| mature miRNA: GATCGATGAACCGCTGCCTCA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109864995|gb|DW493971.1|DW493971 GH_RMIRS_099_G09_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq GATCGATGAACCGCTGCCTCA EST sequence (targeted fragment marked with yellow): GTACGGCAATGGCGAGACTACAATTAGATTTGTTTTTTTCTTGGAATTGTTTCTTTTTTTGCAGTTCTTTTATTCGTATAATACATTGCGAAGTTTTTATTTTCTCTTAATTAGTTTAGATCTGTTAGATTTGTATTTTCTTTCTGTCGATTCTTTATTTTTTTTATGAGAGCATGGAAAATTTTTAGCGTTGGGGTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAAACCTCTGCATCCAGCGCCTTAACTCTCCATGAAGTTTTATGTTAGTTATTAACAAAATCTGTTTTTTGGTTGCAGAAATTCTTTTTTTTTAAACTATAGATCTTGATATAATGAGTAAATTTTTATTTTCCATTACTTCTGTATATATTACCTTTTAGAGTGTTCAAAGATTTTACTAAGACTAACTATTAATGGCGTAATGTTTGGTGGCTGCAGTGAAGCGGAAGGGGCTACGTTATCGTTTCCCAGTTGTCGACCCTACCTGGTTACTGATTATTTTTCAAATAAAAGTTGCAAATATTTAATCACTATTTTTCCCCCATTTGTCTCGTCCTCTGCCTGATG | |||||||||
gi|109864996|gb|DW493972.1|DW493972 GH_RMIRS_099_G09_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq GATCGATGAACCGCTGCCTCA EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAAATGGGGGAAAAATAGTGATTAAATATTTGCAACTTTTATTTGAAAAATAATCAGTAACCAGGTAGGGTCGACAACTGGGAAACGATAACGTAGCCCCTTCCGCTTCACTGCAGCCACCAAACATTACGCCATTAATAGTGAACACTCTAAAAGGTAATATATACAGAAGTAATGGAAAATAAAAATTTACTCATTATATCAAGATCTATAGTTTAAAAAAAAAGAATTTCTGCAACCAAAAAACAGATTTTGTTAATAACTAACATAAAACTTCATGGGAGAGTTAAGGCGCTGGATGCAGAGGTTTATCGATCGATTCATGTATTTGTGTTATTCTCACAACAAAATTCTCAGGAAGAGATCGATGAACCGCTGCCTCAATAATAACGCTAAAAATTTTCCATGCTCTCATAAAAAAAATAAAGAATCGACAGAAAGAAAATACAAATCTAACAGATCTAAACTAATTAAGAGAAAATAAAAACTTCGCAATGTATTATACGAATAAAAGAACTGCAAAAAAAGAAACAATTCCAAGAAAAAAACAAATCTAATTGTAGTCTCGCCATTGCCGTACT | |||||||||
gi|84149130|gb|DN780430.1|DN780430 G.hir-Cotyledon 958 cDNA from Cotyledons Gossypium hirsutum cDNA, mRNA sequence GATCGATGAACCGCTGCCTCA EST sequence (targeted fragment marked with yellow): GCACGAGAGTGTAGCGGCTGCTCCTGCACAAGGGACACCGCCTGTTGAACCTCAGTCATCTGCGAATAATCAAGGTGAGGGGGCTAAACAAGCCTTCTTTACCATGATGAATGAGTGGGTCGCGCAATATGCCCGAACCAATCCGGCTGTCCAACAATTCCCGAATTGGAATAATCCACCCCAAGAGCCCGTAATGCCATCAGTCACTGATTCTGGGAGGCTGAGTAAGCCACCTGTAGACTTGATTAGGAAGCGCGGGGCTGAGGAGTTCAGGGCCATAGTTACTGATGATGCTGAAAGGGCCGAGTTCTGGCTTGATAACACCATTCGGGTGTTTGATGAACTGTCATGCACACCCGATGAATGTCTAAAGTGTGCTATATCCTTGTTGCGAGACTCAGCCTACTATTGGTGGAGGACCCTGATTTCCATAGTCCCAAACGAACGAGTAACTTGGGACTTCTTTCAGACGGAATTTCGAAAGAAATATATTAGTCAACGGTTCATTGATCAAAAGCGTAAGGAATTCTTGGAACTCAAGCAAGACCGTATGACAGTATCTGAATATGAACATGAATTCGTAAGACTCAGTAGGTATGCCCGGGAGTGTGTAGCTGATGAGGTTGCTATGTGCAAAAGATTCGAAGAAGGATTGAATAAAGATTTAAAGCTACTAATGGGTATTTTGGAAATAAAAGAATTCGTAACACTAGTCGAACGAGCCTGCAAGGCGG | |||||||||