| mature miRNA: GATGATGCTGCAACAGCAGCA species: Populus tremuloides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27411296|gb|CA924366.1|CA924366 MTU7CL.P4.H02 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA sequence GATGATGCTGCAACAGCAGCA EST sequence (targeted fragment marked with yellow): AAATTTGCACCCTGAAATTTGTCAGCTGCTTCCTTCATGCTCTGCTCAAACCGTTGCTTTAACTCGACTTCCCTTTCATATTTTTTCTGAGCTTTCCCAACAAACCATTCCTTGCCATCACATTTCTTTCCATTAAGAGCCTCCGCTGCTTTAGCAGCATCATCTGCATTCTCGAAGTTCACAAATCCAAAGCACCTACACTTTCCATCACCATCCCACATCACCACAACACTGGTGATAGTTCCAAATTCACCATAAGCTTTGTTCAAATCCTCCTCAGTTGTTGTTTCGGATAGATTCTTCACAAAAACATTGTTGAATCTTGTCTTGTCAGTGGCAGTCTCCCTTTCCTGCTTGCGAAGGAAAGGTCCCACGTAAACTTGCTTATCATTCAACAGCATGCCATTCAGTTTCTCGATCGCTTTTTGAGCAGCTTAGTCCCTGTCAAACTGCACAAACCCATAGCCTTTTGACTGGCCAGAGGGGTCAGTAACAACCTTGCAAGAGAGAATGTTCCCAAATACTGAAAATGTGCCATGCAGTGCTTTGTGGTCAATTGCCTTGTCCAGATTCTTAATAATATATGTCCTGCCACACTTTTGCGAACACATCGAGCACGATGGGAATACATAACCCTGATTGGACTTCGCTTCAGTGGAGTGAAATGCAGCACTGCCAATGCCCTTGCAGCATCTTGAGGATTGCTGTAATTAACGTAACCATAACCAAG | |||||||||
gi|33184739|gb|CF119615.1|CF119615 MTU10CS.P4.B07 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence GATGATGCTGCAACAGCAGCA EST sequence (targeted fragment marked with yellow): ATAACTTGGATCGCTGAAAGTAACAAGTCCAGTGCCCTTGAAGTCACAATTCCAGTAGTTTCTCCCATGGATTTGATAATAAACATTCATGGCATAGGACGCATGTGCATGAAGCTTATCTGGTGCAAAACAATCACCACTTTCATAAATCTCTCTGCAATCCACACCACCTGGTCCGCAGCAAAAATCGAGCACAGCTTGAAGCACCTTCTCATCTGCATGAGGTTTAGCCACACACCAAACTGAAGGACCTCTTACTCCACTTGACATCTTCTCCCCAAACCCTAATGTCCCTCCATTGCCACTACAAAACTGGCAGCTCAAATCCACTTCATACACCTTAGATCCATCCCCGTTAAACATCCCAAAATTCCTCTCACTAACACCACCCTCTTTTTTATTCTCATTAAACAAAGCAAACACAAATATCTCTATGTTCTTTTTAGGACTCATTGGTGTCCCTTTATTAGACTGTGCACGTTCAATCAACCTAGTATTGTAAGTCTTCGCGTTTTCTGGTGTGGCAGCGTCATCACCTGATTCACCCTTTGATGGCCACCCGGATTCTGATATGGTCATCTCAACTGTCCGATTACCAAACCCTAATGCAATAATAGCTGACCTCACAGCGTCA | |||||||||
