| mature miRNA: GCCAAGGATGACTTGCCTGC species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164396135|gb|DB946280.1|DB946280 DB946280 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_024_E1 GCCAAGGATGACTTGCCTGC EST sequence (targeted fragment marked with yellow): CAAATGGGGCCCTCCCCATCAATTAGGTTTCCACCTAAAGTGATGGGCCCCCAACTCTTGCACCGGCAAAGCTGGATGCATCTTGCATACTCAACTTGGGGTTGGCATCCTATTCTATGTAGTGACTTCCTCAGGCAATTCATTCTTGGCTTTGGATACTTTGTAACATGGCGCATTCTCAAAGGTAAAGGAAGACGAAGATCTTCATGGAGTTCCATTTCACTTCCACTCGCCGCTTGTGTAAAAATACTGAAAACTTCAGTTGTGTAGGTATGCATTAGGAATAGTTTGAACGTGTAGTAATTACAGATAAGTTTACTTTTGAGCTACATGCAAGTGTGAAGACTTCTTCTGTTTGTGACAGGAAAAGGGTTACTACAGCTGCCTGCTGAATGTACATTTTAACATTGTTGTTAGTTGGTGTTTGTTTACTGTGTTTTGCTTATTGTTGTGAGATCTCCAACAAGAGCTGGGATTAATGAATGAGAGATTCTACAACT | |||||||||
gi|164394457|gb|DB945954.1|DB945954 DB945954 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_C2 GCCAAGGATGACTTGCCTGC EST sequence (targeted fragment marked with yellow): CTAACGATGAATCCATTTTTAGGCAGTCAGATCACCGTTTCGCAAGCCTAGCTGCACATATCGGTGGTAGCATCCAAAGCAGTGGGGGTCTTATGTGCAGTGGAACTTAGAACTATGCTTCCAGTTGTCCGGATACCATTCCGGGCGGGCAATTCATCCTTGGCTTTGTCTATTTCTTGCTATTATAAGCTATCACGTTTTGTTATGAAATAAGCTTCTGACTTAACTGTGGTGTTTGCTTTTACGAGTCTCATGTTTGTGTTTAACATTACTGAAAAAAGTTTGCTTTTGGGATTTTGCATTGTGGGTGTTCATCCATTACTTAGCTTACTTCATGTGATGGCCAGAGATGTGAGGTTTG | |||||||||
gi|119010381|gb|DV448363.1|DV448363 CV01024B1A11.f1 CV01-normalized library Manihot esculenta cDNA clone CV01024B1A11.f1, mRNA s GCCAAGGATGACTTGCCTGC EST sequence (targeted fragment marked with yellow): GTCACTNNNNNATTTCTGAAGCCATATCTTCATGAATCTCGGCACCTTCATGCACTGAGGAGGGCTAGGGGTTCTGGTGGACGCTTTCTCAATGCGAAACAGTTCCAGGAGTCCAATCCTAAACTCTCAAGCCTGGATGCCACAGGCACTGCTGAACTTCATTTGGCCGGAAATATGTCAGAATCTGAAATTCATCAGCCAGAAAATCACAGAGATTGTGCTTCTACCACTTCTTGCTCAGATATCACAAGTGCCTCCAACAGTGATGACATCTTCCAGCAGCCAGAGTTCAAGTTCTCTGGGTACCCTTCCCATGTGGTTGGGACCATGCAAGGGCGCTTAGTTGGCATGCATGGCGGTGGAAGTCAGCACCATCTTCCTGTTCTGTGAGAGAAGAGGCTACGACCAACCTCAGCAGTATGTGTTTGTCACAGCTGCTAATGTTCCCTGGGAAGTCATCCTTGGCTCAGTTAATCTGCATTTTGTTTTGTCTCATTGCATGCAAGCTTATTCTCAAAAACTTATGATGTGATGTGATGTGTGTGTTCATTTTGTGGTTGCAGATACATGTGAATTGAAAACTTTATGGCAACTGATGTCAAATTTAAGATAATGTTTCATTTTGCTCAAAAAAAAAAAAAAAAAATCG | |||||||||
