| mature miRNA: GCCCATTGATTAAGATGGTA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18019031|gb|BI138083.1|BI138083 F098P32Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence GCCCATTGATTAAGATGGTA EST sequence (targeted fragment marked with yellow): GGTTTTACTACCTACTGCTGCAAGGATTTTCAAGAAAGATTGAAATAGTCTAAAGATTATACAAGCTTCTAGCTAAATCACCTGGTCAATAAATTTGAAGGCGATTGTCAATAAGGACCCGTTCGATCAAGGCGGCTATGGATTATTCATCGTGGGTCGATACTTCTTTGGATCTTAATATTAATCCTTTAAGAGTGAAAAGTGAAGTTCCGGTAGATGCAGAAAGATTTGGGATGGCAAGAGAATTGAAACCCACTTTCATGGATTTTCAGACCAAGCCTTCAGCCAAAGAAGAGACTGGAGCTTTGGTAGTGGAATTGAACCGAGTGAGCGAAGAAAACAGGAAGCTAACTGAAATGCTAACTGTGATGTGTGAGAGCTACAATGCTTTAAGAAGCCAGTTGATGGATTACATGAGCAAGAATGGAGAAAAGGAGCTTCTTGCCCCATCAAAGAAAAGAAAGTCTGAAAGCAGCAACAACAACGATAATAACATTGTAATGAATGGGCACTCTGAGAGTAGCTCAACTGATGA | |||||||||
gi|73882743|gb|DT485481.1|DT485481 WS02528.B21_F10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_F10 3', mRNA sequence GCCCATTGATTAAGATGGTA EST sequence (targeted fragment marked with yellow): TAAAGATGAAGTTGAGGCATTGATTCAAGTTAGAAGTAGAATAGAGATTAAGTTTCAAGAGCCTGGCTTAAAGGGTCCTCTTTGGGAAGAGGTAAGTTTTTTAATGAGTTCAATGGGCTATCAAAGAAGCTCCAAGAGGTGCAAAGAAAAGTGGGAGAACATCAACAAATTCTTTCGAAAAGCCAGGGAAAGTCCAAAGAGGGGGTCTGCGCGATCCAAAACCTTCTATTATTTTAATCAATTGGATCAATTATAGTCAGGAACTCTCATTAATTATCCTGCTAGCTCTGCTGATATTCCATCAAGTGGCATTGAGTTTGGCATAAAAAAGCAAGGCTATTCAGAGCTTTTTGAAGTCTTTTCTGTCAGGAGAGATTTCCTTGCAAATGTGAGGAATCCTCCTTGGTGTGAGCGTAATAAGTTCTGAAATGGGCTTTTCGAGATTTGAATTCGATGGATTTTCTGTCCAAAACACAGTACTAGAAGAAGGAAGCAGTGAGCAGTATATAGAAGCTTACAAAGATGATAAGCAAAAGGATGGTGAGCAACAAAATGGTGGTGGTGGTGGTGACGAAGAAATCGAGATTTGAGGGTAAGCGTTGTTGAATAGAATACCATGTTCATATCGGTTTTAATTGCAAGTTTGTTCTTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73872063|gb|DT474801.1|DT474801 WS0125.BR_A17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0125_A17 5', mRNA sequence GCCCATTGATTAAGATGGTA EST sequence (targeted fragment marked with yellow): GAACTTCTTGGTTTTTAGTTTTACTACCTACTGCTGCAAGGATTTTCAAGAAAGATTGAAATAGTCTAAAGATTATACAAGCTTCTAGCTAAATCACCTGGTCAATAAATTTGAAGGCGATTGTCAATAAGGACCCGTTCGATCAAGGCGGCTATGGATTATTCATCGTGGGTTGATACTTCTTTGGATCTTAATATTAATCCTTTAAGAGTGAAAAGTGAAGTTCCGGTAGATGCAGAAAGATTTGGGATGGCAAGAGAATTGAAACCCACTTTCATGGATTTTCAGACCAAGCCTTCAGCCAAAGAAGAGACTGGAGCTTTGGTAGTGGAATTGAACCGAGTGAGCGAAGAAAACAGGAAGCTAACTGAAATGCTAACTGTGATGTGTGAGAGCTACAATGCTTTAAGAAGCCAGTTGATGGATTACATGAGCAAGAATGGAGAAAAGGAGCTTCTTGCCCCATCAAAGAAAAGAAAGTCTGAAAGCAGCAACAACAACGATAATAACATTGTAATGAATGGGCACTCTGAGAGTAGCTCAACTGATGAAGAATCATCCAAGAAACCAAGGGGAAGAAGTCATTAAAGATAAGATTTCGAAGGCTTATGTCAGGACTGAAGCTGGTGAACAAGCCTTATT | |||||||||
