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mature miRNA: GATCCCGCCTTGCACCAAGTGAAT
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88963372|gb|CI028388.1|CI028388 CI028388 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

GATCCCGCCTTGCACCAAGTGAAT
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CTAGGGCGGAACGTGGTTCACTTA

EST sequence (targeted fragment marked with yellow):
TTAACGCCGACAGATCATAGATAGAATAAGTAATCGAGAATTAGGCACCAGATCTAGATCTGAAAAAAAAATTAAATCTAATACAAACGCGTACGCCCCACACCTACGAACACGAACACGAGGAGGATCAGCAATTCGATCCGATTCATCGCTAACCCCGTCCCGATACCGACCCAGAAACGAAGGAGAGACAATAAAAACAACCAAGCAGCGCAGCATCGGCGGCGGATCGGCGGAAGGAGGGCGCTACGCCGGCTCCGATTCACTTGGTGCAAGGCGGGATCCGGCCCCGGCAGCGGCGGCGGCGGGTCCCGATCTGCACCAAGCGAGCCCGAGGCGGCGGCGCCATGAGACGAGACGAGACGCGCGGTGTCTCTCTCGAGAGGGAGACGAGGTGGTGGAGGAGACGTGGCTGCTACGGCGACCGCGTCTTCCTCGCGGTGGCGGTGGCGGTGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTAGAGCAGAAGTAACACTTCCGTACAGGCCTAGAAGTAAAGGCAACATCCACTGAGGAGCAGTTCTTTGATTTG