| mature miRNA: GCCTGGCTCCCTGTATGCCA species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|257188032|gb|GT046742.1|GT046742 CLS_cLiFproots_64a4_1_d24cLibkit5LD_B12 CLS_cLiFproots_plant Festuca arundinacea cDNA clone GCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): AGGACGGAGTGGACGCCCGGATCGTCGGCAAGATCGAGGCCTACCAGCCACTCTGCTCCGTCAAGGATCGCAGCGCTTTGAGGATGATTGAAGATGCTGAAGAGAAAGGGTTGATTTCACCTGGTGTCACGACTCTGGTAGAGCCGACGAGCGGGAATTTGGGGCTAGGATTGATCCTCATTGCTCTGAGCAAAGGTTACAGGTTCATCGCGGTGATGCCAGGCCTGTACTCGCTTGATAAGCAGATCTTGTTGAGATACATGGGTGCTGACCTGTTCTTAACTGATCCAGCACTCGGGTTTCCAGGAATAATGGACAAGGTCGAACAGCTGAAGAAAGAATTACCCAACGTACATGTTCTTGATCAGTTCTCGAATCCAGCAAATCCTGATGCACACATCAGATGGACTGGTCCTGAGATTTGGAAAGATACTGCTGGAAAGGTGGACATTTTTGTTGCCGGTTCAGGCTCAGGAGGTACGGTATCTGGTGTCGGAAAGTATCTGAAGATGCAAAACCCAAATGTGAAGATCATTTGTGTGGAACCTGCAGAGTCCCCGGTAATTGCAGGTGGGGAGCCAGGCAAGCATAAAATCCAAGGAATAGGACCGGGATTCATACCAGAGATCTTGGACACCTCGGTCATCGATGAAGCAGTCAGTGTGACCACTGAGGATGCAATGACAAACGCAAGGAGGTTGGCAATGGAAGAAGGCCTGCTTGTGGGCATATCTTCTGGAGCTAATTTGGCAGCTTGCTTGAAGGTCGCAGCAAGAGAAGAGAACAAGGGGAAGTTGATTGTGACCATGTTCCCTAGCGGAGGCGAGCGATACATGAACTCAGACCTCTTTGCCACCGTGAGAGAAGAGTGTGTGGCCATGACCTTTTGATCTCACATCTTATTCGGAAGAGTTGTATGTAATGGTGATGTGTTGCACGATCTTGCTACGGAGTTCATCTACAAGGTTCCATGAATAGTTATTGGTCAAGAAATAAATGTCCATGAATTATTATTAGATCATCTGATTCACGATCGATAGCAGCAAAGCAGACATCTATGTTGTGATTTAAATTTACTAGGTATAAT | |||||||||
gi|257176628|gb|GT034493.1|GT034493 CLS_cLiFproots_15a3_1_h01cLibkit5LD_D01 CLS_cLiFproots_plant Festuca arundinacea cDNA clone GCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): TGGGGTTAGGATTGATTCTCATTGCTCTGAGCAAAGGCTACAGGTTCATCGCGGTGATGCCGGGCATGTACTCGCTTGATAAGCAGATCTTGTTGAGATACATGGGTGCTGAGTTGTTCTTGACTGATCCAGCACTCGGGTTTCCGGGAATATGGGAGAAGGTCGAACAGCTCAAGAAAGAATTACCCAATGTCGGGGGGATGGCCCCCGGTAAGCCAAGTCTATGGCAAACATGCCGTGGTCCTGAGATTTGGAAGGATACTGCTGGAAAGGTGGACATTTTTGTTGCCGGTTCAGGCTCAGGAGGTACGGTATCTGGTGTCGGAAAGTATCTGAAGATGCAAAACCCAAATGTGAAGATCATTTGTGTGGAACTAGCAAAGAGTCCAGTAATTGCAGGTGGGGAGCCAGGCAAGCATAAAATCCAGGGAATAGGACCAGGATTCATACCAGAAATCTTGGACACCTCGGTCATCGATGAAGCAGTCAGTGTGACCACTGAGGACGCAATGGCAAACGCGAGGAGGTTGGCAATGGAAGAAGGCCTGCTTGTGGGCATATCTTCTGGAGCTAATTTGGTAGCTTGCTTGAAGGTCACAGCGAGAGAAGAGAACAAGGGGAAGATGATTGTGACCATGTTCCCTAGCGGAGGCGAGCGATACATGAACTCGGGCCTCTTTGCCACTGTAAGAGAAGAGTGTGTGGCCATGACCTTTTGATCTCACATTTTATTCAGAAGAGTTGTATGTACAAGGTAGATGTGGCCGGTTACCGTGATGTGTTACACGATCTTGCTACGGAGTTCATCTACAAGGTTCCATGAATTTATGTTGGTCAAGAAATAAATGTCCATTAATTATTACCAGATCATCTCATGCCAAGATTGATGGCGGAAAAACAGAAGATCTATGTTGTGAATTTAAATTTACCTGTTAGTTCTTTGGTACATGCATAAATTTATGCTTTGTGAAAAA | |||||||||
