| mature miRNA: GCCTGGCTCCCTGTATGCC species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190495688|gb|FG882648.1|FG882648 UCRVU07_CCNP14891_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vig GCCTGGCTCCCTGTATGCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTGAAACTAAAAGAAACAATACATATTACAAAATAAAAATATCTCTGAGACCAATCATTTATAAAAAAAAAAGAAACAACTAATAATTAAATAAAATAATACACACAAAAGTGAAAAATGATAAACTCGAGGCAATTAATCCCATGAGCATCAAGAACAGAAGCAGCCACAAAACAAGTGACAAGTGCACGATAGCATCCACGGAATTGGGGTGCGCCGGACGGGATCACCACCGGGTTTTTACCGCCAAGCCTGACGGGTTTCCGGTTCACTTTCGACCCGGAATCGTTCATTTCCACACTTGCCCCTCCCCACAAACGGTGCCGTTTCGTGTACCACCAAATAATCTTGTACTTGATCGCCGTAGTGAAGTCCACGCGGTACACCACCTTCCCGGCAACCGTCGTGGTGAGGTTACCGCCGCCGTTGAGGGAGCCAGGCTTGAAGGCCTTCTTGTTGCGGCCCTGGTAGAAGCGCTGCACGGTGGCGTTCCCGAGAGGGCGCGTGGTGTTGTTGCTGACGAAGACCTTGAAAGTGAGCTGAACGTCGTCGTATTTGATTCCGGTGTCCTTGTTCCTGTTGGCGAGCCTGAGGGTGAAGAGGATGGTGGTGTTTCCGGGAGAGGGATTTAGGGTTTTGTTGAGGGTAGGAACGTAAATTTTTTCGAGGTACAAATGGGGTTCGTCCACGCGCATACTCAGCCACAGGAACAGCGCGGTTAGACCTATGGTTATAACGAAGGTGGTGCAGCGTGTGCAGCAGCTATCCTGCGCCGCCGCCATCTACGGTGGCCGGAATTTGGAT | |||||||||
gi|190417495|gb|FG815287.1|FG815287 UCRVU04_CCNI2890_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna u GCCTGGCTCCCTGTATGCC EST sequence (targeted fragment marked with yellow): GTTCTGGTGGTGGTGGTGGTGGTGGCGGGATTGGCCCTTACGGGGCGTTTTCAGCTTTCTTGAGGGAGGAGAGCAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTACTATGGCTGCTAACAACCAACCCTTTGAGGTTGTTTATTACCCTCGAGCCAACACTCCCGAGTTTTGTATCAGAACTTCTGCTGTGAGGGGTGCTATGAGGATTCAGTGGTGCTCTGGGATGAGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGCACCATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCCAATTCGCCTTGGAGGCTTCTTCAGGTTACGTGGGATGAGCCAGATTTGCTGCAGAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACATGCCAGTGATCCATCTGGCACCATTCTCTCCGCCAAGGAAGAAGCTTCGGTTTCCACAGAGCCCAGAGTTTCCCCTTGATGTTCAATTTCCGATAGCAACGTTTTCAGGCAACCCCTTTGGGTGTAGCGGCAGTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAA | |||||||||
gi|190447817|gb|FG839174.1|FG839174 UCRVU05_CCNN3249_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 V GCCTGGCTCCCTGTATGCC EST sequence (targeted fragment marked with yellow): AATTGGGAGAATGGAACAGCAGCAGAAATAGGTCTAGAACATGTTGTTGATTGCATTGAAAGAATAGTTGGGAGGATTTGAATCTTACGATGCAAGCGTGGAGTTTGGTACAGGTTACGTGGGATGAGCCAGATTTGCTGCAGAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACATGCCAGTGATCCATTTGGCACCATTCTCTCCGCCAAGGAAGAAGCTTCGGTTTCCACAGAGCCCAGAGTTTCCCCTTGATGTTCAATTTCCGATAGCAACGTTTTCAGGCAACCCCTTTGGGTGTAGCGGCAGTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACCATAATAAGCTGCAGTTGGGGTTGCTTCCAACCAACGTTCGCCAGCTTCATTTGCAAAATGGGATTTCTAATGTCAACATCACCAACCATGGTAAGAGTAAAGAAAGCCTTTCGTGCTTGCTCCCAATGGCAAGTCCACGCAAGAGTTTGGAGAAATCTGATCAAGTCAAGACACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATCTCTACATCTTCCACCGCAACCGCAACCGATGATGACAAC | |||||||||
gi|182656067|gb|FF551696.1|FF551696 MOPFD72TF MOP Vigna unguiculata cDNA 5', mRNA sequence GCCTGGCTCCCTGTATGCC EST sequence (targeted fragment marked with yellow): GGGCCTTTGAGACCGAGGATGCTTCCAGAATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATTCGCTGGCCTAATTCCCCTTGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTGTCAAACTTGCCAGTGATAAATTTCACACCTTTCTCTCCACCGAGAAAGAAGCTGCGGTTTCCGCAGCAGCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCACCGTTTTCAGGGAACCAGCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCAGACAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTCTCAGATCTCCACCTTAACAGTAAACTGCAGCTGGGGTTGCTTCCATCTAATATCCAGCAACATGGATTCTATAGTGGGATTTCAAGTGGTAACACCACCAACCATGATAAGAGCAAAGAAAGCTTGTCACACTTGCTCACCATAGGCAAATCTACCAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACATCAGTTTTTGCTTTTTGGTCAGCCGATACTCACTGAGCAACAGATTTCTAGAGATGTGTTGTCTCGTGCCAAAAAATCATCGGATGATGTCAAAGACAAAGAGAAGTGCTTTCTGGATGATTCCCAACCTTCACTCTTTTCATCAGGAA | |||||||||