAGACCGACAGTTATGTAGCCTTCAAGGTTAAAACGACGAATCCAAAGAAGTACTGCGTGAGGCCTAACACTGGCGTTGTTCTTCCCAGATCCTCTTCTGAAGTTCTTGTGACGATGCAAGCGCAGAAGGAAGCTCCTGCTGATATGCAGTGCAAAGACAAGTTCTTGCTTCAATGTGTTGTGGCTACTCCCGGTGTCACTCCCAAGGATGTTACTCCCGAGATGTTTAGCAAAGAGGCGGGGAATCGAGTTGAGGAGACGAAACTGAGAGTTGTCTATGTTGATCCACCACGACCACCTTCACCGGTTCATGAAGGATCAGAAGAGGGCTCTTCACCAAGAGCTTCTGTCTCTGACAATGGGAACAACAACAACGCTTCTGACTTTACTGCTGCTCCAAGATTTAGCGTGGACAGGCTTGAACCTCAGGATAACCCATCTGAGGCGAGAGCGCTCATCACAAGGCTCACCGAGGAAAAGAACTCTGCG | |||||||||
gi|161522210|gb|EY900000.1|EY900000 RR1E115TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GGTGGATATCTGACAAAACCCGATTCAGCTATGGCGGTCTGAAAAGGCAAAGGCTGAGCGACCCTATGATTCGAGATTCAGATGGACGATTCAAGGCGGTGAGCTGGCGTGATGCCTTGGCTGTTGTGGGTGATATCATCCATCAGGTGAAGTCAGATGAGATTGGTGGATATCTGATGCGGAATCCATGATGGTATTGAAAGACTTCGTTAACAGAATGGGTTCAGACAATGTCTGGTGTGAAGGAACAGCGGTTGGTGTTGATGCTGATCTTAGGTACAGCTATCTAATGAACACTAGCATCAGTGGCCTTGAGAACGCCGATCTTTTCCTACTCGTTGGTACCCAGCCTATAGTTGAAGCTGCAATGGTGAACGCTAGGATCTGCAAGACAGTCCGTGCATCCAATGCCAAGGTTGCATACATTGGTCCACCTGCAGATTTCAACTACGACTGCAAACACCTCGGGACTGGACCTGATACCCTCAAGGAAATCGCCGAGGGACGTCACCCGTTCTGCTCTGCTCTCAAGAACGCCAAGAACCCTGCAATCATTGTTGGCGCCGGTCTCTTCAACAGAACAGACAAAGATGCTATCCTCTCTACTGTTGAGTCCATTGCACAAGCCAACAATGTTGTCAGACCAGACTGGAACGGTCTTAACTATCTCCTCCTGTACGCTGCTCAAGCAGCTGCTCTTGATCTTGGTCTCATTCAACAGTCTGCTAAAGCCCTTGAGTCTGCGAATTTGTCTACTTGATGGGAGCAGACGATGTAGAT | |||||||||
gi|161522319|gb|EY900109.1|EY900109 RR1E233TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GGTGGAGCACTTGGATCTGTGAACCAGTTGTTCATATGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCTCTTGCAGCAAACCCTCTATGGTGGAGGACAATGTTTGGTGTTGCTGTCATCCCTTCCGTTCTGTTAGCCATAGGAATGGGTTTTTCTCCAGAGAGTCCAAGGTGGCTTGTTCAGCAAGGTAAAGTTTCTGGAGCTGAAAAGGCGATCAAAACTCTGTATGGTAAAGAAAAAGTGGTTGAACTAGTGCGTGACTTATCAACCTCTGGCAAAGGTTCTTCTGAGCCAGAGGCAGGATGGTTTGATCTATTCAGCAGCCGCTACTGGAAAGTTGTAAGCGTAGGTGCGGCTCTCTTCTTGTTTCAACAGTTAGCTGGGATAAACGCAGTGGTGTACTACTCTACATCAGTGTTCCGTAGCGCTGGAATCCAATCTGATGTTGCAGCCAGTGCTCTCGTTGGAGCATCAAACGTCTTTGGCACTGCTGTTGCTTCGTCCTTGATGGACAAAATGGGAAGGAAAAGTCTTCTACTCACAAGCTTCGGTGGAATGGCTTTGTCGATGCTTTTGCTCTCTTTATCCTTCACATGGAAAGCTCTTGCTGCATATTCTGGAACCCTTGCCGTTGTTGGAACTGTTTTGTATGTCCTGTCATTCTCACTTGGTGCTGGCCCAGTTCCGCTCTTCTCTTCCAGAGATATTCGCATCCCGGATCAGAGCAAAGCTGTTGCTCTTTCTCTCGGCATGCACTGGATATCAACTTTGTGATGGACTCTACTTCTAGCGTGTGACTA | |||||||||
