| mature miRNA: GAGTAAAAATGTGAACCGAAT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14982873|gb|BI308546.1|BI308546 EST529956 GPOD Medicago truncatula cDNA clone pGPOD-7M23 5' end, mRNA sequence GAGTAAAAATGTGAACCGAAT EST sequence (targeted fragment marked with yellow): ACGAGGGAGGAAGACATAATTCCACTTGCAGGTGGAATTTAGTTTGCAAACATTGTGTTTTGTTATCTAGTACTTATCTTTCTGGTATGAAGCACTTACATAGACACTGGACACGACACTGGCATGTGAAACCGTAACAATTTTAGAAGATAGAAGTAATTGAATGTAATTACATATGTTGGTGTCGTCTTAGTGTCGGAGACCAAACGCGCCTTTAATCGGTATTGTTTGTGCTACAAAGATATGAAGTCTAACTTCATGATTTATGATTTTCTTTCTTAGGGAACTGGGTATTGGAATAGTTGCATATAGTCCTCTTGGGCGAGGATTCTTTTCAACAGGAACAAAGTTACTCGACAACTTGCCACAGGATGATTACCGGAAGGTTTGTGGAAAGACTGCTTTTACAGAAATTCATGTGAATTACTTCTTCGTTTTGTTAATGATCATATTAGTCGTTTTGAGGAATTATGTATACTTATTTTCTGTAGCGATCTTCATTACACAATAATAGTGTTCACCGACTGATTCGCCATGATCAGAATTACCAAATTTGCTTATGTATATTCAGTTGACTGTAGTTCAAAATAAATTATAGTCGGTGTACATTTTTAGTCCATAAAATAGTTTGGGAATAGGCGAACAGAAGATGACACTGTAAGTTGATGCTAGTGAACACAATTCAGAACTTTATAATACAAACAGGGTCCATGGGATCAATGCGTGGTGATTACTCCTACCATTGACCCAAGAATTCACTGTACTTACTATCCTTTCACTTCCCCTAATTAACCACTTAATTCTAACATTGATATCTGACCCGCG | |||||||||
gi|157981172|gb|EX529444.1|EX529444 MTGland_A054_2007-06-25/MtGland_A054_D07_029_1 Medicago truncatula A17 glandular trichome Me GAGTAAAAATGTGAACCGAAT EST sequence (targeted fragment marked with yellow): AAAAANNTNTTCTTCTCCCTCCATACTTTCACTTAGACATTAGGCAATATATTTTTCAAATAAACAAGTAGCTTAGCACAAGATAATCTAGGTAAGAGGTTCCTATGGAATACCATAGTCGTTTAGGGTGCTTAACACCTTCCCTATTCGAAACCAACCCCCGAATCCNAAGTCTCGATAAGGGTTTTTACTCATTTTTTCCCTTCCCAAGAATAAAAATTGAGAGTTCAAAGATTGACGATTCAAATCAATTAATGGTTTGACATCCGAAAATCGCGAGCACAGAAATGGCGACTTCNNTGGGGANTTAGATCCTACGCGGGTTAAACCCACCTTACTTTCTTTATTTTGTGCTTTATTATTTGTTTATGCTTTGTAAATATTTTGTTTACATGTTTACTTTATTACGTGAGTGGTGAGATAAGCTCTACACCCGAGCTTGAGGGAAACTTAANATAGGACGGCGGTATAATCATAGTTCCATGCCAAGAGTACTCTTCGGTATTGGCACATGTGATAACCCCACTCAACGGANGGATCTTGGAANTATATGTCGTCANGTGAGTACTCATGTTTGGCATGCTANTTTCANGTGACCTTTGAAGTTGAGGACCNTTANTCACCTTNAACCCCTCTTGGCCTTTTAGGACGTNNTGCGGTGGCTAATCNAGAGTACTCTTGAATTA | |||||||||
gi|157983316|gb|EX531588.1|EX531588 MTGland_B025_2007-06-01/MTGlandB025-_G10_034_1 Medicago truncatula A17 glandular trichome Me GAGTAAAAATGTGAACCGAAT EST sequence (targeted fragment marked with yellow): TTACGGCCGGGNNGGGTCACCTTTTTACGGCTCTGACTCGGCGGCCCGATGAAGGAGAAGTAAGAAGAAGATTCACAAGTAATCAAAGAATTCTATTCTCGTGTGCAAAAATCATTCACGTAAAGTATAAATGGTGAAGGCCATCTTTGCAATTTGAACATCTGGTTATAAGCGAAAGTTCTTATTATGAACAAAGTTGATTATGAAATTTAAACTTCATCAACTGTGTTAAGTTAAGGCCGCCCTAAGAGGACGCCCTAATTCGGTTGACATTTTAACTCATCATCCCAGTCAAAATCGTAGTCTTAAAAGACAAACAACGATATGAAGAAATTTACAAAATCATCAAAAATACTCACCATCTCGCTCGAAACATGAGAACGCCAATGAGATCACTTTAGAACTGAAGCACCACGCCTTGCACCAAGACTTGTGCTTGGGGGCTGTGGACCGTCATAATATTCCGAAGAGCTTAGAGACCCTCGGAAGGATCTTAAACGCCTTCTTAAGGACCTAAAAAGGTCCTTCAAAAAGTCTGTGGGTTCCAGACGCGTTCTCAAAAGACGTCGCATTTCTGGACCCNNAAAAAAAAAAAAAAAAAAAAAAAAAAANCNTGT | |||||||||
