| mature miRNA: GAGGGAATATTTCCGTCGGTA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24066412|gb|BU874888.1|BU874888 Q073A09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GAGGGAATATTTCCGTCGGTA EST sequence (targeted fragment marked with yellow): GGAACTCGCCTTCTTCTCTCTACACGCATAGTTTACGTTTCTCTACGGCTGAATAGCTAGGGGGAAAAAGAAAGAAAGATGGGAGGTGGATTTAGGGTGCTTCATCTTGTCAGACCATTTCTGTCATTTCTTCCTGAAGTTCAGAGTGCTGACAGAAAAATTCCCTTTCGTGAGAAGGTCATATACACTGTGATTGCTCTTTTTATTTTCTTGGTGTGCAGTCAACTCCCATTGTATGGCATTCATTCGACAACCGGTGCTGATCCTTTCTACTGGATGCGTGTTATTCTTGCATCCAACCGTGGTACTGTCATGGAGCTTGGTATCACTCCAATTGTGACATCTGGGCTAGTAATGCAACTGCTTGCTGGCTCAAAGATCATTGAAGTGGACAACAACGTCCGTGAAGATCGTGCACTATTAAACGGTGCGCAGAAGTTGCTAGGTATCCTGATAGCCGTTGGTGAAGCGGTGGCATA | |||||||||
gi|73877635|gb|DT480373.1|DT480373 WS02528.BR_L11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_L11 5', mRNA sequence GAGGGAATATTTCCGTCGGTA EST sequence (targeted fragment marked with yellow): GCAAAACCACCGAATCGACGAAACCACCTACTAGAGCTAAGCCAGTCAAGGCATCCAAACCCGAACCCGAATACTTCGAAGACAAGCGCAACTTGGAAGACTTATGGAAGGAAATATTCCCTGTCGGTACAGAGTGGGATCAACTGGACAAGCTTTACGGATTCAACTGGAATTTCTCTAATCTAGAGAATGCATTTGAAGAAGGAGGTGTTCTACATGGGAGGAAAGTTTACCTTTTTGGGTGTACAGAGCCTCAACTGGTCCCTTTCAAGGATGATAGCCTATTAATCTACATACCTGCAGTCGTGGCGGTTGCATCTCCTTTCCCTCCTTCTGATAAGATTGGAATTAAGTCGGTTCAGAGGGAGGTTGAAGAAATAATTCCCATGAAACAAATGAAAATGGATTGGGTTCCTTATATACCTCTGGAAAATAGAGAAAGTCAAGTTGACAGACTGAGACATCAAATTTTTATTCTGAGCTGCACTCAGAGAAGGACCGCTTTGAAACATTTGAAGATAGATCGGATCAAGAAATATGAGTACTGCTTACCTTATTTCTACAACCCCTTTAAGGAAGATGAGCTTGAGCAGAGCACCGAGGTTCAGATAATTTTCCCATCAGAACTAAAGCCGATTTTCTGTGAATTTGATTGGGAACTTGATGAACTTGAGGAGTTCACTGATAAACTGATCCAGGAGGATGAATTATCTGAAGATCAAAAGGATGCCTTTAAGGAATTTGTTAAAGAGAAATTTCGAGAAGCAAAGAAAGCTAACAGAGAGGCAAGGGAAGCCAGGAGAAAGGCCCTGGAGGAAATGAGTGAGGAAAGTAGACGAGCATTTGAGAAAGTGAGGTTTTACAAGTTCTATCCCGTGCAAACACCTGATACACCTGACATA | |||||||||
gi|52497595|gb|CV244620.1|CV244620 WS0255.B21_C14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_C14 3', mRNA sequence GAGGGAATATTTCCGTCGGTA EST sequence (targeted fragment marked with yellow): GCTGTTGTCGTCGTCTTTTGTACTCAGTTCCGGATTCTTGGCTTGATTTGGCAAAAGTTTGCTCTTTGCGGCTCTTATTATTATTTTTTTATCTAATTTTCTTTCCCTAACTTTATCACAGAGGGGGATTCTATACATTTCTATTTACAGAAATATTCTCTCACTGGTGTACCTGATTTTTTCTTCATTTTCTTTTTATTATAATTTGTTTACACTTTTATTGAAGCAAGATAGTTTTTTCATGATCTGAAGCAGTCAGTAGACACTTGCTTTCTTCAATTAATTTTCCTCTCTGTGTTATAATTACACCTTTATCTCTCTCTCTTTCTTGTGGGTTGATTTTCTGTGACCAAAGATCCCTCCTTGATTTCTTGCAATCAAGATCCACTATTTTACATTGACGTAACTCCAGATCTTCAATTGGTATTCTTCCTTATGAAAGGACTTCTTTGGGGTGAGTTGAAGTTTTTTTACTTGGTGAAGATGACTCGGAAGAAAATCCAGATCAAGAAGATAGACAACACAGCTGCAAGGCAAGTTACTTTCTCAAAGAGGAGAAGAGGGCTTTTCAAGAAAGCTTATGAGCTCTCAACTCTATGTGATGCTGAGATTGCTCTCATGGTGTTTTCTGCAACTGGCAAGCTTTTTGAGTACTCAAACTCAAGCATGGGGCAAGTGATTGAAAGGCGCAATCTGCATCCAAAGAACATCAACACGCTCGATCAACCATCTCTTGAGAAACAGCTTGATGGTGGTGTGCATGCCATGCTGATCAAAGAAATAGCAAAAAAAAAAAAAAAAAA | |||||||||