| mature miRNA: GATTGAGCCGCGCCAATAT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164315690|gb|ES814797.1|ES814797 UFL_236_07 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence GATTGAGCCGCGCCAATAT EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGAAAATANTGGAGTTCAATGCTGGTTTTGGTGTGGTGGATCATGGTTTCGGCTTCGATTCCATTACTAGTAGCGTTAGCTTGATCAACAACGTCGACCCTCCTATAAGCTGCTCTGATTTTCCGGTGACATCAAATCCGCCGAGTCTTTTGCCGCCTCCTTCGCCGTGTGTATTTCCACAACAGCAATCACAGCTTCAGGTTATGGATGAAAAGCCACAGATTTTCAATCCGCAGATGATAATAAACCAGAATCAAGCTCGGTTTACACAAAACCCGACCATGTTCTTACCTCTTTCGTATGCTCAATTGCAAGAGCATAGCCTTTTATCGCCTCCGCCGCCGAAGCGATTCAACTCCGGTGGACCTTTTTCGGGTTCGGGACCGGAGCTTTATCTAAGGCGTCAACAGCAACAACAGATCCAAATGCTTCAGCAAAGGCCAATTACAGGGAAACCGAANATCGTTACGGATGATCTGGCGAACCAGCAGCTTCAGCAGGCGATAATTGATCAATTAATTCAGGCCGCAGAGCTGATCGAAACCGGTGATCCGGTACTCGCGCAAGGGATATTGGCGCGGCTCATTCACCAGTTCTCCCCTGTAGGTAAGCCCTTTATAAAAGCTGCTTTCTACTTCAGGGAGGCCTTACCATTATAACTTCCTTTGAACACTACCAATACTTCAGTAATGTCCAATTATAACATGATATTCAAGATTGGTGCTTACAAATCGTTCTCCGAAATATTTCCAATCCGTCAGTTCCCAAATTTTACTTGTAATCAACGGTTACCCGAGGTTTTCAAAGGGGGGAAAAAGGTTCCTATAATCCAATTTTCAAGTTTGGTTTTGGGGGGAAAAGGGGGTTTTTTTTGAAGCAAGAAACTTGGTTTTAAAAAAAGGGGGGGGGGCCCTTTTCATGAAAAATTCCGGGCCTTTGGGTTTCCCCTTTCAAGTCCATGAAGGATATCCGAACTCGGGTTTCACAATCCGAAAAACCTTAAAGCATTTATGGCTAGTGGAAATCAAAAATGGGATTTTTGATATCCGAAAATCATGAAGCCTTTGAAGGCCTTGAAATTTCGGGGTTCTTGGCCGGTTGCCCTTTTTCCCCTTGGGGCAGAAAAAAAAAAAAAAAATTGGGGGGTTTAATTCCCCCCCCAATCGGGGTTCTTTTTTTTCCATTTTACCCCTTTCCCATCCCTTGGCCCCCCGGGGGGCCCCTTTCTTTTTTTTTTTTTAAAAACAAAAATTTATTTTTCCCCCCCCACAAA | |||||||||
gi|84173713|gb|DR462361.1|DR462361 CM107B05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence GATTGAGCCGCGCCAATAT EST sequence (targeted fragment marked with