| mature miRNA: GCAGCTGCTTGAGCAGCAGCTG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73884896|gb|DT487634.1|DT487634 WS02534.B21_D18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_D18 3', mRNA sequence GCAGCTGCTTGAGCAGCAGCTG EST sequence (targeted fragment marked with yellow): GAATAATTTGAAAGTTTGAAAAAATTCCCATTATGCCAAGCTATACATACACACACGCACAGCACTTCTGACTCCTCCTTCTCACTCTTAGCGGCATAGGAGCTCCAGCAACGCAGCAGCAGCAGATCCAGTGTATCCAGCAGTGGATCGAGCTCCACCAGCAGCAGCAGCGAATCCAGCATCTCCAGCTGCTTGAGCGGCGGCAGGGATGGCTCCAGTTGCTCGAGGAGCGGCGGCTGCTCAAGCAGCTGCAGATCCATTGGATCCAGAAGTGCAAGCAGCTGCAGAAGCGGCAGCTGTGGGAGCTGCTGTGGGAGCCGCAGCTGGAGCGGGAGCAGGAGCGGCTGCGGGAGCTGGAGCGGCGGCTTCGGGAGCTGGAGCGGCGGTTGCTGGAGCAGCGGCTGCGGCTGCTGGAGCAGCGGCTGCGGCTTATGGAGCAGCGGCTGCGGCTGCTGGAGCGGCGGCTGGAGCAGCTGCCGCTGAGTTTTGGGTAATATTATTTATGTTAATAAATTAATATAAAAAAAGAAGATAAAGAGATACATCTTGATTATAACCATCAAAGATTTTAACTGTTCATAAAAAAAAAAAAAAAAAA | |||||||||
gi|73885091|gb|DT487829.1|DT487829 WS02534.B21_M11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_M11 3', mRNA sequence GCAGCTGCTTGAGCAGCAGCTG EST sequence (targeted fragment marked with yellow): GCAGCTGCTGAATGCCTCGCTTCATACATGACGGATGAAGAAATCCAAAACGGCATATTGACCCATCTATTGATAGTATTCGACATATTACAGCAGAGGTTGGGGCTGCTGTTGTGCAAGCAGCTGTTGAAGAAGACCTGGCAGAAGGACATGGTGATGTAGGCCCCCGGGAGCTCAAGCACATGTCAAAAGAGGAGACTGTGGCATATGTCATGCAGAATATGTGGTTCCCTGTTTACAGCTCTCTTGTTCATGAGAAATAAGGCTCGACTCATCTTTTCCGCTGGGGGTAATTTTCTTCAAACCATGTCTGAAATGCTGCATCCAGCCTCGATATTCTTGGTTTATATTTTCCTGTGAACTCGTAATTTGCTAACTTCAGAAACAGAAGAAGGGCAAGTAATGGAAACAGGAACTCAATATTCTTCTATAGCTCATCTGCTTGAGCTTTGAATTGTTAATGTGAAGGATTTATTTATGTATAACACTGAGCACATTTTCTGGAGGCAGTGTTGCAACTGATCAATTTTGCTTCTTTTTCTTTTTTGGGATTTTGTTTCTAAGATCGATTGCAGCGCAGTTTGCTTTTATTGATCTGATCATCAGATGGTGGGCTTGAATTGAACTGAGTTGAAGGGTATGGGATTTTGAAATAAACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73893686|gb|DT496424.1|DT496424 WS01123.BR_F23 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01123_F23 5', mRNA sequence GCAGCTGCTTGAGCAGCAGCTG EST sequence (targeted fragment marked with