| mature miRNA: GATTGCCAGATGGGATCTCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73868538|gb|DT471276.1|DT471276 WS01213.BR_D18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01213_D18 5', mRNA sequence GATTGCCAGATGGGATCTCA EST sequence (targeted fragment marked with yellow): AACAACTACTTCATGCCTAGCAATTATACAACAAGCCGATTATACACCCCTGATCAATATGCCAAGGTTTTAATTGACCAGTATAGTCAGCAAATAAAGCTTCTGTACCACCTAGGAGCCAGGAAAATTGCCTTGCCTGGACTTCGACCAATAGGCAGCATTCCATACTCATTTTCTACTCTATGCCGCAACAATGTCTCTTGTGTGACCAATATAAACAACGCAGTCCTCCCTTTTAACGCAGGACTTGTATCACTTGTTGATCAACTGAATAGAGAGTTGAATGACGCACGCTTTATATACCTGAATTCTTACTGGGATGGCATCTGGCGATCCTTCTGTGCTCGGGTTTAGGGTTACAAACGTTGGATGTTGTCCAGCACGTAGTGATGGCCAATGCATTCAAGACCCATGCCAAAATAGGACTGAATANTGCGTTTTGGGATGCAATTCATCCTACCGAAGCTTTGAACCAATTCACTGCAAGAAGATCGTACAATGCCATTCTTCCATCTGATGCTTATCCAACCGATATCAGTCATTTAATCAGTTAACATGCAGATCTAAGTCAAGGAAGATAATATTCCATAAATAATATAATAAATAATTTA | |||||||||
gi|38576090|gb|CK091765.1|CK091765 F124P43.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F124P43 3', mRNA seque GATTGCCAGATGGGATCTCA EST sequence (targeted fragment marked with yellow): CGAGATATGATCACAAACAATATCATCAGAATTCGACTAGATCTCAACTGGTAACAGTGTCTTAAGTCTAACATTGGTATTCTTAAGGTCAGCAGCCGCCTTGTCCACCTTAGTGTCAATTTCATCCATCAAAGGAACTTGTCTGTCAATCTCCTCATTCATGTCATGAGCCATATTCTTCAGCGTGTCCAAACCATCTGAAATCATATCCAACCCTTGATCCTGCTTCATTTTACGCATTTCATACTCCTGCCTGAATTGACTAGACGTCTCAGTTTCTTGAAAGTATTCATTATCAAACTGCCCATCTGAATCAAATTTGATTTCAGCACGGGGAGCTGAAGTCCCCCAACCTCCAGTTTGTTTGGGCGCAGCTGCAGTTCCATCTGGTATAGCTTGAATCCTATCTGGCAATGCAAGGACCAAATCATTTCGTGCAGCAAGTTCTTCTGTAGAAAGTCCTTTAACCTTCTTTACAGCTAATCTCTGCAGTTTAGGGACTTCCTCAAGCAATCTAGCCTTAGTTCTACGAAGCTCTGCGTTTATAGCAACAGCAGAGGCCTTACTTTTCTCCTTGGAAGCAAGCTCGGCTTTCTGGAGAGCCGCTTCAATGTCAGAATCAATGGCGGCGTAGAGGCGAGCAAAGGCATCGTCGCCGGAGACATTGAGATCTTTTTGCTTTTCAATGTCGTATTTGTCGTATTTGTTGCAGATCGCGTCTA | |||||||||
gi|73874875|gb|DT477613.1|DT477613 WS02520.BR_H11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_H11 5', mRNA sequence GATTGCCAGATGGGATCTCA EST sequence (targeted fragment marked with