| mature miRNA: GAGGGAGAGGGTTTAAGGCTC species: Raphanus raphanistrum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|167490528|gb|FD973546.1|FD973546 RR2H284TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence GAGGGAGAGGGTTTAAGGCTC EST sequence (targeted fragment marked with yellow): GGAGAGTTAAGCCCTTTCCCTCTACTCACCGTCGCCTCCGATCACATTTATCACCTGTCGCAGTGTACTGGAATCGAAAATTTCCGGTTTGTGCAAGAAATGAATTTCTTAAACTCAGCAGCATCCTTATGCAGAAGAGTTAGTTTGAGGGAGCTCATCACCGAGGTTCCTGCTTACGGTGGCAGTGGCATCTCCGATTGTTCCTCGAGTGGGTTGAGTTTAGTGTTGAAGCGTTGGGCTACTAAGAAAACCGCCGGTTCCACCAAGAACGGACGTGACTCTAAGCCCAAGAATCTCGGCGTCAAGAAATTCGGAGGAGAGAATGTGATACCGGGAAACATAATAGTCCGTCAACGTGGAACTCGTTTTCATCCGGGAGACTATGTCGGGATTGGGAAGGACCATACTCTGTTTGCATTGAAGGAAGGACGAGTCAGGTTCGAGAAAAACAAGATCACTGGACGCAAATGGATTCATGTTGATCCTAAGGGAGGTCATGTTCTTCACCCTATCTACACTAAAGCTGCAATGGCCAAGTCCACTACGGTGGAGACAGCTTCGTCGTCCTGAAAAGAGATTGGTTCAACAATCTAAAGGTGTCTTTTGTCAGATAACATCTTCTGTTGACTAGAAGATTGTGATACTTGTACCTTAGAACAGCAAACAACCAATTCAATAACATCTGCTGTTTTGTCTCCTCTTTAGTAGTACAACAATGTATCCAGTACTCTCCTCGCTCTTTTTGCTAGTGAAATTATCACTAAGTTT | |||||||||
gi|161551774|gb|EY923369.1|EY923369 RR4DQ15TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence GAGGGAGAGGGTTTAAGGCTC EST sequence (targeted fragment marked with yellow): GGGAAATTTCATAAGAGCCACAACATTTCACAAAAAAATAATGGCAACGACTGCATCTCCAATGGCGAGCCAGCTAAGAAGTAGCTTCTCTTCCGCTACTAATGCGAGGCGTATCGCTGTTCCTAAGGGCATCTCCGGCGCTCCCTTCCACGTTTCACCGACAAAGAGAACGTTTTCTTTCACAGTCCGAGCTGTCCAGTCAGACAAGCCAACATTCCAAGTGATCCAACCAATCAACGGCGATCCATTCATCGGAAGCTTAGAAACTCCAGTAACGTCAAGCCCACTGATCGCGTGGTATCTCTCCAACCTCCCGGCTTACCGCACAGCCGTCAACCCTCTCCTTCGAGGTGTCGAAGTGGGTTTGGCTCATGGTTTCCTTTTAGTGGGCCCATTTGTCAAAGCAGGCCCATTAAGGAACACTGCCTATGCTGGCTCCGCCGGATCTTTAGCCGCTGCTGGGCTTGTAGTCATCCTCAGCATGTGCCTCACTATCTATGGAATCTCTTCGTTCGAGGAAGGAGAGCCGTCGATTGCACCAAGTTTGACTTTGACGGGGCGGAAGAAGCAACCGGACCAGCTTCAGACAGCAGAGGGATGGGCTAAGTTCACTGGAGGGTTCTTCTTCGGAGGGATCTCTGGTGTGACTTGGGCTTATTTCCTTCTCTACGTTCTTGACCTTCCTTACTTCGTCAAATGATGTACTTAAAAATATGATCTTTCACCAATCTTCTCGACTTCAAATACTTTCTTG | |||||||||
gi|158659791|gb|EX769682.1|EX769682 RR3CX69JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence GAGGGAGAGGGTTTAAGGCTC EST sequence (targeted fragment marked with yellow): AAATATGTGGCACAATAGCTGCAGACGAGAAGCGTCACGAGACCGCTTACACCAAGATAGTTGAGAAGCTCTTTGAGATTGATCCTGACGGTACTGTCATGGCGTTTGCAGACATGATGAGAAAGAAAATCTCAATGCCTGCTCACTTGATGTACGATGGGCGTGATGACAGCCTCTTTGACAACTTTTTTTCAGTGGCTCAGAGGCTCGGTGTTTACACTGCTAAAGACTATGCGGACATTCTTGAGTTTTTGGTTGGGAGGTGGAAGATTGAGAACTTAAAGGGGCTTTCGGGTGAAGGAAACAAAGCACAAGACTACTTATGTGGGTTGACTCCGAGAATCAGGAGGTTGGATGAGAGAGCTCAAGCGAGAGCCAAGAAAGGACCCAAGATTCCTTTCAGCTGGATACATGACAGAGAAGTGCAGCTTTAAAACGAGACACAGACATTAAACCCTCTTCCTCTCCGCTCCTCATTTGATCTGTCTGCTCTTGAAATTGGTGTAGATTACTATGGTTTGTGATAATGTCCGTGGGTCTAGTTACAAAGCTGAGAAGCAGTGATTTAGTAGCTTTGGTTTTTTTTTTCAAGTCTCTATATTTTTTGTGTTTGGTCCTTTGAGTAAACTTCTTGTAGTTGAACAGTTGCACTGTTTGGTCTGTACTCAGTTTCACTCTGGAGTTTTGTTTCAGTTCATTGCAGAGAGAACTTCTTTATCCATTAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|166108775|gb|FD543406.1|FD543406 