gi|74423966|gb|DT680141.1|DT680141 s13dFA19H10DS092_77933 Tall fescue, Festuca arundinacea Schreb, Drought Stress Festuca arundi GCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GGCACGAGGTAGCAACCAGGGAGCTAGGCGTACGTCAATGGCGACCATAGCCACCATGGCCATGCTCAAGCCCGCCGCCAAGATCCAGGCGCCGTCGTCCAGCGCCGCCAGGGCGTCGCCGACCGGCATCTCGCTGCGCACCCTGCAGAAGGGAGCCCTGGCCGTGTCCCCCGCGGCCGCGGCCATGGCGGGCGCCTTCTTCTCCTCGCTGGCGACGTCGGACGCGGCGATGGCGGCGCANAGGATCGCCGACGTGGCGGCGGCCTCGCCAACCGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGTCGCCGGCGCTCGGGTGGGTGCTCTTCAACATCCTGCAGCCGGCGCTCAACCAGCTCAACAAGATGCGGTCCGAGAAGGCGCTCGTCGCCGGGCTCGGCATCGGCGCCG | |||||||||
gi|74435194|gb|DT691369.1|DT691369 s13dFA43A09HS065_336427 Tall fescue, Festuca arundinacea Schreb, Heat-stressed shoots Festuca GCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GGCACGAGGGTTTGTTCTAGAAACGCGGTGGGGGGAAGTGCATTACACGCTCGCGCACTCCTCCATCTTCTACTCGAGCCTGTCGCATTTTCCAGTATCTTGCGAGAAGGAAGGGTAGCTAGCAACCAGGGAGCTAGGCGTACGTCAATGGCGACCATAGCCACCATGGCCATGCTCAAGCCCGCCGCCAAGATCCAGGCGCCGTCGTCCAGCGCCGCCAGGGCGTCGCCGACCGGCATCTCGCTGCGCACCCTGCAGAAGGGAGCCCTGGCCGTGTCCCCCGCGGCCGCGGCCATGGCGGGCGCCTTCTTCTCGTNNCTGGCGACGTCGGACGCGGCGATGG | |||||||||
gi|257173691|gb|GT035474.1|GT035474 CLS_cLiFproots_18a2_1_i16cLibkit5LD_E08 CLS_cLiFproots_plant Festuca arundinacea cDNA clone GCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CGGGGGTTGCAGATGTGAATGTGTCAGCCCATGGCTTGTGGAGCTTGTATCAAGCATTCCACCTATCCATTTGGGACCATTTTCGCCTCCACGAAAGAAGTTACGGGTTCCCCAACATCCAGATTTCCCATTTGATGGTCATCTGTTTAATCCCATTTTCCATGGGAACCCACTTGGTCCTAGCAACAGCCACCTATGCTGTTACCCGGACAACTCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGTTTACCATTGACAGATCATCAGCTTAATAAGCTGCACCTCGGTCTGTTCCAGGGCGGCGGTTTTAACCGGTTCGACGCCCTAACCCCGTCTTCTCGGATACCCAAGGGATTTGTGATCAGCAGCGCACCAGCCCATGACAGTGTCTCTTGCGTGTTGACGATTGGTACACCACAGAGCGCAAAAAAATCTGATGACAGAAAGACACCACACATAATGTTGTTTGGAAAGGCTATCCTTACCGAGCAGCAGATAACCTCAAGTGGATCAAGAGAGACACTTTCCTCTGGGGCTACTGGAAACAGTTCTCCTAACGGCAATGCGATGAAGGCAGGAAATGTATCTGATGGTTCTGGTTCGTCAATTTGCATTGACTTTTCGTCCCAAGGCCACGAGGCCTCTGACCTTGGATTAGAAGCTGGACACTGCAAGGTATTTATGGAATCGGAGGATGTTGGTCGCACCATTGACCTTTCAGTGTTTGGGTCGTACGAAGAGCTGTACGGCCGTCTGTCTGACATGTTTGGAATCGAGAAAGAGATCATAAGCCATCTCCGTTACCGCGACACAGCCGGTGCAGTCATGCATACTGGCGAATTGCCATTCAGTGACTTCATGAAAGTAGCACGGAGGCTGACAATAATAACCGGCGAAAATGGAAGGCTGCCGAAACCTCTCATGGAATGCATGGTTCAGCTGGTGTGATCTCTCGGCCTATTTGACCGTGAATTTCGTCAAG | |||||||||