gi|161516377|gb|EY896320.1|EY896320 RR1EA91JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): CTCTCTTCTTGTTTCAACAGTTAGCTGGGATAAACGCAGTGGTGTACTACTCTACATCAGTGTTCCGTAGCGCTGGAATCCAATCTGATGTTGCAGCCAGTGCTCTCGTTGGAGCATCAAACGTCTTTGGCACTGCTGTTGCTTCGTCCTTGATGGACAAAATGGGAAGGAAAAGTCTTCTACTCACAAGCTTCGGTGGAATGGCTTTGTCGATGCTTTTGCTCTCTTTATCCTTCACATGGAAGGCTCTTGCTGCATATTCTGGAACCCTTGCCGTTGTTGGAACTGTTTTGTATGTCCTGTCATTCTCACTTGGTGCTGGCCCATTTCCGGCTCTTCTCCTTCCAGAGATATTCGCATCCCGGATCAGAGCAAAAGCTGTTGCTCTTTCTCTCGGCATGCACTGGATATCAAACTTTGTGATTGGACTCTACTTCCTAAGCGTTGACTAAATTCGGAATCAGCAGTGTCTACTTAGGTTTCGCAGGAGTATGTGTCCTTGCCGTCATCTACATTGCAGGAAACGTGGTGGAGACTAAAGGACGGTCACTTGAGGAAATAGAGCTTGCTCTTAACTCCGGAGCTTGAAATTCAGAAAAAAAAACAAAAACCCACTCTGTTTCACCAATCGATCTTGTGAGTCTCTCTTTCGTTCATGCTCTTTGAATAACTTGTACAATGGACTAAGTAAGTAAATCAATAATGAGAAATCGATTCATCACCACCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|158640048|gb|EX749939.1|EX749939 RR1CS73TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GAGACGGTTTGGAAATATAGGCATACTTATGCAGAGAGCCATGTGTGTGCTGTTAGTTCTCTCTGTTCCTCTGTCCATTGTCTGGGCTAACACAGAGCATATCCTTGTTATTGCGCACCAAGACAAGTCCATCGCGAGGCTTGCTGGATCATACGCACGATACATGATCCCGAGCATCTTTGCATACGGACTTCTTCAATGCCTTAACAGGTTCTTGCAAGCACAGAACAATGTCTTCCCTGTATTTGTGAGCTCTGGAATTACAACTGCACTACACGTGCCTTTATGTTGGGTCTTAGTCTTCAAGTCTGGTCTAGGACACAAGGGAGCTGCTCTTGCTATTTCAATCTCGTATTGGACCAATGTTGTTCTCCTTTCCTGTTATGTCAAGTTCTCATCTTCTTGCTCGCACACCTGGACTGGTTTCTCCAAGGAGGCTCTGAGCGACATTTGGGCTTTTGTGAAACTTGGTTTTCCTTCTGCGGTTATGGTTTGCTTTGAGATGTGGTCGTTTGAGCTCCTGGTTATACTGTCAGGCCTGCTCCCAAATCCAGTTCTGGAAACATCAGTTCTTTCGATCTGCTTAAATACTTCACTAACCGTCTGGATGATCCTGGTTGGCCTTGGTGGCACCGCTAGCACGCGGGTCTCGAAC | |||||||||
gi|167475710|gb|FD961397.1|FD961397 