gi|20281122|gb|BQ144063.1|BQ144063 NF029E06DT1F1040 Drought Medicago truncatula cDNA clone NF029E06DT 5', mRNA sequence GAGTAAAAATGTGAACCGAAT EST sequence (targeted fragment marked with yellow): AAACCAGCAAGACGGGGCGGGCGCGGACGGACGGAGACGAGCGAAACAGAAAAACAAGACCGGAGTTTAGGGCAACAACAAACCAAAAAATTTAAACTCGTTAAACGGGAAAAAAAACAGATAGCATCAACTAATAGAGATATTTTATCGTTTCGATTATTACGATCATCCCATCCCCCACCTCAACGATATATACACAAGCGATCGCCAGTGCGGTACATCAGCCCGATCGTTCCACACCATATTTCTATTTCGTCTATCATTTTCACACCATTCCGTTCCATTTTTATTCTTACGTTCCCTTTGTTTCTCCATCCCGTCTACGTCGACGCGACGCGCCACCCCCATCCCCATCCCCATCCCCCGATCCCATCGCCAACCCATACCCGTACAGATGCCCCATAACGCAACACAAACAGCGGACTAACGCCAATGTTCATCATTTCCATTCCATTCCATTCCCTTGTTTCGTTTCCTCATTCCATACCATAGCCCAATTCCGATGGGTTATAGAATAAAAACCATCTTTGCCATATTAACGCGAACTAAGCGAAACGCCAGCGAACGCGAAGGGAATAGCAATACGAATGCGCGATGTGCCGTTAGCAGACGATCACGACGGAAACCGAGCGATAATCAGAACGCAAAGGTGGTGGCAACGCGGACGCCTTGTAAGGCTGCATCGGATATTTAATTTCTATGGTGCGTCTAAGTCCTTGTACTGAATATCTCGTCGTATAGTCATCGTCGGAGACGACGTTTAATGAGTGTTATACATGCTCAAACACACATTGCACGACGTCATCACATATCCACGATTCCGTTCGACATGATCGATATCACAGATCACACCATCACACTCACCACACACACCATTTTCGCACACACGTGCACGATTTCGCGTATAATCGCGCAGTATGCTACGACGCGCGATCCAGCGCGCGCGATGGTGGGCGGCGTCATCATCACTACTCGCACGCAGTATGCCCGATAGATAATACGCCGCTAGTTATCCATATCACAATAATCGACGAAACAGTCGCGATATATATTCATGTCCGCTCAGTTCGTCGCGCCACGATTGTCTCGTCGCTGCAGTTGATATCTGGTCCCCCGAGTCATATTGTTTATGTCCCGGTAGTTCCCGAATATGAAAGCACACGACGCGATAACACGTCTCGCCTATAACTACGACGAATAATCGCATTTATATATATGACGCACATTTCAAATACACGAGATAGAGCAGCAGCTAATTATGAGGGATCTGATATCGCAAATGATTGAACGATGA | |||||||||
gi|148766180|gb|ES612874.1|ES612874 MTGland_A025_2007-05-07/MTGlandA025_F09_035_1 Medicago truncatula A17 glandular trichome Med GAGTAAAAATGTGAACCGAAT EST sequence (targeted fragment marked with yellow): TACGGCCGGGGTANGGCTAACTATGGCATGGACATCTTGTGTCTTGTCCAAGTACTTAAAAGTGGGATAGTGGCACCTTTCAATGTTAGCCGAGGCCCTCTTGCTTTCACATGCTCATTGCATCATTGGAACCCGTACAAGAGATTCATTACTCTGAGTAATCATCATATGGTTTGCATTTTAACTCATAAACTCGAGTTTACATTTTTAAGGGTCAAATTAGTATTAAATATGAGTTAAAAAAAATGGTAAAATTGGATTTTCAATCGAGTTTAAGCGAGTTAATACGTAGTAAATTCTGTATTCTGTAAAATCGTCCAAGTATACATGAATATTCCGATTTTACCTTTTCAAAAAAAGAAAGACCCATTTATTTGGGGCCAATTTTTTTTTAACCATTTTTTGTAGCCCACACTTTTCTCAAACATAATGTTTCCACTTCTCCTTCCATCTGACACCTAAAGTCTCTAATGGACGGGTTCCGAANCCGACAAGAGGATTCTGACACCAAAAAGGTGATTCTAACGTCGACAAAGTCAACGTTTTCTTATTTCACATTCAACACAAAAAGGTCATCGTTAGCGTTTTCAACAAGAAAGATTGAACTTCAATATATATATATATATATGTCATGTATATAATAACTTTTATATAGTTTAAGATAATTAGGTAAAATTCGTACNAGTTTACAACTCAAGTTTACCNNNNAAAAGAAGTTGANGTAAACTTTCNAGTTGAAAANCCTTNCTANGGGAGGGAANAAANNNNTTTNAANCCAGCANGCAGTTANAA | |||||||||