| mature miRNA: GCAGCAAATCCGTTTTCGCTG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73888880|gb|DT491618.1|DT491618 WS02548.C21_E09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_E09 3', mRNA sequence GCAGCAAATCCGTTTTCGCTG EST sequence (targeted fragment marked with yellow): GACAGCATGAGAATTGGTTCTCACAGTTCTTCAGATCTGCTGCTTCCATTGAGGTCCTATCCTCTGTTTTTGCAAATTGCAAAGACTTACGAGTTCTGACAAGCTTCCATTTCTTTAAAGTTTTCTTGAATATTAAAGGAAAAACTGCTGAGAAGGGTCTTCACTTTTTTATTCGAGCAACTGTTGTCTGCAAAAACGGGTTTGTTGTAATTCTTAGTTCAATATAATTTGAACACTTACGGTAAGAATCTCAGGTCTCAAACTCAACCAAGTGGAATTTTATCTCATGTAGTTTTTGTAAGATTTGATTGGTTGTGGTCAGAGCAGAGAGTATTATATTGGGTTCAGGTGCTTGAAACATCATCCTACTCGAGTTATTTTTTCTTGTTTCTGGATGCAGGGCTGCAGGTTTTACAGTTAAGAAGAGGGCTGCAAATGGAGGCTTTGCTAGAAAGTCACCCCCACGCCAGAACCAACAACAGCATCAAGGGGATGTGGGTGCCAAGCAGAGGCCTCAAACATTGGATTTATTGTTTGCTAACATGAAGGAGCAGAGGATGAAAGTCTTGTCACGGCAAAACAATGCTATAAAATACAACGGCGGTGGCAGGCGGCCAAGGGTGCCATGGGCAAGAGGCCGATTCTGATGCGAGCTCTTGCAAGAGGTTGATCAGACGGGGTGTTTGCGACTCTGAAGCAGAGTCTTCTATGATCATGTCTTCTCAGCCTCCCTACTGACCCTGTTCATTGGAGTGCTAAGGGTGCTTCAGTTGCAGAACCTAGGCCTCCCTAAAAATTTTCATTTTTGCTTGTCATGTTGAACTATATCCAGCTTGGTATTTTCCCAGTGGCATTGTATCAGTTACAGGATGTTAATGCAAAA | |||||||||
gi|60694527|gb|DN485143.1|DN485143 M112F05.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M112F05 3', mR GCAGCAAATCCGTTTTCGCTG EST sequence (targeted fragment marked with yellow): GCACCCGAACATCGGCTCCCAGTGGCCGTCGAGAATCCTTATGCTGCGTTGCTCTGGCTCCGTGCCAATGCTCGCGGCGAATTATCTGATCAATGGCTCACGAGCTATGCTGATTTTAATCGAGTGTTTCTGGTCGGGGATAGCTCCGGTGGGAATTTAGTGCATCAAGTAGCAGCTCAAGCAGGGTTCGATGATATTGAGCCTTTAAAGCTAAGAGGCGTATAGCCATACAACCTGGCTTCATATCGGACAAGCCGAGTAAGTCATATTTGGAAATACCTGAAAATCCATTATCAACAAGAGAAATGATGAAAAAGTTCACGTCATTGGCCGTGCCTATTGGTAGCACTGGGGAGCACCCAATTGTGTGGCCAATAGGTCCTCAAGCACCACCACTAACCACTCTGAAACTTCCACCTATGCTCGTTGTGGTGGCGGAGATGGATTTGCTTCGAGACTATGAATTGGAATATTGCGAGGAGATGAAGAAAGCTGGCAAAGAAGTAGAGGTTTTTATGAATTATGGAATGAGTCACAGCTTCCAGTTTAATAAGCTTGCCATTGACATGGATCCAGAGATAGCTACCCAAACTAATAAGATGATTGAGGTGATTGTAAGTTTTATCAATAGGAGCAGCTGAGGGTATTGATCATGATGTTTTCGCTTCTAATTTCATTGCTATAGGCCATTTTGCCATGTTACTTGTTGCAAAAATGCCAGCAACTCCATCT | |||||||||
gi|73880622|gb|DT483360.1|DT483360 WS02522.B21_G01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_G01 3', mRNA sequence GCAGCAAATCCGTTTTCG-CTG EST sequence (targeted fragment marked with yellow): ATGATTTATTCCGGTGTTGTTGCTGGAGCTAGAGAAGCATTATTTTGTGGTGTCCCATCCCTGTCAATATCACTGAATTGAAGNAAGGAAGAAAGCCAAGAAAGTGATTTTAAGGATGCAGTTGCTGTCTGTTTGCCAGTGATAAATGCTGCTATCAGAGATATTGAAAAGGGGTTTTTTCCAAAGAGCTGCTCTCTGAATATTGAAATCCCCACATCTCCATCTGCAAACAAGGGCTTCAAACTAACTAAGAGAAGTATGTGGAGATCCTCACCTAGCTGGCAAGCTGTTTCAGCTAATCGGCATCCTTCGGCTGGACATTTCATGTCTAATCAACAAAGTCTTGGCCTCCAGCTTGCACAGCTTAGTAGAGATGCCTCTGCTGCTGGTGCAGCTCGCCGTTTGACCACACAAAGGAAGAACATGTTAGAGATTGAATCAGTTGGGGCCGGTGGAAAATCTGATAGCAATCGGGTGAAGAAGTATTTTCGAATGGAGTTTTTGGACAAGGAGCTGGAGGATACAGATGAGGATCTGGATTTCAGAGCAGTTGAAAATGGATTTGTTGCGATAACTCCACTATCACTTTCTCCACGTATTGAAGAGGACACTCACATAGCAGCCTCAGATTGGATCTCTTCCGCGCTTCATGGGGACCAATAAAAGCCGCCTCAATTATATAATCAATTATTTTGTATACTCTTGCAGGCACGATTGTGTTAATTAGTAATCAGTTGCATTTGTGTATTTTCTTTTTTCTGCATTTACCCCTTTTGATTTTCTTCTTATATTTGGTGGGGTTGGGTGGGTTTGCATTTTGTAGTTTTTAATACAAATGTAATTTAAAATGGTCAGGTCGTAATTACATGACCTTGTCTTTTCAATCAATTGTGACTTCCAGATTAAAAAAAAAAAAAAAAAA | |||||||||