| mature miRNA: GCAGCAGGTTTTGCATGCTCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38585985|gb|CK101660.1|CK101660 F106P92.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F106P92 5', mRNA seque GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): CGGCACGAGCATCTCCTAGCCAAAAAAACTTTCACTCTCTTTTCCAGGAATTCCAAATGGCTCCCAAGGCCGCAGAGAAGAAGCCGGCTGAGAAAAAGCCAGCGGCGGCAGAGAAAGCCCCAGCGGAGAAGAAGCCAAGGGCAGAGAAGAAGATACCCAAAGAAGGAGCGATTGACAAGAAGAAGAAGAGGTCAAAGAAGAACGTCGAGACCTACAAGATCTATATCTTTAAGGTCCTGAAACAGGTCCATCCTGACATTGGGATCTCAAGCAAGGCAATGGGTATCATGAACAGTTTTATCAACGATATCTTTGAGAAACTCGCTCAAGAGTCATCGAGGCTTGCAAGGTACAACAAGAAGCCTACCATTACTTCTCGGGAGATCCAGACAGCTGTCAGACTTGGTTTTTGCCTGGAGAGCTTGCGAAACATGCTGTCTCTGAAGGGACCAAGGCTGTTACCAAAGTTTACCAGTTCGTAGGTGGCCATGTCTAGGGTATATGAGAATGTTTGGGGGTTTTCTGTATTAGTCTTTCATTTTACATGTAAAGGTTTAGGTTCTGATCTAGTG | |||||||||
gi|73889816|gb|DT492554.1|DT492554 WS02551.C21_C18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02551_C18 3', mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): AAAGGGATAGGGATAGGGAAAGGGAAAGGGAAAGGGAGCGGGAACGGGAACGGGAACGGGAACGCGAACGCTCCTCGCGGCGCAACAGAGAACGCGAACGTGAAGAGGAAGCAAAGGCGCGAAAAAAAGCCAGGCTGGATAAATTAGCGGAGAGAGAGCGAGAGAAGGAGCTGGATGCGATTAAAGAGCAATATCTAGGGTCGAAAAAGCCTAAGAAGAGAGTAATAAAACCTAGTGAGAAGTTTCGCTTCTCTTTTGATTGGGAAAACACGGAAGACACTTCTAGAGACATGAATATTTTGTATCAAAACCCTCATGAGGCACAACTTTTGTTCGGTCGAGGGTTTAGGGCTGGAATGGACCGGAGAGAGCAGAAAAAACTTGCTGCAAAGAATGAGAAGGATTTTAGAGA | |||||||||
gi|73871256|gb|DT473994.1|DT473994 WS01230.BR_G11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_G11 5', mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): GAGTTTTTATTTAATTAACCTAAGATCCAACGACTTTACAGTTATCTTGTCCTCTAATCCAACCACAGCCGAATTTAAGGGAGCGTGAAGTTTGATTGATTGTTTTGTCGGTCTATTTATTCTACTCGAAGTACAAGATGTTTTTCGATGGATATGGATACCACGGGACATCGTTTGAGCAGACATATCGATGTTACCCTGCTTCATTTATTGAAAAGCCACAAATTGAGAGTGGTGATAAAATTATAATGCCTCCCTCAGCTCTTGACCGTCTTGCATCCCTGCATATCGATTATCCAATGTTGTTTGAGCTTCAGAATGATGCTGCTGAGCGGGTTTCTCACTGTGGAGTTCTGGAGTTTATTGCAGAGGAAGGCATGATTTATATGCCATACTGGATGATGGAGAACCTGCTTCTACAAGAGGGAGATACAGTGCGAGTGAAAAATGTTACTCTTCCAAAGGGAAAATATGTTAAATTGCAGCCTCACACAAAGGACTTTTTGGATATATCCAACCCAAAAGCTATCTTAGAGACAACATTAAGGAATTATTCCTGCTTAACCACCGGGGATAGTATTATGGTGGCCTATAACAACAAGAAATACTACATAGATATCATAGAAACAAAACCTTCAAATGCAATAAGTATCATTGAGACAGACTGTGAAGTGGACTTTGCACCTCCCCTAGATTACAAGGAGCCTGAAAAGCCTGTTGCATCTGTTCCACCAAGCAAGGCAACCTCCCAAGCTGAAGAGGTTCCAGCTG | |||||||||
