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mature miRNA: GATACTTGCGAGGTATCAGGT
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88479617|gb|CI416888.1|CI416888 CI416888 Oryza sativa (japonica cultivar-group) callus UVB iradiated callus, immid after trea 

GATACTTGCGAGGTATCAGGT
|||||||||||||.||  ||.
CTATGAACGCTCCGTAAGCCG

EST sequence (targeted fragment marked with yellow):
CGTCAGCAAACGGTCTTTACTGATGCAACATAAGAAAAGACCAGTAATTCGAGTTCCACTGGATAAGAGTAACTTAACGTTCTAAGCTCATCCAAACAGGATATCACTGGATAAGAGGGATGTTCATCTATCTTGCCGAATGCCTCGCAAGTATCCTCACTATACCAAAAGTGTTCTAAAAGAACAAGATTCAATTAGCCCTCCCCTAAGATTCAATATGCCGCAGAANAAAATGAAAAATGTTGGCTTAATCCGACAACTGAACCATTT


gi|88845199|gb|CI084124.1|CI084124 CI084124 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa 

GATACTTGCGAGGTATCAGGT
|||||||| |||.| || |||
CTATGAACTCTCTACAGACCA

EST sequence (targeted fragment marked with yellow):
ATATAATATATATATATATATATGTTTAAACAATCTTACTATGATTCATACAGATCTGATAAATACTACAGCCCATGTATAATTCCTACCACCACAGCCTGCAATCAGGTACTATTTTCTCCAATGTAATTTAGGTGTTTCACTAACTCCCTACAGAACGCATACTGTTGTATTTATGGAAGTATTAACATTTGGCAGAGACACAAGGGTGGATTTGCGAGGATGGCTTGTCACCAGACATCTCTCAAGTATCTCCCTTCCATCTGCAAGCTCTTTACATAGCTTTCTGTGTTTGAGTTGTCCAAAGAACCCTGTTCCTGCACAATGGTGTGTAGTGTGCGGTGTACATCTCTTGCCATGCCCTTTGCATCACCACAGACATAAATATTACCACCCTGAGAAATGATGCTCCAAATCTCGGGAGCCTTCTCTGCCATTTTGTGCTGAACATACTCCTTTGAAGGACCCTCACGAGAAAAGGCTACAATCAATTCAGACAGCGCACCGGTCTCAACAAAATTGTTGAGCTCATC


gi|89190548|gb|CI392401.1|CI392401 CI392401 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J 

GATACTTGCGAGGTATCAGGT
|||||||||||||.||  ||.
CTATGAACGCTCCGTAAGCCG

EST sequence (targeted fragment marked with yellow):
AGCTACAGTTATCAATGTTTAAACAGGATAAGTTCAGGCTCTAGGGCCGCGTAACAGCATGACGCATTAAATGATCAAGTTCCACCGTTGATGAAAATTGTTGCCAGCAACGGTCTTTACTGATGCAACATAAGAAAAGACCAGTAATTCGAGTTCACTGGATAAGAGTAACTTAAAGTTCTAAGCTCATCAAACAGGATATCACTGGATAAGAGGGATGTTCATCTATCTTGCCGAATGCCTCGCAAGTATCCTCACTATACCAAAAGTGTTCTAACAGAACAAGATTCAATTACCCCTCCCCTAAGATTCAATATGCCGCAGAACAAAATGAAAAATGTTG


gi|88268563|gb|CI378498.1|CI378498 CI378498 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone 

