| mature miRNA: GATGATGCTGCAACAGCAGC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73896505|gb|DT499243.1|DT499243 WS0117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_L13 5', mRNA sequence GATGATGCTGCAACAGCAGC EST sequence (targeted fragment marked with yellow): GACACTTTCTCTTCTCTTTTGCATTCACCCCAGGAAAAGGAAAGACACAATCTTTTCAGTTTTTATGATCCTTCACTTTCTCCCCCATAAAATTAATTAAATCTCTCACTTGCGCTGCTGCTTAATTAACAAGTTTACATTATTAATATTAAATAGAAAAAAAAAAAAACCAAACATCGTCCTCCTAGTTTGTTCACAATGGCGGGCATAGCAATAGTATTAGATCTGTTGTCAAGGAAAAACCCTTCTTCTTATCCAACCCACTTCTCGGCCTCCGCTGCCGCCGCCTCCATCGCCGCCTCCGCCGCCCCTTTTGCTTCTAGGTTCCTGTTCGGGCAACCCATGATACCAGTTGCTTACTGTGATGCTGGTGCAGCATTGTCTGGTGACTATATTTCTAGTATACGAAGAGCATCTGCAGATATTTTTCAGAAAGGCTCTCTGAAATACACTACCAAGGAGTATTATATTGAGTTGAAACCTCTGTTTTCAGCTTTTGAATGGAAGCAACTTGCTATGACATCCTTGAGGTCATTTTTGATGTTCTATTTACCTCTTCTGGAGCCTAGTACTAATA | |||||||||
gi|73884556|gb|DT487294.1|DT487294 WS02533.B21_E23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_E23 3', mRNA sequence GATGATGCTGCAACAGCAGC EST sequence (targeted fragment marked with yellow): GACACCCGACTTTTAAAGGTGTTAGGTTACGGAGTGGAAAATGGGTATCCGAGATCCGGGAACCACGTAAAACTACGCGTGTATGGCTCGGTACGTATCCAACTCCTGAGATGGCAGCCACCGCCTATGATGTGGCTGCTCTAGCGCTTAAAGGCACCAACACGCCACTGAATTTCCCGGAATCAATCCTTTCCTATCCAACACCAGCCTCAGCATCCCCTAGTGATATAAGGGCTGCAGCTGCTAGTGCAGCATCAGCCAGGTCACCCAAGCGTGAAAGTGGGCCAAACCCTGAGATGGGCCAGCCTGAAACAGAAGGCTCATCATCTATTATCACTGCTGATGTTCAATCAGGACAGGAAATTTTCGACGAGGAAGAACTTTTAAACATGCCCAATTTGCTAGTTGACATGGCAGGAGGAATGCTAGTAAGCCCACCAAGAATAAACACACTATCTTCTGATGATTCACCAGGGAGTTCCGATGCTGAAAGCCTATGGTCCTACCACTAAAGCAAACCCAAACAGCTTCTCCATGGAGAATTTGCTTCTTGGTTTTGGTCAAAGGGAGAGGTTTTGGTCCCATGATGTAACAAAAGGTTGGCTTTTATTAAAGATTTTTCTATGGGGTAATAGGCAATGGAGTGTTGTGTAGATAAAGGTAAAAACTGGTTGGTGAATCGATTTTGCTGCCACATTTGTTAGTTGTATATATTTAAATGTGTCAGCTAGAGCCAGAGTACGTCTCTCTTTCCATCTGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73885930|gb|DT488668.1|DT488668 WS02537.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_B09 3', mRNA sequence GATGATGCTGCAACAGCAGC EST sequence (targeted fragment marked with yellow): TGCTTTCACCTTTGCATTGGCATGATTACAAGAAAAAATATGGAAAGCTAGAGGACTTTGTGGGTGGTCACCCAGAATTGTTTTTGATCGAGGGTGACTTTATCCAGCTTCGGGAAGGAGCTCAAGAAATGATAGCTGCTACAGCAGCTGTTGCTAAAGTTGCTGCTGCTGTTGCAGCATCATCTCCTTACTCATCATTCTTGCCTTCTGTGGCTGTTACTCCCATGGCACAATCTCATCGACTTAAGAAGGTTCCGTCAATTGAATCAAAGTTTTCTAATGGTGTTAATTTTGGGGTTGCTGGAGGCATATCAAATGTAAAATTTTTGAGCAAATCAAAAGATTCTCAAGAACTAAATGTGCCAGATTTTGATAGATCCAGCGTAAGCAGTACTCAAAGCAAGGGCTCAATTCATGGGACATCTAACTCAATTTATACTGGAAAACAGCAGAGCAGGACAACTGGAGCTGCATTAACTTCTAGAAGATAGTATGGAGGCAATGTCCAACATATGAATGAATTCATGGAGTTAACAGGAGTGCAGATTGGGCATTTATGGGAGCGATCTGTGGTAGAATTGTGCTCTTGATGAAATTGCCAGCCATCTTTTGCTTTTGATAGAATCCCCCATTGGACTTAGCTGATTTTTTTTTATCCTCTTTAGTTTTATGCTTTTGGAAAAAACCTGCTTTTTGTGTGTTTATGATACCGAAGACGAACTCGTTCAACTTTCTGCATTGATATTCATGCACACAATTGCTTCTGTGCATTTGATAGTCCATAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|24070221|gb|BU878697.1|BU878697 