gi|52501898|gb|CV248923.1|CV248923 WS01122.B21_G13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_G13 3', mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): TCTCTCGTATTACTCTTCACCAACCTTATCACTTCACCAGAGCTAGCCATAAGATGAAGCTACTCTTGATTTTTATCTCCATCCTGCTCATTCAGGCTTTTGTAGGGAATTCATTCCTTAGCAATGCTGCAAATTCTCCAGCTAATATGGATGAAGAAAGCGATGTGGTAGCTATTGATAAGAAACATTATCCTAAAAGAATCAATTGTGGTTATTTATGCGCAAGGAGATGCAGGGCATCGTCAAGAAAGAATGTATGCCACAGAGCATGCAAAACCTGCTGCAACAGATGCCGGTGTGTTCCACCAGGTACCTATGGCAACAAGAGTGCATGCCCATGTTATGCAAGCCTTAGGACCCATGGAAACAAGCCCAAGTGCCCTTAAATTTCATGCAACTATGTAGTTTCTGGAGTGCAGGACATCCAAATGTCTTTTGAATGTTGATTCTACTATTTCCTAGCTGGTTAATCTATGTGTTACCTAATAAGGGGATAAAATCAAGCTATGCTTGAGGATTTTTAAGGCCTCATCGAGAGGAATTTGTTCTGGTTATAAGTAATTATTTTGTCTCCATCTTTATACTCCAGTATGTATTTTGTCAAATTCTGTTCAAAAAAAAAAAAAAAA | |||||||||
gi|24059542|gb|BU868895.1|BU868895 M123E07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): CATTTGCGCATTTGCAGAGTTTGAGGAAACAATTATATGATAAAGAGTAAATTTTTTTACAAGTACAAAGATGATTTAACAGCAGCAACTAATTTGGCATTGAAGGGAGATAAAGAGGAACTTCAACGTCATTGTGCTAACCAAGTGGAGAGAGTTATGGAATTATGGAATAACAATGACGAGTTCCGGAAAGAGTACATGAGTTCCAACATGAGGAATACATTAAGGAGACTGCGGACATTGGATGGTCGTGCACTGGGCCCTGATGAACAGCCACCCATTATTCCAAATGTTGTTAGTCAAAGAGCGACCAAACACAATGTTGCACCATCAGCTCCTGCTCTTGAAGTAGAAAAGCCAGTTACACCTGTGGAGACCCAAAGGATAGATGAAAAATCCACAGCAAAGCTTGGGGACAAAAAGAATCAGACTGTTAAAACTAAAAGGCAGGCAAAACCTGCTTCCTTGGAGAATGGTTTGCCAACTGTTTCTGGAAGAGATCAGATTGAAGAATCAAGACAAGAGGAGAATAAGCTTCCGAAGGAGGAAGAATCAAGGCAAGAGAATAAGCTTACGAAGGAGGAAGAATCAAGGCAAGAGAATAAGCTTACA | |||||||||
gi|24068254|gb|BU876730.1|BU876730 V024F03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): TGGTTTTGCCTGGAGAGCTTGCGAAACATGCTGTCTCTGAAGGGACCAAGGCTGTTACCAAGTTTACCAGTTCGTAGGTGGCCATGTCTAGGGTATATGAGAATGTTTTGGGGGTTTTTCTGTATTAGTCTTTCATTTTACATGTAAAGGTTTAGGTTCTGATCTTAGTGGAAATCAGAAGGGGCCCCGTCGAAACAATGAAGCTTTAATTGCCGGCTTAAATGTTCTTAGTGGAAATAATATTTCAA | |||||||||