yellow): CGAGGTAACTGGTGATAGACTTAAGGAAGCACAACATATTAATAAATCTTTGTCTTCCCTTGGAGATGTAATTTTTGCTCTTGCACAAAAGAGCCCTCATGTACCATACAGAAATAGCAAGCTCACTCAAGTACTTCAAAGCTCTCTCGGAGGACAAGCAAAGACCCTTATGTTTGTGCAGCTCAATCCCGATGTCACTTCGTATTCTGAAAGTTTGAGTACTTTGAAGTTTGCAGAACGAGTTTCCGGAGTTGAGTTAGGTGCTGCACGAAGTAGCAAAGAAGGGAAGGATGTTAAGGAACTAATGGAGCAGATGGCATCTCTCAAGGACACGATAGCTAAAAAGGACGAGGAGATTGAACGGTTGCATTTACTAAAAGATCTAAAAAACGGATACCCCGGGATCGATGGTGAGCAGCCCGGAACAGGCTCTTTGAGTGATAAGCAGTCTGAAACTGGTTCAACGGACGATGAAAAATCCGAAATAACTGATGCTGCTCTTTCTATGGGAACAGAAACTGATGGCTCAGCTGAATACGTGCATTCCCCCGAAGGCGTATCTCTGGGGACGCCCAATGTCGTACAAAGGTCCGAGTATACAAAAAACTGCACAAGCAACACAACATCAAAATCAAATCTCGAGAGCTATTAACCGGCAAAAAATAATCCAGTCGAGTCAATTGGTAGCTGTGTCGAACAGTAATAAATTCAAAGTGGTGCCACACTGTATTGTGGCGTTCCCGCTGGATCATAACAAAAAAAAACGAAAAAGATCGA | |||||||||
gi|164312135|gb|EV488068.1|EV488068 132F02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence GATTGAGCCGCGCCAATAT EST sequence (targeted fragment marked with yellow): TATCTTTTGTACCACCACGCCGAATAGATCAATTCCGGTACAAGTGGACCGAATTATAAAGTGCCGAAAGTTCAGTTATCGAGTTCGGGACCGGAGCATTATCTCCGGCGTCAACAATTGCTTCAACAAAGGCCAACCACGCCGAAGATAGTGACTGATGAAATGGCGAACCAACAGCTTCAGCAGGCAATAATAGACCAATTAATTCAGGCCGCAGAGCTGATCGAAACCGGTGATCCGGTACTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCTGTAGGTAAGCCCTTTATAAGGGCTGCTTTCTACTTTAAGGAGGCCTTACAATTACTCCTTCGTTTCAACACTACCAACACTTCAACTTTGTATACTACCAATATGATTTTCAAGATCGCTGCTTACAAATCGTTCTCTGAGATATCTCCGACCGTTCAATTCATGAATTTCACTTGTAATCAAGCAATTCTCGAGGTTTTCGAAGGGTGTAATCGAGTTCACATAATCGATTTTGATATCGGATATGGTGGACAATGGGCTTCTTTGATGCAAGAACTTGTATTAAGAAATGGA | |||||||||
gi|78349823|gb|DT570097.1|DT570097 EST1080737 GH_TMO Gossypium hirsutum cDNA, mRNA sequence GATTGAGCCGCGCCAATAT EST sequence (targeted fragment marked with yellow): TGGTGACGCAGGTGACCATTCCTTTGGCATCAAACAGCTGCTCCAGAGTGGGAGTACTGGTCCTAATCAGGGTCATGATTTTGATGGCAATGCAGGGTCGTGGGTTGTTGACCCAAGTCCAGGGTTTGAACCAATTGGTAGCCTTGCTACTTCCGGTAATGTGTTATCAAGCGCTGCTCCTATTTTGGGTGGTTTTCCTGATTCTGGGTTTGTGCCAAATCCCAACAATAATGATAATGGGAAGGTTGGTGTAGCGACGCCAAGTTGTTCTTCAGTTGAGGGGGTTAATAATCACAAGGTTCTTGGTGCTACTGTTGGGTTGGATATTAGTATTCAAGATATAATATCTGCTTCTCCAGATAACAGTATTGGTCTTCCTGTTACTTTGCCTACGCTTTATCAACAGCAGCAGCAGGACCTTGAGAAGCCTCAGATTTTGATGGGCCGGCAACGGCATCAACAGCGTCCTCAAAATCCAAACTTTTCCTTTCCATTACCTCAAGAACAGGACCTCCTTGAGCCCTTGCCAAAGCGTCTCAATGCGGGTAACTTGGAATTTTCTTCTCAGATCCCAAAACTCGCCGGGCATGAGTTGTTTATCAGAAAGCAGCTGCAACAGCATATGGTGGCAGAAGAGGAAGTGTTGGAACTGCTTCACAAGGCTGCAGAGTTGGTAGGGACTGGGAATTTTGCACACGCGCGCGGGATATTGGCGCGGCTCAATCACCAACTATCTCCGGTTGGTAAGCCCTTTCAAAGGGCTGCTTTCTACATCAGGAAGGCTTTACAATTACTTATCACGAATAACTCAGTCTCTCCCCACCTCCGAAAAGCCCCACCCGTTTTGACGTTATCTTCAAACTGTTAGCTTACAAGTCTCTCTGAGTCTCTCGTTTATCCAATTTGTAATTTACTCACCAGGCTCTGCTGAGCTCTTGATGATGCTGACG | |||||||||
gi|164258557|gb|ES822840.1|ES822840 UFL_246_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence GATTGAGCCGCGCCAATAT EST sequence (targeted fragment marked with yellow): GGCACGAGGATATTGGCGCGGCTCAATCACCAGGTCTCCCCTGGTAGGTATGCCCCTCCAAAGGGCTGCTTTCTACTTCAAGGGAGGCTTTACAAGTACTCCTCCTCATGAATAACCCAGTCTCTCCCCCGCCTCCAAGGAGCCCCACCGCTTTCGATGTTATCTTCAAAATGGGGGCTTACAAGGTCTTCTCTGAAGTTTCTCCGCTCATCCAATTCGTTAATTTTACTTGCAATCAGGCTATCCTTGAAGCTCTTGATGATACTGATCGGATTCACATTGTGGACTTTGATATTGGTTTTGGTGCTCAATGGGCTTCCTTTATGCAGGAGCTTCCCATGAGGAGTAGAGGAGCTCCCTCATTGAGAATTACTGCCTTTGCCTCCCCTTCAACGCACCATTCTATTGAGCTTGGGCTTATGCGTGATATTCTTATGCAATTTGCTAATGAAATTGGTCTAAGTTTTGAGCTTGAGGTGGTTAATTTCGATTCTTTAGATCAGAACCCTCATTCTTTGCCAATGTTTCAATCAAATGGAAATGAGGCAATTGCTGTGAATTTCCCTCGTTGGTCTTGTTCGAATCGGCCCTCTGCTTTGCCCCATCTTATGCGCTTTGTGAAGCAGCTTTCACCATAAATTGTGGTGTCTTTAGACCAAGGGTGTGATAGAAATGATCTGACATTCCCACAACATGTGATCCATGCCTTCCAGTCATATACAAACCTATTAGAATCACTTGATGCTGTTAATGCGACATCTGATGCTGTGAACAAGAATGAGAGGTTCTTTTTGTACCAGAAATGAAACAGCGTGCTGGG | |||||||||
gi|164347837|gb|ES822760.1|ES822760 UFL_427_24 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence GATTGAGCCGCGCCAATAT EST sequence (targeted fragment marked with yellow): GGCACGAGGTCAGATCCCAAAGCTACCATTCTCAGACCATGAGTTGTTTATCAAAAAACAACAGCTTGTTGGGTTTCAAGAACAGAAGCCATTAATGGTGTCTCAACAACAACAAGCAGCCACATTGTTGGACCAGCTTTGTAAAGTAGCAGAGATGGTAGAGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACTTGTCTCCAGTAGGCAAAACATTTCAACGGATTGGTTTTTACTTCAAGGAGGCATTACAATTACTACTCTTCATGTATAACAATACCCCAGTCTCGAAAAATCCGACACCTTTTGATGTTATCTTCAAAATGGGAGCTTACAAGGTCTTTTCCGAGGTTTCGCCGTTCGTTCAGTTTGTTAACTTTACGAGTAACCAAGCTTTCCTTGAAGCACTCGAGGATTCCGACCGAATCCACATTGTGGATTTCGATATTGGTTTTGGTGCTCAATGGGCTTCTTTTATGCAGGAACTTCCTATGAGGAGTAAAGGAGTTGTTCCTTCATTGAGAATTACAGCTTTTGTTTCCCTTTCGACATACCATCCTATCGAACTCAGTCTTATAAGGGAAATCTTGAACAATCGCTAATGAATCGGTGTAATTTTCGAGCTTGAGGTACTTAACTTTGATTCTTTAGATCAAAACCCTTATTCATGCCTATGTTTCAAATGAATGAAAAACAAGCGCTTGCTGTGAACTTTCCGTTTGGTCTGGTTCGTATCAACCTTCCATTTTGCTAATCTGTTACGATTGGGAACAACCTAAAACCGAAAATGGGGTGTCCTTTAAACCAAGGGGGGGAAAGGAATGAAATTGGCCTTCCCCAAACTAAAAACCAAGCGTTTTTATTTCCATAAAAAACCTGTTGGAAAACCCCTGAATGCCCCCCTTAAACTAAAATTCCAAACCCCTAAAAAAAAAACAAAAAGGTTCCCTTTATTGGGCCCAAAAATTTAAAACCCCCATTTTTTGGGGCCCTTTTTGGATTTCCCCTCCAAAAAAAATAGCCCCCCCCGGGGAAAATTTCTTCTTTTTTGGTTTTTCCGGGGGGTTTCCCCCCCCTTTTTATAAAGTTTACAAAAAAATTTTCCCCCCAAAAAAACAAAAAACCGGGAAAAATGGGGGCTCCGGGGAAAAAGAGGGGGCTTCAAGGGGGTTTTCGAAGGGGTTTTTTTTTCAAAAATATCCCCAAAAA | |||||||||
gi|164314275|gb|ES842963.1|ES842963 UFL_093_77 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence GATTGAGCCGCGCCAATAT EST sequence (targeted fragment marked with yellow): TCGAAGCTTCCTTTTCCGTTTTAGATCTCAAAATTCAAAAGGCTCTCTTTTTCATCTCATGGCTGCTACTATTGTCTCCGTCAAAGCTAGGCAGATCTTCGACAGCCGTGGAAATCCTACGGTTGAGGTTGATGTGGAAATATCGAACGGTATAAAGGCTAGGGCCGCAGTTCCTAGCGGTGCATCCACTGGAATTTACGAGGCTCTTGAGTTGAGAGATGGAGGTTCCGATTACCTCGGTAAAGGTGTATCGAAGGCTGTTGCTAATGTTAACACAATCATCGGCCCTGCATTGATTGGAAAGGACCCAACCGAGCAGACTGCAATTGACAATTTCATGGTTCAACAACTGGATGGAACCCAAAATGAGTGGGGTTGGTGCAAACAAAAGCTCGGTGCAAATGCCATTCTTGCCGTGTCCCTTGCTGTTTGCAAAGCTGGAGCTGAAGTCAAGAAACTTCCCCTTTACAAGCACATTGCTAACCTTGCTGGTAACAGCAAGTTGGTTCTTCCTGTCCCTGCTTTCAATGTCATCAACGGTGGTTCACATGCAGGAAACAAATTGGCTATGCAGGAGTTCATGATTCTTCCTGTAGGAGCATCATCCTTTAAGGAGGCCATGAAAATGGGTGTTGAAGTCTATCACCATTTGAAGTCTGTGATTAAGAAGAAGTATGGTCAAGATGCAACCAATGTCGGTGATGAAGGTGGCTTTGCTCCCTAATATCCAGGAGAACAAGGAAAGACTTGAATTTGTGAATACAGCCATTGCTAAAGCTGGTTACACTGGCAAAAGTTGTTATTGGAATGGATGTTGCCGCGGCTGAATTT | |||||||||