gi|27423149|gb|CA934669.1|CA934669 MTU5TS.P22.B02 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence GATGATGCTGCAACAGCAGCA EST sequence (targeted fragment marked with yellow): TGTCCGTTCATCTCAACCATGGCACGCATTTGTTCATTTTCATCAGCAAACCTAACAAATCCATATCCCTTTGAACGTCCAGTAACTCTATCAGTAACAACTTTTGCACCTTTCACGGATGAGTAAACATTTCTAAATGTTTCTTGTAGGAGGTAATCATTGACATCAGCAGCCAAATCTCCAATGAAAACTGTATAATCAGGCCCATCATCTTGGCGCCTCTCTCCGGCACCGAGGGTAGCCCAGTTCAGCCGGAAAGTCTGCTCACTGTTTGGCATTGGTGTTCCATCGTATGTTTGCAAAATCCTCTCTGCTGCAGCATGACTAACAAATTCAATAAAACCATAACCCTCTGGGTAACCTGTCTGCTTATTACGAATAACCTTAGCTTGGACAACCTCTCCGGTGTTAGAAAAGATGCTGAGAATATAATTCTCATCCATCCACTGCTGCAAATCCCCGATCCACAACGACTTGATCTCGTCTCCAACAGCAGCACTTCCGGCGGCCGAACCATACTGGGTCGGAGGAGGAACAGGCGGCGGATTCCAGCCAGCAGGAGGAGGCACCGGTTGCGATTGTTGCTGTTGCTGCATCATCCATTGCTGCT | |||||||||
gi|27420577|gb|CA932097.1|CA932097 MTU4TA.P26.H01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence GATGATGCTGCAACAGCAGCA EST sequence (targeted fragment marked with yellow): CGAAACCCAATCAACAATGGAACTGCTGCTGTTTCGACTAAAGCATTGATCTCATCTGAGTAGACAAATATGGTTACCGGAGGAAAAACTTCTGAGAGTCCTCTCCTTGATGAAAGATCTCTGTTGACTTGCATAGTTCGCACCATTCCAGCTGGTGGCCAAATTCGGATGAATTCAACGCTACCAAATAGACTTGGCAAGATGCTTTCACCTTTGCATTGGCATGATTACAAGAAAAAATATGGAAAGCTAGAGGACTTTGTGGGTGGTCACCCAGAATTGTTTTTGATTGAGGGTGATTATATCCAGCTTCGGGAAGGAGCTCAAGAAATGATAGCTGCTACAGCAGCTGTTGCTAAAGTTGCTGCTGCTGTTGCAGCATCATCTCCTTACTCATCATTCTTGCCTTCTGTGGCTGTTACTCCCATGGCACAATCTCATCGACTTAAGAAGGTTCCGTCAATTGAATCAAAGTTTTCTAATGGTGTTAATTTTGGGGTTGCTGGAGGCATCTCANATGTTAAAATTTTGAGCAAATCAAAAGATTCTCAAGAACTAAATGTGCCAGATTCTGATAGATCCAGCGTAAGCA | |||||||||
gi|27416335|gb|CA927856.1|CA927856 MTU6TR.P13.G07 Aspen root cDNA Library Populus tremuloides cDNA, mRNA sequence GATGATGCTGCAACAGCAGCA EST sequence (targeted fragment marked with yellow): AGGGAACACAACCAAACGAGGGAAGCACTCTATGGATCATCAGGAACTTTACAATATTAAGAAAAACAAGGCCAATCTGGTTTGCAATATATTGTTAAGTGAAGATAGAACCACTAGTTCCCTAGAGAATCAAACAGCAGTCAGATGATGAGTGATTGGGTTCTCTGCTATGGCTTCCTCATTTTGGACCTGGCATATTCTATGTGCATGCCACCTCTGTCTGATGATGGTAAAGTGGTGTCTTGAAGATTCTCCATGACTTTAGTAGCTTGTTCAATTTCCTCAAAATCAGCAAAGGCAACTGGCATTCCACCTTTTGCACGAATTTTGAGCACGTGAAATCCAGGATATTGTGATAGAACTTGCTTCAGTTCATCTTCAGTGCAATTTGGACCTAGATTTGCAATAAACAAAGTGGAACAAGGACGGAGACCTCCTTCTGCAGTCCTCTCCCCTATCTCATTTACTGCTACTGCAGCATTATCAGGATCACTTGCTGCCTCACTCTTAGCATTTTCTGAATCACCCTGGTAGGCAGTATCAACATTGTTCATTTCAGGATCTTCTTCAGGGTCGCTTTACCATCATCACTTGATGTT | |||||||||