| mature miRNA: GCACCAACATTATTGGAATGA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73880152|gb|DT482890.1|DT482890 WS02521.B21_B02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_B02 3', mRNA sequence GCACCAACATTATTGGAATGA EST sequence (targeted fragment marked with yellow): TAAGAGTGGATGTGTCACAAATGCCAAGAAAACGATTCACAAAGGTCGCATCGTTGGGTCATTCTTGATTGGAACTAAGAAGTTGTACGATTTCGTTGATAATAATCCATTCATTGAGATGTTGGACATTGCCTATGTCAATAATGTTGGTGTCATTGCGAAAAATCCAAAAATGACTGCCATTAATTCAGCCATTGAAGTTGATCTAACTGGTCAAGTATGTTCTGATTCGATTGGGACCCGAATGTATTCAGGTTTCGGTGGACAAGTTGATTTCATTCGCGGTGCAGCCGAAGGATTCGATGGCAAGGGAAAACCAATAATCGCATTACCGGCAGTTACAAAACGCAATGAATCAAAAATTATTCCGACAATCAAATCAGGCGGTGGTGTCGTGACGACTCGGGCTCATGTTCATTATGTAGTCACAGAGTTTGGTATCGCATATTTGTTCGGAAAGACCTTACGTCAGCGGGCTCATGCTTTGATTCAAATTGCCCATCCCGATCATCGGGAAACATTGGAAAAAGCTGCTTTTGAAAGACTAAAATGTATGCCATCGGCATAAGAATATGTTATTATTAATGTGTACAAACACTTTCGGTATTTTTTACAAGTACGATTGGGATCATTTCGTTTTAAGAATTTTCTTCTTCAACAACAAAGGTGCGATTTCGTCATAAATCTCTTTATTAAAATTTTCGATGTTATAATTTTCATTAAAAGAATCTATTCAATGTTTATTCTTTGAATGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|3857593|gb|AI166308.1|AI166308 xylem.est.153 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence GCACCAACATTATTGGAATGA EST sequence (targeted fragment marked with yellow): AATGCTTAGGCAGATTATGAAAATGGATGCTTCTTCTAAGTTGGAATCTTATGACAATAATCTTGGTGCAAAAGACAGTGGAAGCTCTTCGAGCCACACATCAGGAGTGACTCTTCAAGAGGTTCTGCCAACTTCAGGGCAATACGCTCATATACCAGCAGCTTTTGGGATTTCCAGGCAGGGCCCATCGGCTCCAATATCTGAAATACAATCTTCCCTGCAAATTGCTAGTTCTGAAAAGGTTACAGCCTCTCAGTTTCCGGATATAAGTATGCCGGTTGGAGCACAGGGGGCAACCTCCATACCTATTCCTCAGGCAGATGTGATCATGCCCCATGTTTCTCAAATGCTTGAAATGGTACCAGAAAATGTTGCTGATATCCCTTGTGAAGATTACATGGAACCAGAGACATGCAATGATGGATTCATAGATCTAGCTTCATTAGGAATTAATGGAATACCCATAGATATTGATAACATTTCCCCTGATCCTGATATTGATGCTTTGCTTGATAATTCTAGCTTCTGGGATGACCTTCTTGTGCAGAGTCCAGAGCATGAGGATATTGAATCAAGTTCTGTAGAGGGTAAAGCCAATGGAAATGATGTGCAGCCAAATGCAAACGGGTGGGAC | |||||||||