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mature miRNA: GAGGTGAGCCGAGCCAATATC
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|31331518|gb|CD425255.1|CD425255 SA1_11_C04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_11_C04_A00

GAGGTGAGCCGAGCCAATATC
.|.|.||||||| |||||| |
TTTCGCTCGGCTGGGTTATCG

EST sequence (targeted fragment marked with yellow):
GATTTAGGTACAAGTAATGGGAAGTCAAGCTCCCCACTGCCGCATCTTCTAAGCTGTGGCATACTACCTCGGATATCGAACGTGAATTGGTGCCTATGCCATCCCAATCCAGTGAAAAAAGTGCATTCATCATCCCTTCCCGATAATGTTTATATATACAAAGCAAATACTCGTAAGAGCACTGGGGTTTCGATTATCACCAACGCCATGTCTCAACGCAGACGCCGTCGTCATGCTTTCGACAAACCATCCAATAAGAAATTCGAGTAGGACGAAACAAACAAGGAAAAAGAAAACACGATCTTGGCGTGGTCAATATCGATTAATGGCTTAAGTCGCTTAAGTCGAGAGCTAACTCTCATCGTCCATAGCAGAAAATTCGATGTGATAATGCTATTGGGTCGGCTCGCTTTTGACAAAAGGTCATCAAATCCGAAGCCTTCGCTGATGATAGGGGTCTCGGATGTAAGCTTGTCATGAGATAAACGGATAGATCCTCGGTTACATCGATTAGTGCTCGTAGCCAGCACCACGCTGCCAAGGGCTGGCATTGTTCTGTGAT