miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GCCCAGGATCATGTCATGGTG
species: Populus tremula x Populus tremuloides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|38577488|gb|CK093163.1|CK093163 G110P35.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clon

GCCCAGGATCATGTCATGGTG
| ||||||||..|||||.||
AGTGTCCTAGTGTAGTACTAC

EST sequence (targeted fragment marked with yellow):
GAAAACAAGGAGCATTGGTGGTATGCTACCAGTACAAGATTGCACTGGAGTGCACAGGGATTGCTATTGCATCATGATGTGATCCTGTGATTGTGCCCGAGATCTAAGCCTAGTAATATATTATGGACGGTAGATGAGGCTAGAGTGGCAGATTTTGGGGTGGCAAAGCTGATCCAAAGTGACGAATCCATGTCAGTCATTGCTGGGTCTTATGGCTACATTGCGCCAGAGTATGCTTACACACTGCAGGTTGATGAGAAGAGTGATATTTATAGTTATGGGGTGGTGTTAATGGAGATTATAAGCGGCAAGAGGTCGGTCGATTCTGAGTTCGGGGATGGTAATAGCATTGTTGACTGGGTAAGGTCGAAGATAAAGGCTAAGGACGGTGTAAATGACATTTTAGACAAGGATGCTGGGGCATCGATTGCATATGTGAGGGAAGAAATGATGCAAATGCTTAGAATTGCTTTGCTATGCACCAGCCGGAATCCGGCGGACCGACCGTCGATGAGGGATGTCGTGTTGATGCTGCAAGAAGCCAAGCCCAAGAGGAAACTGCCGGGAAGTATAGTTAGTGTTGGTAGTGGTGACCACATTGTTACTGTTGATGGGGCTATTGCACAAAAGCCTGCAGTTGAATGTTGATATAAATTAATTTTACTGGTTTTTTCTTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA