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mature miRNA: GCATAGCATCATGAGCAATCA
species: Cichorium intybus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|218983780|gb|FL678123.1|FL678123 CIRLL008A01 CiRL Cichorium intybus cDNA 3', mRNA sequence 

GCATAGCATCATGAGCAATCA
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CGTATCGTAGTACTCGTTAGT

EST sequence (targeted fragment marked with yellow):
ACAACGGGGCGGATTATTGGGCACCTCTTAAATGGAGGGTTCCATAACCGCACGAAAGGTTTAGGTTTAACAAATTTCATGGGGCCAGGGTTATGATTTCCCCCCAAGAGGAAGAAGAGCCATCAAGAAATGAGATAACATCATTAGCAGTCACTTGCTCAAAAATATTTCCAAGGCTGATTGCTCATGATGCTATGCATGTTCTTGGTGGTTTACATATGATCTTTGACATAAAAACTTATGGTTGGGGCTTTGGAGCCAAAGTCCCTCCAACTATTAGTAATTTTTATGCACTTGTTATCCTTTCATTTCCACTTCTTTTGTGTAGTATGTATCCATGTAGAATTTCCAAGTATTTGGCATTTAGTATGGTTAATCCAAATAGTTATTT