| mature miRNA: GAGGGCTCTAAGGCGCACTT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60711999|gb|DN501809.1|DN501809 V030B09.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V030B09 5', mRNA GAGGGCTCTAAGGCGCACTT EST sequence (targeted fragment marked with yellow): GAAGCAAAAGTAGTCTCTTTTCAACAAGATCAGGAAGTCCCCTTAGAGCCCTCAAAGAGAAACATAATACAGGTAATGGAGCAAGAGAATATCAAGAGGAAGAGAGGAAGAGAGGAAGAAGAAGAGGAGGTGAAAGAGGAGTCCTCAAATAATAAATCTACAAAGATGCAAGCTGATCATCTTAGTCACCCACGTAGTGTAAGGAACGACATCAAAATCGAAAGGAGATCATGCAACCATGAAGAGGACAGCAACACCAGGAATGAAATAACCGGAGACAACAATTTCGCACTTGGGGTATTTGATTTCCCCTGGCTGAAAGAAGAAGGCAGCAGCATGATCTCAAAGGCAGACGAGGAGGAGTGGTGTTTACAGGACACAATATTCTCCTCATCTCTCTATTACAGTACAACATCTGCCGCTGAATTTTCTGGACAACACTTGTGGGAAACCACTCCATAAGCCACGTGCATTGGATCATGCATATACGTTCCGGTGGACAAGTTTGAGGAGATTAATGCTTGGTCATTGGAAATGGAGGCTACTGTTGATTGAACCTCGACCTCCCTGCTCCAAAACAAAAATGGTGCCTACTCCTAGCTTAGCTAATCACTGCAAAGTTTGCATTTGCATTGCATGCACACAACCCACTAGGAAATCTTGATGGGTTTATCTTCATTCCCTAGCATTGCAAACCCA | |||||||||
gi|24067863|gb|BU876339.1|BU876339 V019D09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GAGGGCTCTAAGGCGCACTT EST sequence (targeted fragment marked with yellow): ATCATTCTTCTTTAGCTAACAGCAACACCAAGCAAAAGTAGTCTCTTTTCAAACAAGATCAGGAAGTCCCCTTAGAGCCCTCAAAGAGAAACATAATACAGGTAATGGAGCAAGAGAATATCAAGAGGAAGAGAGGAAGAGAGGAAGAAGAAGAGGAGGTGAAAGAGGAGTCCTCAAATAATAAATCTACAAAGATGCAAGCTGATCATCTTAGTCACCCACGTAGTGTAAGGAACGACATCAAAATCGAAAGGAGATCATGCAACCATGAAGAGGACAGCAACACCAGGAATGAAATAACCGGAGACAACAATTTCGCACTTGGGGTATTTGATTTCCCCTGGCTGAAAGAAGAAGGCAGCAGCATGATCTCAAAGGCAGACGAGGAGGAGTGGTGTTTAGAGGACACAATATTCTCCTCATCTCTCTATTACAGTACAACATCTGCCGCTGAATTTTCTGGACAACACTTGTGGGAAACCACTCCAGAAGCCACGTGCATTGGATCATGCATAGACGTTCCGGTGGACAAGTTTGAGGAGATTAATGCTTGGTCATTGGAAATGGAGGCTACTGTTGATTGAACCTCGACCTCCCTGCTCCAAAACAAAAATGGTGCCTAGTCCTA | |||||||||
gi|24069105|gb|BU877581.1|BU877581 V036E02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GAGGGCTCTAAGGCGCACTT EST sequence (targeted fragment marked with yellow): GGAAGTCCCCTTAGAGCCCTCAAAGAGAAACATAATACAGGTAATGGAGCAAGAGAATATCAAGAGGAAGAGAGGAAGAGAGGAAGAAGAAGAGGAGGTGAAAGAGGAGTCCTCAAATAATAAATCTACAAAGATGCAAGCTGATCATCTTAGTCACCCACGTAGTGTAAGGAACGACATCAAAATCGAAAGGAGATCATGCAACCATGAAGAGGACAGCAACACCAGGAATGAAATAACCGGAGACAACAATTTCGCACTTGGGGTATTTGATTTCCCCTGGCTGAAAGAAGAAGGCAGCAGCATGATCTCAAAGGCAGACGAGGAGGAGTGGTGTTTAGAGGACACAATATTCTCCTCATCTCTCTATTACAGTACAACATCTGCCGCTGAATTTTCTGGACAACACTTGTGGGAAACCACTCCAGAAGCCACCTGCATTGGATCA | |||||||||
gi|24068512|gb|BU876988.1|BU876988 V028A08 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GAGGGCTCTAAGGCGCACTT EST sequence (targeted fragment marked with yellow): CTAACAGCAACACCAAGCAAAAGTAGTCTCTTTTCAAACAAGATCAGGAAGTCCCCTTAGAGCCCTCAAAGAGAAACATAATACAGGTAGTGGAGCAAGAGAATATCAAGAGGAAGAGAGGAAGAGAGGAAGAAGAAGAGGAGGTGAAAGAGGAGTCCTCAAATAATAAATCTACAAAGATGCAAGCTGATCATCTTAGTCACCCACGTAGTGTAAGGAACGACATCAAAATCGAAAGGAGATCATGCAACCATGAAGAGGACAGCAACACCAGGAATGAAATAACCGGAGACAACAATTTCGCACTTGGGGTATTTGATTTCCCCTGGCTGAAAGAAGAAGGCAGCAGCATGATCTCAAAGGCAGACGAGGAGGAGTGGTGTTTAGAGGACACAATATTCTCCTCATCTCTCTATTACAGTACAACATCTGCCGCTGAATTTTCTGGACAACACTTGTGGGAAACCACTCCAGAAGCCACGTGCATTGGATCATGCATAGACGTTCCGGTGGACAAGTTTGAGGAGA | |||||||||