GATACTTGCGAGGTATCAGGT
|||||||| |||.| || |||
CTATGAACTCTCTACAGACCA

EST sequence (targeted fragment marked with yellow):
CGCAGTCCTATATATGAATATGAATATATATATAAATATATATATATATATATGTTTAAACAATCTTACTATGATTCATACAGATCTGATAAATACTACAGCCCATGTATAATTCCTACCACCACAGCCTGCAATCAGGTACTATTTTCTCCAATGTAATTTAGGTGTTTCACTAACTCCCTACAGAACGCATACTGTTGTATTTATGGAAGTATTACATTTTGGCAGAGACACAAGGGTGGATTTGCGAGGATGGGTTGTCACCAGACATCTCTCAAGTATCTCCCTTCCATCTGCAAGCTCTTTACATAGCTTTCTGTGTTTGAGTTGTCAAAGAACCCTGTTCCTGCACAATGGTGTGTAGTGTGCGGTGTACATCTCTTGCCATGCCCTTTGCATCACCACAGACATAAATATAACCACCCTGAGAAATGATGCTCCAAATCTCGGGAGCCTTCTCTGCCATTTTGTGCT


gi|89178136|gb|CI391315.1|CI391315 CI391315 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone 

GATACTTGCGAGGTATCAGGT
|||||||| |||.| || |||
CTATGAACTCTCTACAGACCA

EST sequence (targeted fragment marked with yellow):
ATATAAATATATATATATATATATGTTTAAACCAATCTTACTATGATTCATACAGATCTGATAAATACTACAGCCCATGTATAATTCCTACCACCACAGCCTGGAATCAGGTACTATCTTCTCCAATGTAATTTAGGTGTTTCACTAACTCCCTAAAGAACGCATAGTGTTGTATTTATGGAAGTATTACATTTTGGCAGAGACACAAGGGTGGATTTGCGAGGATGGCTTGTCACCAGACATCTCTCAAGTATCTCCCTTCAATCTGCAAGCTCTTTACATAGCTTTCTGTGTTTGAGTTGTCCAAAGAACCCTGTTCCTGCAAAATGGTGTGTAGTGTGCGGTGTACATCTCTTGCCCATGGCCTTCGCATCACCACAGACCTAAATATAACCACCCTGAGAAATGATGTTCCCAATCT


gi|88228433|gb|CI227913.1|CI227913 CI227913 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s 

GATACTTGCGAGGTATCAGGT
.||||||||||||||| ||.|
TTATGAACGCTCCATAATCTA

EST sequence (targeted fragment marked with yellow):
ATCATCTAATACCTCGCAAGTATTACCTGATACGTGGTAGAAACGCATAATACAGGTTAAGTATCAAAACCTGATAACTAACCGGTATCATCCCATTCGAAAACGGGATTCCGTTGTATGACAGCCGCTTTTTTTTCTCTTTTCTTTTTCTCAAATGACATTAGATTTATATACCAACTTAGGGGCGCCAAGTGGCCTAATCAGCTGGTAGGTGGCCTGCCATCTTTAGAAAGATGGATGGACTAATCAATTGGCCTTGGGCTTGTCGGCGGCGGCGGCGACCCGGCCGTCGTTGCCGGCGAGCTTCATGTACTTGTCCTTCCTGGTGAGCGTGGTGCATTGGAACCCTAGCTCCTTGGCGATCACCCTCTGCACGTGGTTCGCCACCTCCACCGCGCTCCTCCCGCCGGCGACGCACGTCTCCTCCGGCCTCAGCGCCGGCAGGAACGTCACCTCGTACCCCGGCCGCGGGTTCATGTAGAAGAAGTAAGGGTCCA


gi|157651536|gb|EX451170.1|EX451170 SSH00885 Salt stress SSH library Oryza sativa Indica Group cDNA, mRNA sequence 

GATACTTGCGAGGTATCAGGT
|||||||| |||.| || |||
CTATGAACTCTCTACAGACCA

EST sequence (targeted fragment marked with yellow):
ACTCCCTACAGAACGCATACTGTTGTATTTATGGAAGTATTACATTTTGGCAGAGACACAAGGGTGGATCTGCGAGGATGGCTTCTGTCACCAGACATCTCTCAAGTATCTCCCTTCCATCTGCAAGCTCTTTACATAGCTTTCTGTGTTTGAGTTGTCCAAAGAACCCTGTTCCTGCACAATGGTGTGTAGTGTGCGGTGTACCTGCCCGGGCGGCCGCT


gi|117233088|gb|CT854931.1|CT854931 CT854931 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD 