RR2FK86TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence GAGGGAGAGGGTTTAAGGCTC EST sequence (targeted fragment marked with yellow): GGGGAGTTAAGCCCTTTCCCTCTACTCGCCGTCGCCTCCGATCACATTTAACCTGTCTCAGTGTACTGGAATCGAGAATTTCCGATTTGTGCGAGAAATGAATTTCTTAAACTCAGCAGCATCCTTATGCAGAAGAGTTAGTTTGAGGGAACTCATCACCGAGGTTCCTGCTTACGGTGGCAGTGGCATCTCTGATTGTTCCTCAAGTGGGTTAAGTTTGGTGCTAAAGCGTTGGGCTACTAAGAAAACCGCCGGTTCCACCAAGAACGGACGTGACTCTAAGCCCAAGAATCTCGGCGTCAAGAAGTTCGGAGGAGAGAATGTGATTCCGGGAAACATAATAGTCCGTCAACGTGGAACTCGGTTTCATCCGGGAGACTATGTCGGGATCGGGAAGGACCATACTCTGTTTGCATTGAAAGAATGACGAGTCAGGTTCGAGAAAAACAAGATCACTGGACGCAAATGGATTCATGTTGATCCTAAGGGAGGTCATGTTCTTCACCCTATCTACACTAAAGCTGCAATGGCCAAGTCGACTAAGGTGGAGACAGCTTCTTCGTCCTGAAAAGAGATTTGATTCAACAATCTAAAGGTGTTTCCTTCTTTTGTTAGATAATACTTTCTCTTGACTAGAAGATTGTGGTGGTATCTTAGAACAGAAAACACTCAATTCAATAATGCATGCTGTTTTTTGTCTG | |||||||||
gi|161532980|gb|EY905250.1|EY905250 RR2D622TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence GAGGGAGAGGGTTTA-AGGCTC EST sequence (targeted fragment marked with yellow): GGTCGGAGATGGAAGCTTTAACCGAAGACCCCAAACTCAATCTACAACGAATCAGCGCCGAAAAGTCCTCGAATCCGGCAAAAACGAGTAGATCTGACCCACCAGGAACCAAAACTAAGCTCCCAATGCATATCTCAAGCTCTACCGGAGAAGACAGCACCACCATAGTCCAGAGCCAAAAACACAGTCGACATAACGACACGAAGGAGAAGGAAAAAACAGAGAAGAGGGGAAGAGAAGAGCATACGGCGAAGACGCTGAAACCCCTCTCCTCCCACACAGAATCGATGACGGCTACTAAGGTTTGCAGATGAGGAAGAGAGACACTAGAGAGAGTTTCTAAACCCTCTCTCTCTCCCGTGTTTTTTTTTTGTTTTTGTAGCATATATTCACTTTCTTATGTCTTATTTTAAAAAAGACAACCATATCTCCAATGTAAGTCATCGGAGGATGAGATTTTCTTAATTTTAAGTTTCAAAAGATTTCACGTTATATTTACTAGCCTCGATCACATTTAAAACCTGTCATTTACATGACACACAATACCACTATTAAACATGCAGTGACTAGCTATACGTCTGTTGAGTTTAACCATTTTTCAATTGCACTCCCAGTTAAAAGAAATTCAACCATTATACATCTGCACTTAAAAGATTTATGTAAATTCTACAGTATCCTTCTTCTTATACATCTCTTCACTCTTTTTCCACACTCCACATCCATCACATTTTCATTTTCAACATCTCAAGGATTTCTAACATCCCCGCAATAACTAATGCCTACAAACCTGTACAGA | |||||||||
gi|167489670|gb|FD973825.1|FD973825 RR2H614TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence GAGGGAGAGGGTTTAAGGCTC EST sequence (targeted fragment marked with yellow): GGGAGTTAAGCCCTTTCCCTCTACTCGCCGTCGCCTCCGATCACATTTAACCTGTCTCAGTGTACTGGAATCGAGAATTTCCGATTTGTGCGAGAAATGAATTTCTTAAACTCAGCAGCATCCTTATGCAGAAGAGTTAGTTTGAGGGAACTCATCACCGAGGTTCCTGCTTACGGTGGCAGTGGCATCTCTGATTGTTCCTCAAGTGGGTTAAGTTTGGTGCTAAAGCGTTGGGCTACTAAGAAAACCGCCGGTTCCACCAAGAACGGACGTGACTCTAAGCCCAAGAATCTCGGCGTCAAGAAGTTCGGAGGAGAGAATGTGATTCCGGGAAACATAATAGTCCGTCAACGTGGAACTCGGTTTCATCCGGGAGACTATGTCGGGATCGGGAAGGACCATACTCTGTTTGCATTGAAAGAAGGACGAGTCAGGTTCGAGAAAAACAAGATCACTGGACGCAAATGGATTCATGTTGATCCTAAGGGAGGTCATGTTCTTCACCCTATCTACACTAAAGCTGCAATGGCCAAGTCGACTAAGGTGGAGACAGCTTCTTCGTCCTGAAAAGAGATTTGATTCAACAATCTAAAGGTGTTTCTTTCTTTTGTTAGATAATACTTTCTCTTGACTAGAAGATTGTGGTGGTATCTTAGAACAGAAACACTCAATTCATAATGCATGCTGTTTTTTGTTGAATACTGA | |||||||||