yellow): GCAGCAAATGAGTACCCAGAATTTCAGTATGGGACCTACCCATTCGCGATCTTTATCGCAGCCATCATCGTTTTTCTGCCTTGATTCCTTGCCACCGTTGAGTCCGGCCCCTTTTCGTGACTCCTCTTCGCCAACGGTTTCGGACCCTATTTCAACTGATGTGTCCATGGAGGATAAGGATGGTAGCTCTCATTCGTTGTTGCCACCCTCCCCTTTTAATAGGGGCAATGCTCCACGTGTTGGTGAGAGTTTACCTCCACGGAAAGCCCATAGAAGGTCTAACAGTGATATTCCATTTGGTAATGTGTTGCAATGTTCACCTCCCCTTATTCCGTTGAGGGGTTCAGGTGGCTTGGAGCGGTCGTTGTCCGGTAAAAAAAGAATGGGAGAGAGGTGGTGAAAGCATTGCGGAGGGGACGGGTGAGAGGAAATCTGAAGGGGATGTGGATGATTTGTTTTCTGCTTATATGAATTTAGATAACATTGATGCGTTGAACTCTTCGGGTACTGATGAGAAGAATGGTAATGAGAATCGTGAGGATTTGGATAGTAGAGCTAGTGGAACTAAGACAAATGGTGGTGATAGCAGTGATAATGAGGCAGAAAGCAGCGTTAATGAAAGTGGTGGCAGCGTGCCAAGAGGAGGATTTAGTTCTTCAACAGAGAAGAGGGAGGGGATCAAAAGGAGTGCTGGAGGTGATATCGCTCCTACCTCCAGGCACTACAGAAGTGTGTCAATGGATAGTTTCATGGGCAAATTGAACTTTGGTGACGAGTCTCCAAAATTGCCACCTTCACCAGGAACTCGTCCAGGTCAACTTTCACC | |||||||||
gi|24066873|gb|BU875349.1|BU875349 V005G11 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GATTGCCAGATGGGATCTCA EST sequence (targeted fragment marked with yellow): AATTAATTCTCCTGCATTTTCTTACATTCCTTGCTAGCCCCGACCTTGTCAGCCTAAAAATATGGCTTCTGACGGAAACAAGAACAAACCTCTCGATCGTGAAGTTAGAGACATGGTGAATACCATGACACACCGCATTGTTGATCAATTTCACAAGCCAAGTGCAAGTCTTCACAACCAGGAAAGCGCGGCTGATGAGGATGGTCATGGCATTAGAATCGCCACTCTTGCTGGAACCAACACAGGAGCTACAACGCGAAGCGAGTTGGATGATCAGAAATCCAACAAGTTGCCTGATGGGGTGTCATTTGGCGATCCTGACGCATCACGGACTTACGTTAATAGCAATTTCCAAGCTGTTAACAATTCTATCATGTTTGGTAGCAACCTACAGCCACTAATGATCCTGGCGTTCATATGGA | |||||||||
gi|52395182|gb|CV236017.1|CV236017 WS01222.B21_H24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01222_H24 3', mRNA sequence GATTGCCAGATGGGATCTCA EST sequence (targeted fragment marked with yellow): ATATAAACAAAGCAGTCCTCCTTTTAACGCAGGACTTGTATCACTTGTTGATCAACTGAATAGAGAGTTGAATGACGCACGCTTTATATACCTGAATTCTACTGGGATGTCATCTGGCGATCCTTCTGTGCTCGGGTTTAGGGTTACAAACGTTGGATGTTGTCCAGCACGTAGTGATGGCCAATGCATTCAAGACCCATGCCAAAATAGGACTGAATATGCGTTTTGGGATGCAATTCATCCTTCCGAAGCTTTGAACCAATTCACTGCAAGAAGATCGTACAATGCCATTCTTCCATCTGATGCTTATCCAACCGATATCAGTCATTTAATCAGTTAACATGCAGATCTAAGTCAAGGAAGATAATATTCCATAAATAATTTAATAAATAATTTATAGAAAATAAGGTGGTCTTGGTCACTTTGTTACGATGATAAAATTATGCAAAACAGCAGTCTAATAATATGACTTCTTGTAAACGAAAAAAAAAAAAAAAA | |||||||||
gi|52396291|gb|CV236571.1|CV236571 WS01224.B21.1_J17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_J17 3', mRNA sequence GATTGCCAGATGGGATCTCA EST sequence (targeted fragment marked with yellow): GGGCAGCAGGGATTCGTGATGAGAGTGGAAGGCAACTGGGTGATAGAATCAGCCTAAATGAGCAATTGCTGAATCATGTTACTACATTGAGTCGCTTGATTCAATTACTAGGGACTAAGCAGGCAGCAGAAAATTACCTTAATAAGTGCTTGTATTATGTCAGCTTGGGCAGTAATGACTACTTAAACAACTACTTCATGCCTAGCAATTATACAACAAGCCGATTATACACCCCTGATCAATATGCCAAGGTTTTAATTGACCAGTATAGTCAGCAAATAAAGCTTCTGTACCTCCTAGGAGCCAGGAAAATTGCCTTGCCTGGACTTGGACCAATAGGCAGCATTCCTTACTCATTTTCTACTCTATGCCGCAACAATATCTCTTGTGTGACCAATATAAACAACGCCGTCCTCCCTTTTAACTCAGGACTCGTATCACTTGTTGATCAACTGAATAGAGAGTTGAATGACGCACGCTTTATATACTTGAATTCTACTGGGATGTCATCTGGCGATCCTTCTGTGCTCGGGTTTAGGGTTGTAAACGTTGGATGTTGTCCAGCACGTGGTGATGGCCAATGCATTCAAGACTCAACCCCATGCCAAAATAGGACTGAATATGTGTTTTGGGATGCAATTCATCCTACCGAAGCTTTGAACCAATTCACTGCAAGAAGATCGTACAATGCCTTTCTTCCATCTGATGCTTATCCAACCGATATCAGTCATTTAATCAGTTAACATGCAGATCTAAGTCAAGGAAGATAATATTCCATAAATAATTTATAGAAATAATGTGGTCTTGGTCACTTTGTTACGATGATAAAATTATGTAAAACAGCAGTCTAATAATACGACTTCTTGACATAAAAAAAAAAAAAAAA | |||||||||
gi|73893631|gb|DT496369.1|DT496369 WS01123.BR_D09 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01123_D09 5', mRNA sequence GATTGCCAGATGGGATCTCA EST sequence (targeted fragment marked with yellow): GAACTTCAATTAATTCTCCTGCATTTTCTTACATTCCTTGCTAGCCCCGACCTTGTCAGCCTCAAAAATCATGGCTTCTGACGGAAACAAGAACAAACCTCTCGATCGTGAAGTTAGAGACATGGTGAATACCATGACACACCGCATTGTTGATCAATTTCACAAGCCAAGTGCAAGTCTCCACAACCAGGAAAGCGTGGCTGATGAGGATGGTCATGGCATTAGAATCGTTACTCTTGCTGGAACCAACACAGGAGCTACAATGCGAAGCGAGTTGGATGATCAGAAATCCAACAAGTTGCCTGATGGGGTGTCATTTGGCGATCCTGATGCATCAGGGACTTACGTTAATAGCAATTTCCAAGCTGTTAACAATTCTATCATGTTTGGTAGCAACTACAGCACTAATGATCCTGGTGTTCATATGGACATTTCGGATACTTATGAACACCGTGGACTTCGGCCTGATAAGCATGGAAAGAAGGGAAAGAAGAAAGACGAGGAAGCTTTCGAAAGTGACCAACATTCTGAACATTCAGATTGAGGTCACTGAAGAAGAAAATTGAAGCAGGAGGTTCAAAAGGAATGAAGCTGTGCTTTAGTAATGCTCTATATACAACAGGTTTAAGTTTGCCTGTTAAAGATTACTACAGGTTTGGTTTTCAGAATTTATAATGATCAGACAATAAAGTTCCAAAAATTAAAAAAAAAAAAAAAA | |||||||||
gi|52380835|gb|CV228903.1|CV228903 WS01911.B21_J12 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01911_J12 3', mRNA sequence GATTGCCAGATGGGATCTCA EST sequence (targeted fragment marked with yellow): ATTTTTCCCTGGCTATTACAAGGCCACGTGATGGAAACCCCCCGTGGCACGTGGGGCTCGATGCCTGCGCTAATCGCATACTGCCATGTGGTGATATCCATCTGGCAATCCACTTGAATTGACTGCTGACCTCGTGATCATCGGCGAACATGACAGGAGCAGCAAGCAGCAGGGGTCGGTCTTGAAGAAGTGACTGAGAGGCATGCGCACCCATTTTAATGGAAAGTTTCCATGTACAGCTCCGTAAACACGACGATGACTTTGAAGAGATGATAGGATCTAATCCATAATCCGGCATGGGAGGCGGATCAACTCTTCACGGAGAAAGGTAAGACTGACGTGATTTTGCTCAACAGATGGAGATTTTGGAGTGCCTACAAAATTGCTGGAAAGAAACCCATTTTTTTCATTCAAGGTTGGTATGGCGAGATCGAATGACCTCAGGGCTCTGTCCTAAAGCCTCACCTAACTTGTAAACAACCATCTCAAAGAACACAAACAAGGCCCCCTCAAAAACACTTCCCATAGGCATTAAAGGCCTAGATTTCTCCTCCCCGCCATCGCCATCACCCTTATCATCAGCCATGGTCTGTGCTGGCACATAGCAAACCACACTAGCATGCTTCACACAGGATCCTGTCTCAGGCTGAGCCGTCAACAACAACACTGTAG | |||||||||