gi|219215600|gb|FG805107.1|FG805107 K077F01 Cassava root 210-day-old plants cDNA library Manihot esculenta cDNA, mRNA sequence GCCAAGGATGACTTGCCTGC EST sequence (targeted fragment marked with yellow): TCTCGTACTCTGAAGCTAAAACATGTACATGGAGGCACCTTCTACCTCAAACACAATGGCTTACAAACCTTGACACATCACTCACTTGCAGGGGAAAAGGGGGAGGAGGGAGACTGTTCAGGCCAACAACGGGGGAGCATTTCCTCAAATCAGGCCTCACAGAGGCCGCTTTCTATCCAGTGAACTCCAGTATGCTAAGTGGACACCAAGATGGAGGATTGGATTCACCCTAGCAGAGACAGCTGAATCCTCCTAATTTTTGGTGACCACATCCCTGGCAAAATGTTGCCAGGCGGCAATTCATTCTTGGCTTGGTTTCATGTTTACGACTCTAATGACGAGAGCGAGACGAGGGATGGGATGAACAGGTGTTGGCTTCTTTTAAGTCGGCCAATCCTCTACCATCTTTTTCCCATTTTCACTTTTCATGTGTATAGTAACATGTGGAATAAATGCGAGTAGAAATAGTCTGTGTGGAGAGCTTCTAAATGGGGAAACAGCTCTTTTAAGTTTAGCATAGGAACTGTGTTTGTCCGACTGACATGGGTTTATTTGCGTGCAATTGGACGGTGGACATTTTACTGCCTCTCTCCATTGATGGTGTATATTTACC | |||||||||
gi|164394889|gb|DB945970.1|DB945970 DB945970 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_D2 GCCAAGGATGACTTGCCTGC EST sequence (targeted fragment marked with yellow): CTTCCACCCCTTCTTGCTCAGACATCACAAGTGCATCCAACAGAGACGAAACTTTCCAGCAGCCAGAATTCATGTTCTCTGGGTACCATTCTCACATTGTGGGGACCATGCAAGGGCGCTGAGTCGGTACGCGGAGGCATACAACAAATCTCGTACGCTCCTTGTTCGGCAACAATCTGAAGAGTTGCTTATGTTCCCTTGGGAAGTCATCCTTGGCTCAGTTAGTCTGCATTTAGTTTGTTTCATTGCATGCAAGCTTATTTTGGAATAGTAGTGATCTGACTAGACGCATCTGTATTTTGTGGTTGCATGTACTTTTGTTCTAACACTTGCACTAATGTATGGGTGGAGCTCTGCATATTTGTCCATTTCATCTTTGGTTCTGCAAGTTCTCGCTCAACTTTTCTCCACTTTTAGCTAAAGTGATGAAGTACCTTTATGTGCCATTGCAAAATGATGCCAAGTTTTGTTTGAT | |||||||||
gi|119018022|gb|DV454709.1|DV454709 CV02016B1H05.f1 CV02-normalized library Manihot esculenta cDNA clone CV02016B1H05.f1, mRNA s GCCAAGGATGACTTGCCTGC EST sequence (targeted fragment marked with yellow): TCCGATAAGGCAACAGGCTCTGCCGAGCTTCATTCGGCTGGAAATATGTCAGAATCTGAAGTTCATCAGCCAGAGAATCACAGAGATGGTGCTTCCACCCCTTCTTGCTCAGACATCACAAGTGCATCCAACAGCGACGACATCTTCCAGCAGCCAGAATTCATGTTCTCTGGGTACCATTCTCACATTGTGGGGACCATGCAAGGGCGCTGAGTCGGTACGCGGAGGCATACAACAAATCTCGTACGCTCCTTGTTCGGCAACAATCTGAAGAGTTGCTTATGTTCCCTTGGGAAGTCATCCTTGGCTTAGTTAGTCTGCATTTAGTTTGTTTCATTGCATGCAAGCTTATTTTGGAATAGTAGTGATCTGACTAGACGCATCTGTATTTTGTGGTTGCATGTACTTTTGTTCTAACACTTGCACTAATGTATGGGTGGAGCTCTGCATATTTGTCCATTTCAAAAAAAAAAAAAAAAAATGC | |||||||||
gi|164376945|gb|DB953908.1|DB953908 DB953908 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_048_A2 GCCAAGGATGACTTGCCTGC EST sequence (targeted fragment marked with yellow): GCAGCAGCAGATAACTGCTGCAACCTGAAAGTTTAATGGCAAAGGGTTTGATTGGGCTGAGTCCCAAATTCCATCCCCTAAGCATACAAATGAAAAGGTCTGTTTTGTTGGCAGAGCTTTGTGTGGAGATTGACTCCTACATTTGGTTGCTGGGCAAATCATTCTTGGCTCATATGCATTAAGCTCATCTCTATCATTCCATGAAATTCTGAATTCACTGGATGACCAGAGATGAATACCTTAATGGATACTTATAAAAAAAATTAAGGATTAGGACTAGAAAATAAAGTGGGTCCATCCTCATCCCTCTTGTAATAATTATGTGAAAGTCTGGTTGTGTGGCTGTGATCTTACATTATGTTGAAGCATGATCTGTCTGGCTTGTATTATCACCTATATTTCTGTAATCACCATGTGTTGTCC | |||||||||