GATACTTGCGAGGTATCAGGT
||||||||||| .|||||| |
CTATGAACGCTATATAGTC-A

EST sequence (targeted fragment marked with yellow):
ACATACACTCCTCCCTAGTCACCTACGAATTCCGCCAGCGGCAGTGGCGGCGGCGGCGCTCCTCGCCGCCGGCCGCTCGCCGCCTCATTCCCGCCGTTCCCGCGCCTCCCCGCGGAGTAGGTCCAGTTCCTAGCAGCCAGCGCTTGCTGCCTGCTGGCCTTTCAACTGCCTCCAAGGCTCCGACCATAGCGCGGCGCCATCATCATCACAATCGTCCGCTACACCCTACAAATCGCGGAGAGGGTCGCGTCCTCGTCGAACTAACGCCGCTACGTCAACCTGCTCGCTGCTGCTTGCAGGAAGACACATCCAGAGCTGTGCTCATGAACTGATGAACTTGAGAGCTTGCGGCTACTAGCACACACCGCAGGGAGGGGGGGGGGGGGACAAAGAGTCACAATTTAAGAACTTGCAAAGAAGATACTGCTAAAATCGCTCTAATTATCAAACTGCAGGGGCAAAAAACCAAGGACTCTCAGAAAAACCGGGACGCAATCTCCATAATTTTTAAGCCGTGCCCTAATTGCTAGGGAACACCAGAAAATGGACTAAGCAAGGACCTGAATCACGGCAACTGCAGTGGAGATGCACGCGAACTACTCCCTTAATGCTATCCCGTCCGACTAGGCGTATTTATTGAAATCTAACTAAATCGGACGGGACGTTTGACTGTCGAGAACTAAATAGAGTCTCTCACTGATATATCGCAAGTATCTAGACTCTACCAGATTTAGGTTGATTAGTCAAATGTGTTACTATCACAACAGTCCCAATATTCCATGCTAACATGTTCTCGATGAGGAGCCGGAGGTTTTTTCTGTACTTGACCACCGGCCATAAGTATATATACGATGCACTAAAAGGCATGAGACGCACTATACTAAAATGCAAGGCCACCGAAACATATATTTATTTGGATTTAATCTGAATAACATCAACGATCGTTCTTCCTCAAACAATATGTTAATAGATATGATAACAACATACAAAAAAGATTATTGACTAAGCATTTAATACTTTCATCTTACTCGTTGATTCTGCTATTATCATCAGATTTGCGATATTGCTCACCTACGATCCATAGGCTATGCGACTTGTCAGTACGATTTGTACTACAATAATACATT


gi|88367880|gb|CI570619.1|CI570619 CI570619 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone 

GATACTTGCGAGGTATCAGGT
||.||||||||.||| ||| .
CTGTGAACGCTTCATCGTCGG

EST sequence (targeted fragment marked with yellow):
GATTGTATGCTTCAATAAGCTTAGGCGTGAAGCGCCTGCATGGTGGGCACCATGAGGCCGAGAAGTAGAGGGCAACGGTGCTTGCCTCGATGCTGCTGATCTTCACCTGCAGGACAATAAGGCCTTCAGAGACGCAGTTGTTTGGGACTTCCTGTTGATCTCATCTTATCACTACCAATAAGATCATCACCAAATCAATATCACACAAGCATGGGACGTCGGCTGTAATGGGATCGAGACGATGCTCCAGCTCTCCCCCCCACACCCCCGGCTGCTACTTCGCAAGTGTCGGTCTTGCCACACAGATGGGATTTTGGCAATCACGCTTCACTCTGTCTCTACTTTAACATGAGGTAATCAACTTAATCATTGTTGCTTAGTATTCTTAGTAATGCTCATGTTAAAAAACATTAGCAGTATATTTTCATCCAGGCACGATTTGTGAGTGCGATATCACAACACTGTTGAT