gi|24060386|gb|BU869289.1|BU869289 M128D06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): AAATACTACATAGATATCATAGAAACAAAGCCTTCAAATGCAATAAGTATCATTGAGACAGACTGTGAAGTGGACTTTGCACCTCCCCTAGATTACGAGGAGCCTGAAAAGCCTGTTGCATCTGTTCCACCAAGCAAGGCAACCTCCCAAGCTGAAGAGGTTCCAGCTGAGACCGAACCAAAATTTAATCCCTTTACAGGAGCAGGAAGACGCTTGGATGGGAAACCTTTGAGCTATCAGCCCCCACCAGCATCGTCTTCATCAGTGTCTAAAGACAAGCAACCTGCTGTCGCCGATGGCAGTAGGCAGCCATCTCTGGGGTCTAGCTCACAAAATACTGCACGCAAGTCTCAGGGAAAGCTTGTGTTCGGGTCCAATACAGGTCGCACTCCTAAGGAAACACAGAGGGAGGAATCTGGAAAAGAGACCAAGCAAGAGCAGCCTGAAAAGAAAGAAGAGCCAAAATTCCAGGCATTCACTGGGAAGAAGTACTCATTGAAAGGTTGACTGTATCATCCAACAATCGATGCCTCATCTTGGTCATACATTGCCTGTCCTTTCTGGATCAGATAAAAACAATAGGACTATATGTTGATCGGAGATGTTGTATCATCAAATGATGGCTAGTAGGTTCTCA | |||||||||
gi|60704929|gb|DN494739.1|DN494739 M123E07.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M123E07 5', mR GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): TGATATACGACAAGAAGCATTTGCGCATTTGCAGAGTTTGAGGAAACAATTATATGAAAAGAGTAAATTTTTTTACAAGTACAAAGATGATTTAACAGCAGCAACTAATTTGGCATTGAAGGGAGATAAAGAGGAACTTCAACGTCATTGTGCTAACCAAGTGGAGAGAGTTATGGAATTATGGAATAACAATGACGAGTTCCGGAAAGAGTACATGAGTTCCAACATGAGGAATACATTAAGGAGACTGCGGACATTGGATGGTCGTGCACTGAGCCCTGATGAACAGCCACCCATTATTCCAAATGTTGTTAGTCAAAGGAGCGACCAAACACAATGTTGCACCATCAGCTCCTGCTCTTGAAGTAGAAAAGCCAGTTACACCTGTGGAGACCCAAAGGATAGATGAAAAATCCACAGCAAAGCTTGGGGACAAAAAGAATCAGACTGTTAAAACTAAAAGCAGGCAAAACCTGCTTCCTTGGAGAATGGTTTGCCAACTGTTTCTGGAAGAGATCAGATTGAAGAATCAAGACAAGAGGAGAATAAGCTTCCGAAGGAGGAAGAATCAAGGCAAGAGAATAAGCTTACTAACGAGGAAGAATCAAGGCAAGAGAATAAGCTACAAAGGAGGAAGTTGAGTTAGCCCCGAAGATA | |||||||||
gi|73896360|gb|DT499098.1|DT499098 WS0117.BR_E16 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_E16 5', mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): GAAAGAAACTCTCTCAATTTCTTTCTCAAGAATCCCAAATGGCCCCTAAGGCAGAGAAGAAGCCGGCTGAGAAAAAGCCAGCGGCGGCAGAGAAAGCCCCAGCTGAGAAGAAGCCAAGAGCAGAGAAGAAGATACCCAAAGAAGGAGCGATTGACAAGAAGAAGAAGAGGTCAAAGAAGAACGTCGAGACCTACAAGATCTATATCTTTAAGGTCCTGAAACAGGTCCATCCTGACATTGGGATCTCCAGCAAGGCAATGGGTATCATGAACAGTTTTATCAACGATATCTTTGAGAAGCTCGCTCAAGAGTCATCGAGGCTTGCAAGGTACAACAAGAAGCCTACCATTACTTCTCGGGAGATCCAGACAGCTGTCAGACTGGTTTTGCCTGGAGAGCTTGCGAAACATGCTGTCTCTGAAGGGACCAAGGCTGTTACCAAGTTTACAAGCTCTTAGCGGC | |||||||||
