| mature miRNA: GAGCCAAGAATGACTTGCCGA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188251531|gb|EY690183.1|EY690183 CS00-C2-003-058-E03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ GAGCCAAGAATGACTTGCCGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGCATCACATACCATTCACACTTATGTGATAGAGGGGAAACTGGAGACTGTTCAGGCAAGCAGTGGGGAAGCATATCTTCCAACCAGGCATCGCAGAGGCCTCTTGCTATTCAGTGAGCCCTTTTGCAGGTAAGGTGGGTGCCGTCTCGTGCCAATATGGAGGATGAAGACCCACTGATATACTGAAGGGTAGTTTCTTGGTTGTCTTGTGGCCGGCAAATCATTCTTGGCTTCGTTCTTTTGGATGGATTGTGGGTGAATGAGGGAGGAGATGAATCATCCCCTCGTGGCTTCTTGCAAGTGATTTTTACCTGCTTATCGTCATTCCTCCCCTCTTTTTTTATGCACAGATGAAGTTTGATCGACTCCATTACAAATGCTAGCAAGGATAAAATATAAAAGCTGCCGGCAGCCTGAATCTTTAAGCAATTACAAAAGAAAAAACCCCCCCACAAACACCCCAACACCCCGCACAGTCCACACACCGTCAACGCCATCCAAAAATCTGATCTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAGCGACGGGCAGAAGAGAGGCGACCAGATGTCGCGCGTCCGCGCAGCTAGAAGCAGGGCAGCCCCGAGAGAACAGGGGGTCGCAACCCGCCCGCAACCTCAGACGCCGGCCACCGAATGGCAACAAGACCCAGGAGACGGGGGGGCAAACCACAACAGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGCAGCACGCAGCACCGATAACATGAAGAGAAAAACAAAACGGACGACGAAAACGAGGCACAGAGAACCGCCCCAGCCCCAACCACCACACGCGCGGCCAAACGCCAAAACAGCAACTACG | |||||||||
gi|71598763|gb|DR909514.1|DR909514 USDA-FP_17642 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_E01 5', mRNA sequence GAGCCAAGAATGACTTGCCGA EST sequence (targeted fragment marked with yellow): AGAATCTGAAGCTCACCGCGAGAACTACAAAGATGGTGGTTCCACCACGTCTTGTTCTGACATCACAAGTGCCTCCAACAGTGAAGACATATTCCAGCAGCCGGAGTTTGGGTTCTCTGGTTACTCTTCTATTGGCAGTCGAAGCATGCAAGGTTGTTCAGCTACTATGAATGGTGATGGCAACATTCACCGTTTCCTGTCCTCTGTCGATGGATGAGCCCAGCATCGCTGGCTCGTCTCAGCTAGTCCGAATTCTGACATTCAGATGAAGAAGAACAGGCTGCGGCTTTTCCCTTGGGAAGTCATCCTTGGCTCTTTAACTTTTCAAGTATTTTGTTCTCGTAGTTTCAACATCTTGTCAAAAACTGCAATGGAGTTAAAGTTTTTGTGATTTTAAGGTTGTTACTTGCATTATCCGAAACTCAGATACAAGGATATTTCATTAAGATGGTCTACCGAGAAACCCCAATTTGTTTCAAAAAAAAAAAAAAAA | |||||||||
gi|188278624|gb|EY698346.1|EY698346 CS00-C3-700-070-G01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD GAGCCAAGAATGACTTGCCGA EST sequence (targeted fragment marked with yellow): TNNTNTTTCTTTCGTTGTGGAGGGGCACTNGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAAAAATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAAAGATAGTGAGCGTACTCAATCAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCCATTTGGAAATTCCTTGGGTCATTCTTGGCTCTTCTGAAAGGAGACTCATTTTGAATGAATGTAATGAGTTTGTTGGGGATAATGATGCATATGTACTTCTTCNACGTTTGAACGTGATTGCATTGAGTGAAGAAGAGACTCGAACAGCGTGAAGCAAGAACTACTATGGGATGTGTTGCGTGACGAATCATAACAAATGCAATATAGAAGTCCTAACTGGGAAAAGAATTGAGTTTGCCAATAAAGCAGTGTGGGATTATAATGACTTTAAAGTTGAGCCATTCAGGTAAAGGATAAAAAAGTATATCTCTCAATAGAGATCATAGCTCGATAGTTTCTTGTGTCTTCTCATCGAAGAAAGAGAACAGGATGTCTACAGGAACATAGCGAAAATGAGCATCGATGAAATAGAAAGGATTAACAACTACAAAGGTTAGATGTTCTTTTGGATTGGGGGGGTTTTGCTGAAATCTATAATATTCCGGTCGGATTCGCTTACCCTTGTGCGATTATTTACAACTTGTCTTTCCCCACCGCCGCTGCAAATCGCTAGCGGCAAATACACAACGCGTTAGTATACTCNATTCGTCTCCTTCTTATTCTCAGATATAATATGGTTGT | |||||||||