RR1H492JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): TCGTACTATTGCGTTTACCAGCAGGAAGACGATGAAAGTCACGTCGGAATAAACTTGAATAAAGATCTCATGGCCATTGCTGGAGAAGCCTTGAAGTCTAACATCACCACCATAGATCCTTTGGTCCTACCGGCATCAGAACAGCTGCTCTTCCTCTCATCTCTTATCGGGCGTAAAATATTCAATGCAAAGTGGAAACCGTACATACCGGACTTCAAGATGGCCTTCGAACATTTCTGCATCCACGCTGGAGGACGAGCGGTGATCGACGAGCTGCAGAAGAGTTTACAGCTATCGGCAGAACACGTGGAAGCTTCGAGAATGACGTTGCATAGGTTTGGTAACACGTCTTCGTCTTCATTATGGTATGAGCTTAGCTACATAGAGGCTAAAGGGAAGATGAAAAGAGGCTACCGGGTTTGGCAGATTGCGTTTGGGAGTGGATTCAAGTGTAACTCTGCCGTGTGGAAATCTAACCGTACGATCAAAACACCAACGGAGGGACCATGGTCGGATTGTATCGACCGGTACCCTGTCTTTATCCCTGAGGTTGTCGAACTATGAGCATGCCTCTCTCTCTTTTCGGTGATACCTTTCAATAAGATTGGAATATGATAGAGAAAAGTGAAAAAGACGACACAAATACCATAAAAATGTTCATATATCTGCGTATACTTTTACATCTCTATTTTTTTATTGAAGTATTTATTTTTCTTATTTCCTTTTAGATTCTCGTGATGTATTATTTGTGATGTATCAAATGCTACTTCTCTCAAAAAAAAAAAAAAAAAAA | |||||||||
gi|158641333|gb|EX751224.1|EX751224 RR1BU30JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GGGAGTCATAACTATCCCAATATGCTGATTACTTGGTTATTAATGTTTCATCACCCAACACAGCAGGGTTGAGGATGCTTCAGGGAAGGAAACAGTTGAAGGATCTTGTGAAGAAGGTTCAAGCTGCTAGGGATGAGATGCAATGGGGTGATGATGGTCCTCCTCCTCTTCTTGTGAAGATTGCTCCTGATCTGTCCAGAGGAGAGCTTGAAGATATTGCAGCGGTTGCTCTTGCTCTCAAGTTGGATGGGCTGATCATATCAAATACAACAGTGTCGAGGCCAGAACCTGTAAGCAACAACCCTGTGGCAACAGAGACAGGTGGTTTGAGCGGGAAGCCGCTCTTTAATCTCTCCACCAACATGTTAAGAGAGATGTACACTTTGACGCGAGGAAAGATTCCACTGATAGGCTGCGGTGGTGTAAGCAGGTGAACGTGTCAACATGTTTTTTATATTGTGAGGAAAAACAGAACACAAAAGTTTGATTCAGATTGAATTGTGTGTGTGTGTTTTTTTTTGTAAGTGGTGAGGATGCTTACAAGAAGATAAGAGCTGGAGCTACACTTGTTCAGCTGTACACTGGGTTTGCCTATGGTGCCCTGCTCTCATCCCACAAATAAAGGAAGAACTGGTGAGTTGCTTAGAAAGGGATGGCTTCAAGTCGATTCAAGGAGCAATTGGTGCTGATCACAGATAGTGAAACACGAACAAGAACACCAATACAGAGGAGATAAACTCATTTGCTTACAACCAAAACATTTGATTCTGTTGTTTCTTTTCAGCATACGCAATAACATCATGGCTCTTGTCTCTTTTTCTCTTGTTTAATGGGAAATAACTAAGCAAGATTTGTTTTTCTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|161517552|gb|EY897439.1|EY897439 RR1D875TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GGACACTCGTCTCCAACTCCAGAGGAAAGCAATGTCGCTCACGAACCTCGTCCTCAACCCGAGATCCAAAAACAAGACTCTCACTCAATCCGTACCTAAATCCACCGCGAGATTCGTCTGCTCCACCGATAACAACAACAAGTCCATGAAGGCATTCTCCGCGGCGGTGGCTCTCTCTTCCATCCTCCTCTCATCCCCGATGCCAGCCGTCGCTGATATCTCGGGCCTAACCCCTTGCAAGGAGTCGAAACAGTTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAGCTCGAGTCATCTCTCAAACTCTACGCTCCTGAGAGTGCTCCTGCTCTTGCTCTCAACGCTCAGATCGAGAAGACCAAACGCAGGTTCGACAACTACGGCAAGTACGGACTTCTGTGCGGTGCAGACGGGCTACCACACTTGATAGTGAACGGAGACCAGAGGCATTGGGGAGAGTTCATAACTCCAGGACTTTTGTTTCTCTACATTGCGGGATGGATCGGGTGGGTGGGGAGAAGCTACTTGATAGCGATTAGTGATGAGAAGAAACCAGCGATGAAAGAGACCATCATTGATGTACCGTTGGCTAGTCGTCTCATCTTCCGTGGTTTCATTTGGCCTGTTGCTGCTTACAGAGCGTTTCTCAATGGCGATCTTATTGCCAAGGATGTTTAAGAACAAACAAAAAAATCTAAATATTTGATCCTTTGTTTGCTTCGTATGTGTTTAACTCTGGTATAACTCTTCCCTGTCAAGAGTATGTCTGCAT | |||||||||
gi|158639266|gb|EX749157.1|EX749157 RR1CJ93TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GCAGGTGTATTGGTGGCGACGGAGCTCTCTCTCTCTCGGTGGCGGCTCCGGTTCGTCGAAGCAGTGGTCCGGGACTGTCCTATGATGATATGGAGGAGAGGTTGGCGGGTGTTCCCGTTGCTTCGACAAACACGTTTACTCAACCAGATGAAGATGCGGAGGCGTTGTTCAACAAGATGAAGATTATGGAAGTCTCTGGGTTATGTTGTTCTGTAAGGAGGAAGATGCGGAGGCGTTGCTCAACCAGATGAAGATTATAGACCCTCGGATTAAGAAAGAAGGTTCCAAAGTTGTTGCTCTTGCTCTTTAGTAAGGTGTTCCAGTTAAAAGTTAATGGTGTGGCGTTTAGGTTGATTCTTGAGTCTACTCAAGTTAAAAATGCTCTCAAGGTATGTTGATTTTGGTGTTAATAATATTGTTACAGATAATGTGTCAAGAGATTATGCATTATGTATTTGGCCTTAGATATTGTGCTGAGGTTTCTGGTAAAACAAGCATTTTTTTTTCTTTAATCATCTCATCTATAGTTTGTTTTCTTCAAAACTGCGCTACTAGCATTCAGTTTTGGTACATTTTTACACATTGGTCTTATGGATATGAACTTCTTTGTAGTAGTTGCGCGTAGTTTCTAAATGTATATCTCTTTGTAAACAAGCATTTTTTTTCTTTAATTATCTCATCTATAGTTTGTGTAATCATCAGTTTTGATCCAAAACCTTTAATATATTGAGTGTTTTTATTTGAAAATATATTAAGTGTAAAGCTTCTGTTTTATT | |||||||||
gi|161513671|gb|EY893838.1|EY893838 RR1DA05JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence GAGAGCAAGAGCAGCTGCTTT EST sequence (targeted fragment marked with yellow): GTCTAACATCACCACCATAGGTCCTTTGGTCCTACCGGCATCAGAACAGCTACTCTTCCTCTCATCTCTTATCGGGCGTAAAATATTCAATGCAAAGTGGAAACCGTACATACCGGACTTCAAGATGGCCTTCGAACATTTCTGCATCCACGCTGGAGGACGAGCGGTGATCGACGAGCTGCAGAAGAGTCTACAGCTATCGGCAGAACACGTGGAAGCTTCGAGAATGACGTTGCATAGGTTTGGTAACACGTCTTCGTCTTCATTATGGTATGAGCTTAGCTACATAGAGGCTAAAGGGAAGATGAAAAGAGGCGACCGAGTTTGGCAGATTGCATTTGGGAGTGGATTCAAGTGTAACTCTGCCGTGTGGAAATCTAACCGTACGATCAAAACACCAACGGAGGGACCATGGTCGGATTGTATCGACCGATACCCTGTCTTTATCCCTGAAGTTGTCAAACTATGAGCATGCCTCTCTCTCTCTTTTTTCGGTGATACGTTTCAATAAGATTGGAATATGATAGAGAAAAGTGAAAAAGACGATACAAATGCCATAAAAATGTTCATATCTGCGTATACTTTTTACATCTCTATTTTTTCATTTGAAGTCTTTATTTTTCTTATTTCCCTTTAGATTCTCGTGATGTATTATTTGTGATGTATCAAATGCTACTTTTCTCTTCATTTTTAGAAATTCGAAATAATACTTCTCTTTATCTAAAAAAAAAAAAAAAAAAAA | |||||||||