gi|73882167|gb|DT484905.1|DT484905 WS02526.B21_L22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_L22 3', mRNA sequence GCCCATTGATTAAGATGGTA EST sequence (targeted fragment marked with yellow): CTCCACAGCCAACTCCACAACACCCAACATGTCATGTGCTGAACTCTCCACCATCGTCACCACCCTTCAAAACTGCTCCCCTCATTGCAATTTCCTCGTTTTTGGCCTGACCCACGAGACCCTTCTGTGGAAATCACTCAATTTCCATGGTCGTACAATCTTTCTTGATGAAAGTGAGTACTTTGTTTCGAACTTTGAAAAAGACCACCCTGATATCGAAGCTTATGATATACAATTCACCTCCAAAGTTAGTGAAATGAGTGATCTTTTATTAGTGACAAAGGGGCAAGTTAATGGTGACTGCAGGCCTGTACAAAATCTACTCTTCTCTGATTGTAAGCTTGGCATAAATGACATGCCTAATCACATTTATGAAATCTCTTGGGATGTGATTTTAATCGATGGGCCTCGTGGGTATTTCGCGGCGGCTCCAGGGAGGATGTCACCAATATTCACTGCTGCTGTTATGGCAAGGAGTAAGAGAGGAGGCAACAAGAAGACACATGTTTTTGTGCATGAAATTGATAGAGAAGTTGAGGGGGTTTATAGTGAAGAGTTTCTGTGTGAAGAGAATCTGGTAGAGACTATTGATTCACTGGGACATTTTGTGTTGGAGAGAAAGGAAGCTAATTGCTTTGAGTTCTGCAAAAATTCGACATCTTTGTCATCATCATTGCCAACTTCAATAACAAAGACGGCATCTTTATCATCTGGGGATGATGATTTTGATGATTGAGATCAGGGGTTTGTGTGATTACTTGTACCATCGCATATCTTTCTTTCCTTCATTCTTTTAATATAGAAATGTAGTTTTT | |||||||||
gi|52395694|gb|CV236273.1|CV236273 WS01223.B21_I09 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_I09 3', mRNA sequence GCCCATTGATTAAGATGGTA EST sequence (targeted fragment marked with yellow): ACTAGTTTAATTAAATTAATCCCCCCCCCCCGCTCTATACTTGCTAGCTCTTGCTCGCCTCCTCCTCCTAATACTCAGTTTCATATTGCAAAATGGCAAATTTAAGCAAATGGTTGTTTTGTTTCCTAGTTTCTACTACGGTGATAGTAGCAGCAGTTGGGAGAGAGATTTCTGACGGAGAAGAAGCAAGGAGAGAAGCTGATAGAGTGACCAATTTGCCTGGGCAACCACAAGTAAGGTTTCAGCATTATGCTGGTTATGTAAAACTTGGACCCCAGAATCAGAGGGCATTGTTCTATTGGTTCTTTGAAGCAAAAGAGGACGCTTCTCAAAAGCCTCTTGTTCTGTGGCTTAATGGAGGACCTGGGTGCTCCTCCATAGCTTATGGCGCAGCGCAAGAACTTGGCCCCTTTTTAGTTAGGGGAAATGGAACACAGCTTATTCTCAACGAATACTCTTGGAACAAAGCTGCAAATATGCTTTTCCTGGAGGCTCCTGTGGGCGTGGGATTTTCATACACAAATAATTCCGAAGATCTATATAAACTAGGTGATAAAGTTACAGCTGATGACTCTCATACCTTCTTAATCAATTGGTTCAAAAGGTTTCCAAATTTCAAATCACATGATTTTTATATAGCTGGAGAGAGCTACGCAGGGCACTATGTTCCCCAACTAGCTGAGCTCATTTACGAAAAAAAAAAAAAAAA | |||||||||