| mature miRNA: GCCAAGAGAACAAGGTTCCAC species: Populus tremula x Populus tremuloides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60700920|gb|DN490832.1|DN490832 UL91TD09.3pR Populus cold stressed leaves cDNA library Populus tremula x Populus tremuloides GCCAAGAGAACAAGGTTCCAC EST sequence (targeted fragment marked with yellow): GGTATGGATGGGGAAAATGCCTTTTCATTTGGAAAATTGTAATGGTGCTAAACTGTTTTTTTTCGTTTTTTTTTTTCTCTACGCATTGTTTCAAGTCCTCATTACCTGCTGGGAAAAGGATTAACAAATATTGAGGTAGCATTCATCAGATAGTGAATTTGGTTCCCTTGTTTTTTTTAGCTGCTTCTAAAGAATAGTGGTACTTTTCTGTTTTATGGAAATTTTTGCAGGTCCCTTTCAAGGTCAAGATCTCCTCTTGCTTCTCCTCCTCGCAGAAAACATGGCCACAGAACCCCAAGCATAAGCCCCGGTCGTGTTTCCCGTTCGCCTTCTGTGAGGTCTGATCGAAGCCGTTCGGTGGACTCAGATCGTTGATGAGATCTTGTTCTCTTGGTCGTGGAACGTTTCCACTTTCGTAGTGAACTAGACACCTATAAAGCTAGACATGACTCACGTATACA | |||||||||
gi|38584211|gb|CK099886.1|CK099886 A088P10.5pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A08 GCCAAGAGAACAAGGTTCCAC EST sequence (targeted fragment marked with yellow): TGCCACTCAAAAAACTGTTGATGGTCCATCAATGAAGGACTGGAGAGGTGGAAGGGCTGCTTCCTTCAATATCATTCCAAGCAGCACTGGGGCTGCCAAGGCTGTTGGAAAGGTTCTGCCACACTTAATGGAAAATTGACTGGAATGTCCTTCCGGTTCCTACTGTGGATGTGCTCTGTTGTTGACCTCACCGTCAGGCTTGAGAAGCAAGCAACATACGCAGGCTATCAAATCGGCCATCAAGGAGGAGTCTGAGAATAACCTCAAGGGTATTCTGGGTTACGTTGAAGAGGATGTGGTGTCTACTGACTTCATTGGTGACACGCAGGTCAAGCATATTCGATGCCAACGCTGGAATTGCTTTGAACGATAACTTCCGTGCAAACTTGTGCTCTTGGTATGACAATGAATGGGGGTACAGTTCACGCGTGATTGACT | |||||||||