gi|73886887|gb|DT489625.1|DT489625 WS02542.B21_L21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_L21 3', mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): GGAAGAGTAGGGAAACCCTGCTGCAATATAGCGGTATATAAAGCCCTCAATTCCCATTCCCTTTCCTCTAGTGCAAAAACCTGTGTCTCTCCTCTCTAAAAACAGTGGCAAGATATATAATTTAGAAGTGAAAGATGGGTATGGTCGTGGTGATCTCTTTGCCTTTGATAATCTTTTGCCTGCTTCTTGGTTTTGGATGTTACTACTTGGGGAGGTACAAGGGAAGACAAGATACCCGTACAAATGCTCAGGTATTTGGAGATCCTATTCCACCACCTGGTTTTGCTAGTACGCCACCTCCTCCACCTCATACCAAGCCAGACAACTTGCACAGTGTTTAGGCTGACTTTTTTTTTTTTGGTTTTGATTTGTTTTCCACTGTCTTATATGGGGGTATAGAGAGTGATGGTTTATGCTGTTGAGATGTATGGTGTGGTTTTTAGCATTATTTCGTGTGTGAATTTTGAGGTGAAAAATTGGCCCAATTGAACTGTGTAATTATACGGGTTGGCTGTTGTATATTGTTTTTCTCTCCTCATTATGGTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|18019410|gb|BI138462.1|BI138462 F106P92Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): CATCTCCTAGCCAAAAAAACTTTCACTCTCTTTTCCAGGAATTCCAAATGGCTCCCAAGGCCGCAGAGAAGAAGCCGGCTGAGAAAAAGCCAGCGGCGGCAGAGAAAGCCCCAGCGGAGAAGAAGCCAAGGGCAGAGAAGAAGATACCCAAAGAAGGAGCGATTGACAAGAAGAAGAAGAGGTCAAAGAAGAACGTCGAGACCTACAAGATCTATATCTTTAAGGTCCTGAAACAGGTCCATCCTGACATTGGGATCTCAAGCAAGGCAATGGGTATCATGAACAGTTTTATCAACGATATCTTTGAGAAACTCGCTCAAGAGTCATCGAGGCTTGCAAGGTACAACAAGAAGCCTACCATTACTTCTCGGGAGATCCAGACAGCTGTCAGACCTGGTTTTGCCTGGAGAGCTTGCGAAACATGCTGTCTCTGAAGGGACCAAGGCTGTTACCAAGTTTACCAGTTCGTAGGTGGCCATGTCTAGGGTATATG | |||||||||
gi|73868209|gb|DT470947.1|DT470947 WS01211.BR_J03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01211_J03 5', mRNA sequence GCAGCAGGTTTTGCATGCTCT EST sequence (targeted fragment marked with yellow): GAGTTCATTCATGACCAACAAAGAAGAGTAGGGAAACCCTGCTGCAATATAGCGGTATATAAAGCCCTCAATTCCCATTCCCTTTCCTCTAGTGCAAAAACCTGTGTCTCTCCTCTCTAAAAACAGTGGCAAGATATATAATTTAGAAGTGAAAGATGGGTATGGTCGTGGTGATCTCTTTGCCTTTGATAATCTTTTGCCTGCTTCTTGGTTTTGGATGTTACTACTTGGGGAGGTACAAGGGAAGACAAGATACCCGTACAAATGCTCAGGTATTTGGAGATCCTATTCCACCACCTGGTTTTGCTAGTACGCCACCTCCTCCACCTCATACCAAGCCAGACAACTTGCACAGTGTTTAGGCTGACTTTTTTTTTTTTGGTTTTGATTTGTTTTCCACTGTCTTATATGGGGGTATAGAGAGTGATGGTTTATGCTGTTGAATGTATGGGTGTGGTTTTTAGCATTATTTCGTGTGTGAATTTTGAGGTGAAAAATTGGCCCAAAAA | |||||||||