yellow): TAGCTGTGGCAGCTGCTACTGCTGCTGTTGCTGAAGCTGCACTTGCTGCTGCACAAGCGGCTGCTGAGGTTGTTAGATTGACTAGTGGTGGTTGTGGTGGTGGTGGTGGTGGTAATGTTCTTGGTGGNAGTCACCGCCGGTTTGTGGAGGAAGTGTCGGCGGTTAAAATTCAATCTGCCTTTCGTGGTTATTTGGCAAGGAGGGCACTAAGGGCACTAAAAGCATTGGTGAAGCTTCAAGCGTTAGTGAGAGGCCACATTGTGAGAAAGCAAACAGCAGACATGCTTAGGCGTATGCAAACATTAGTGAGACTGCAGGCTCGAGCCCGTGCTAGTCGCGGTCATGTGTCCGACTCTTGGCATACTACTAGCAAGTCCTCCCATTCTCGATATGCTGTCCCAGCAAGTCCTTCCAAGGATCACCTGTTTCGTGCTTCTAGTACCAAATTTGATGGCCCCTCAATTCTCAAGAGATGTGGTTCAAATGCAAACTTTAGGGAGAGCATTGACTTTGACAAAGTAAAATTGGGTTCAAATTGGCTAGAACGTTGGATGGAAGAAAGTTTATGGAATGACCATGGCAGCAATCCACTGAGAAATCGACATGCTGATGACGAGAGGAGTGACAAGATCCTTGAAGTAGACACTTGGAAGCCCCATGTGAAATCCCAACAAAGTAATCGAACATTTCAGACTTCACAGCATGCTTTGGCTTCAGATCATAACAATCAGATCTT | |||||||||
gi|73871658|gb|DT474396.1|DT474396 WS01231.BR_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01231_M11 5', mRNA sequence GCAGCTGCTTGAGCAGCAGCTG EST sequence (targeted fragment marked with yellow): GCTGAAAGAAAAAAAGTATCTCAAAAAACCCCCCTAATCCCCTAGCCGATTTAACTCGACGCCGTTCAACATGGCCGAAGAAGCCAAAGCCAAAGGCAACGCTGCCTTTTCTACCGGCGATTACACCGCCGCCGTCAAGCACTTCACAAACGCCATTGCTCTTTCTCCAACTAATCACGTCCTCTACTCTAACCGATCGGCGGCTCACGCTTCTCTCCACAACTACGCCGATGCTCTACAAGACGCTAAGAAAACCGTTGAGTTGAAGCCGGACTGGTCCAAAGGCTACTCTCGGCTCGGCGCCGCTCACCTCGGCTTGCACCAAATCCAAGACGCTATCTCTGCCTACAAGAAAGGACTCGAGATTGATCCTAACAATGAAGGATTAAAATCTGGCTTGGCTGATGCTCAAGCAGCTGCCTCCAGAAGCCGTGCAGCGCCACCGCCGAGTCCGTTTGGTGATGCTTTCTCCGGTCCAGAGATGTGGGCGAAGTTAACGGCGGATCCGTCCACGAGAATGTATTTGCAGCAGCCCGATTTTGTTAAGATGATGCAAGAAATTCAGAAAACCCCTAATAATCTGAATCTCTACTTGAAGGATCAGAGAGTGATGCAGGCTTTGGGGGTTTTGTTGAATGTGAAGTTTAGAGAACCGAATGCAGGGGACGATATGGAGATTCCGGAGGGGACGTCCACTCCGCAGCCGCCTGCGCCGGAGAG | |||||||||
gi|73868836|gb|DT471574.1|DT471574 WS01214.BR_F10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01214_F10 5', mRNA sequence GCAGCTGCTTGAGCAGCAGCTG EST sequence (targeted fragment marked with yellow): GAAAGAAAAAAAGTATCTCAAAAAACCCCCCTAATCCCCTAGCCGATTTAACTCGACGCCGTTCAACATGGCCGAAGAAGCCAAAGCCAAAGGCAACGCTGCCTTTTCTACCGGCGATTACACCGCCGCCGTCAAGCACTTCACAAACGCCATTGCTCTTTCTCCAACTAATCACGTCCTCTACTCTAACCGATCGGCGGCTCACGCTTCTCTCCACAACTACGCCGATGCTCTACAAGACGCTAAGAAAACCGTTGAGTTGAAGCCGGACTGGTCCAAAGGCTACTCTCGGCTCGGCGCCGCTCACCTCGGCTTGCACCAAATCCAAGACGCTATCTCTGCCTACAAGAAAGGACTCGAGATTGATCCTAACAATGAAGGATTAAAATCTGGGCTTGGCTGATGCTCAAGCAGCTGCCTCCAGAAGCCGTGCAGCGCACCGCCNGAGTCCGTTTGGTGATGCTTTCTCCGGTCCAGAGATGTGGGCGAAGTTAACGGCGGATCCGTCCACGAGAATGTATTTGCAGCANGCCCGATTTTTGTTAAGATGATGCAAGAAATTCAGAAAACCCCTAATAATCTGAATCTCTACTTGAAGGATC | |||||||||