V050D06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GATGATGCTGCAACAGCAGC EST sequence (targeted fragment marked with yellow): ACTTGCAAAAACCCACTTGGAAAAAATCATCAAACATCAAAAGGGTCTGTCTCATCAGTTCTCAGAAAAAAAATAACAAATGGGTGCTAGTATCACTCTAGGCAGCACCAATTCTTCAGTGTCCCAATCCCATTACCACACTCACAGGGTTTTCTTGTTTTGCAACTACATTCTACTTGGAGCAGCCTCTAGCTGCATCTTCTTAACCCTTTCGCTTCGCCTGGTACCTTCAATATGTGGCTTCTTTCTCATTCTCCTTCATGTCTTCACCATTGCTGGGGCAGTTTCAGGCTGTGCTGCAGCGTCATCCGGGACTAATAGGTGGTATGCTGCACATATGGTGGCCACAGTGTTGACAGCCATATTTCAAGGGTCAGTATCGGTTTTGATTTTTACTAGAACTGGGGATTTCCTAGGGAACTTGAAGTCATACGTGAGGGAGGAGGATGGTGACGTCATATTGAA | |||||||||
gi|73867033|gb|DT469771.1|DT469771 WS01918.C21_N10 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01918_N10 3', mRNA sequence GATGATGCTGCAACAGCAGC EST sequence (targeted fragment marked with yellow): GCTTCCCCATTTCATCGAAAGACTCAAAGGCCATCTATCCCTTTCATTTTATATCAACATGGACTTCTCTTCTTCAAAGAAAACCATGAGAATTTCATTAGCAGTAGCTGATGCAGCATCATGTTACTGTGCTATGGTCCTATTAGGCCTAATATTATTGGGGTCTATTAGGGAGAGTTCTATGACAGAGGAGCCTGTCAAGGGGAGCCACTTTTTTGACAGACCCTGTGATGAAATATATGTTGTCGGAGAAGGAGAGACCCTCAACACCATCAGTGAAAAGTGCGACGACCCGTTTATAGTGGAGCAGAACCCGCATATCCATGACCCAGATGATGTTTATCCTGGACTTGTTATCAAGATCACCAGTTCAAAGTCAAGGAAGATGATGAAGAGGTAGTTCTTGGAGATGAGATACGGCTTCTTGATAGGAATACAGATACCAAATTAATTAGCGTGCTTGTTTTTTTAAAAAACTTCTTACACACATGCTTTAATTTCTATTTAATTTTATTTACTTTGTAATAGGAAAAGAATTATATATATATATTTATACCATAGAGTTTTCAACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73888295|gb|DT491033.1|DT491033 WS02546.C21.1_J24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_J24 3', mRNA sequence GATGATGCTGCAACAGCAGC EST sequence (targeted fragment marked with yellow): GGACAATTTGGGAGATGGCCATTGTAGTTTTGGTGGTTGTGAAATACCCATCAAAGAGAGACAAGCGAAGGCTGAGGGCACTGCTGCTGCACGTATGGGTTTAGAGACGCTTCATGGTCTACCAATAGCATCGAGGAACCTTCCAACATGGTCTGGCATGTTCCCTGGTTTAGCATCAAGCTATGAGGAAAGGACTCCGGAGAAGAGGTTTGAAGCAGTTTCTCCACCGAGATTCTCAAGCTGGCCATGGCAGATAAATGGCAGCAACAGTGTTGCTGCTACAATGCCACAGCTCTGTGTTGCAGCATCATCAGGATTCTCTTCTTCGACCAAAACTGTTCCTTCAGCTACTCTTCCATTCAACCAACAGAACCATTTCGCCAACAACAACCCGCGACTTGCAGCCTTCACCACATCTGCCACCAACCCCTCGTTTTACTACTCTTATACGAGCTAATTAACGTTAACACCTTGAGTGCATTTGCCATTGTGCTAAATTAAGCGAGCAAGGGAACTGAATCAATGGAGCCAAAAAA | |||||||||