gi|188364896|gb|EY694291.1|EY694291 CS00-C3-700-023-H10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD GAGCCAAGAATGACTTGCCGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGAACCTGTTTATGCGAATGCCAAACAGTACATGGGGATTTTGAGGCGAAGACAGGCACGTGCTAAAGCAGAGCTTGAAAAGAAACTAATAAAAGTTAGAAAGCCGTATCTTCACGAGTCTCGGCACCAGCATGCAATGAGAAGGGCAAGGGGTAGTGGAGGACGGTTTGCAAAGAAAACTGATGATGCTTCCAAGGGTAATAGTGAAAAGAAGGGTGGAGGTTCGGGAATCAGGCCATCTCTGTCTGGCAGTTCATCTGGATCTGAACCCGTGCCATCCGACTCAGCTGAAACCTGGAATTCTTCAGCTAGTCAGCAAGATGTAGGTGGGTCTCAAGCACACAACATGCATGAAGCTCGCAATCATGCAAATGCCAATGGTGGTTACCAGAATCATGGCCTTCAAGCATCAACATACCATTCACACTTAGGTGATAGAGGGGAAACTGGAGACTGTTCAGGCAAGCAGTGGGGAAGCATATCTTCCAACCAGGCATCGCAGAGGCCTCTTGCTATTCAGTGAGCCCTTTTGCAGGTAAGGTGGGTGCCGTCTCGTGCCAATATGGAGGATGAAGACCCACTGATATACTGAAGGGTAGTTTCTTGGTTGTCTTGTGGCCGGCAAATCATTCTTGGCTTCGTTCTTTTGCATGGATTGTGGGTGAATGAGGGAGGAGATGAATAAGCCCCTCGTGGCTTCTTGGCAGTCATTTTTAGCTGCTTATCGTCATTCCTCCCCCTCTTTTTATGTACAGATAATGTTTGATAAACTCCATTAGAATAGTCGCATGGATTAACTTGGAACGTAACGGCAGTCTGAATCTTAAACATTTTCTAGTGACCAAACAAAATGAATGCTACCCGGCCTTGTGGGTACTTTGAGGGGCTGATACATTTGACTTCAAGGTTTATGTTCAATCAAAAAAAAAA | |||||||||
gi|188337651|gb|EY659847.1|EY659847 CS00-C1-101-015-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) GAGCCAAGAATGACTTGCCGA EST sequence (targeted fragment marked with yellow): TCAACAAAGAGGCGTCCGCCGCCATGCTTTTCCAAAGAACAGGGCAAGAGGATCTGGCGGGCGTTTTCTCAACACAAAGAAGGTTTCAGCCTCCAAGCGTAATCTAACAAACAATGAACTGGATATGTCAGAATCTGAAGCTCATCGCGAGAACTACAAAGATGGTGGTTCCACCACGTCTTGTTCTGACATCACAAGTGCCTCCAACAGTGAAGACATATTCCAGCAGCCGGAGTTTGGGTTCTCTGGCTACTCTTCTATTGGCAGTCGAAGCATGCAAGGTTGTTCAGCTACTATGAATGGTGATGGCAACATTCATCGTTTCCTGTCCTCTGTCGATGGATGAGCCCAGCATCGCTGGCTCGTCTCAGCTAGTCTGAATTCTGACATTCAGATGAAAGAACAGGCTGCTGCTTTTCCCTTGGGAAGTCATCCTTGGCTCTTTAGTTTAACTTTTCAAGTATTTTGTTCTCGTAGTTTCAACATCTTGTCAAAAACTGCAATGGAGTTAAAAGTTTTTGTGATTTTAAGGTTGTTACTTGCATTATCCGAAACTCAGATACAAGGATATTTCATTAAGATGGTCTACCGNNGA | |||||||||
gi|57935462|gb|CX675683.1|CX675683 UCRCS08_64A05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis GAGCCAAGAATGACTTGCCGA EST sequence (targeted fragment marked with yellow): ATCAAGTGCTACCTTATATACAGAATAGAAAGAATAACAAAGGTTGGAAATTGGTCTAGGGTTTCTTATATGAAGGGATAAATAGAGGATCTAGAGCCAAGAATGACTTGCCGACGGCATTGACCATAATATCATACGGCAGGCCATTCTTGTCTCAACTCCGCTCTCTATCTTCTCATCTGAGACTCTCGGACACTGACAACCAACCTCAGCAATGCAGCACCAGATGATTCTTTCTATTCTCAGGTGATCTATGATACTATGCTCATCTAATGAGCTCTGCGTCACATTTTTATTTTTCCCCCATTTTTCTGACTTCTCCTCCTTGAGCCATTTTTCCAGATCCATGAACAGTACAAAATCTCTATTACAACCAACAGAGTTAAGCAATGCTGTTCTTAATCATAAGCTTATTTTAGGGTGGCATATATTTTGCAATAATCTAGTTAGAAATAATTAAAAGTTTTTTCTTGGAGCTTTGGCGTTTCTCCTGGCATTTGTACAACCTTTTATGCAAACAGTTGTAGAATTGGGGATGACACAATCTTTGGTTGGAGTGTGATTTTATGCTGTATTTATTATGCACACAATAGCAGGCTCGTCGATCCTCTGTTCATGCAAGAACTAGAGCGAAGGAATAGATAGCTTGATTATCGAACAAATTAAAATAATTAATCGTGCATCAATTTTGACAAGGAGTGAGGAACCTCTCCTCATCTGCATTATCATGAAATTTTAATAATTTTGTACATATC | |||||||||