gi|74441618|gb|DT697793.1|DT697793 s13dFA48E03LF023_88299 Tall fescue, Festuca arundinacea Schreb, leaf Festuca arundinacea cDNA GCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GGCACGAGGCCGACCTCCCGCTCGACGGCCAGTTTCCGGGCCCTATGTTCCATGGAAACCCACTCGGACGCGGGGTCGGTCCGATGTGCTATTTCCCGGACGGTACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTGTCACCGCACGGGCTTCACCAGATCGATCACGGCGCGCAGCCGAGGATCGCCGCTGGGCTTATCATCGGTCATCCAGCAGCTCGAGACGACATCTCGTGCGTGTTGACCATTGGTAATCACCAAAACAACAAGAAATCAGATGTCAAGAAGGCTGCACCCACCCAGTTGATGCTCTTTGGGAAACCCATACTAACGGAGCAGCAAATAACACTAGGTAATTCTGGGGGTTTCTCTCCAACTGCTGCTAGGAAGAGCCCTTCTGATGGGAGTGCCGAGACGTCGGCGAATAACTCTGATACTCCCAGCCCANAGAGCAACCAGAATGGTCATACAGAGAACTTGTCCTGTGGAGGAGTTCCATTGTGCCAAGATAACAAGGTACTTGATCTTGGGCTGGA | |||||||||
gi|257189332|gb|GT049494.1|GT049494 CLS_cLiFproots_76a3_1_d07cLibkit5LD_B04 CLS_cLiFproots_plant Festuca arundinacea cDNA clone GCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CCAGCACATCAGTTGGAGCTTTCTCTCAGAACATCTGATTATAGCCGATCAGAAGACCCTGAGAAAAATGATAAAAGAACACTGAACCACTCAACAGCATCTGCGTTTTCATTGTACAACTGCAAGCCTACATCCTCTTTCGGTAACGCTGCTGATGCCCAGCTATGTAGCACCTCAGCAAACCATGAAGATCTGGGAAACAAAAATGGAGATCCGGCAGCTGCCTCTCAAGACAAGGCCAACACAACTCGTCCTCCTATAAGAGTTGTACCATTTCCTGTCCCTATTGCAGGCCTCACGTTTGATGGGCAGCCATTCTGGGGCGGTGCGCCTGTGGCACCACTCCTCTATCCACAGTCAGGACCCCCCATTTGGAATAGCGAAACTGCAATGTCACAACAAGCGTCCACACAAGCAACGTCTTCACAGCAGAAGCGGCAACAGAATGATCTGACGGAGATGGATTCTCAGCAGACTGAAAACACACAGGGACAAGAAGTTCTACCTGCACCAAATGGAAATGAAAAGCATCTGCAAGTTGAAATTCCTTCAGACAACCAGCGGCACGTCTCTCTCATGACCGGTGAAAGCGGAAGCAGCAATGTGCTGAACAACTCCGGCAATGGTCTGAGTGGCAGTGCCTGCGGCAGCTCTTCCAACCCGATCACTAGCCCCACTGAACCATGCAATGCATCCAGTGGTGTTCCTGAGAATCCAAGCATGGAGGGTTCACATCACCTGAGCCAGCGAGAAGTTGCGCTGAACAAGTTCCGGCTTAAGAGGAAAGAACGGTGTTTTGAGAAGAAAGTACGATACCAGAGCAGGAAATTGCTTGCAGAGCAGCGCCCCCGCGTGAAGGGTCAGTTTGTTCGTCAAGATCAAAGCATACAGGGAGCTAGGTGTCTTCGCCTGTGACAACCGGCTGCTGTGTGTGCCTACGGGTATCCTGGCGTCCAGTGTTCTGGTTTTCTCTGAAAGAGTGTA | |||||||||
gi|74451581|gb|DT707756.1|DT707756 s13dFA16H07ST060_112606 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD GCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GGCACGAGGCTTGTGAGGAGGAAGGAAGGTAGCTAGCAACCAGGGAGCTAGGCGTACGTCAATGGCGACCATAGCCACCATGGCCATGCTCAAGCCCGCCGCCAAGATCCAGGCGCCGTCGTCCAGCGCCGCCAGGGCGTCGCCGAGCGGCATCTCGCTGCGCAGCCTGCACAAGGGCGCGGCCAAGAAGGGAGCCCTGGCCGTGTCCCCCGCGGCCGCGGCCATGGCGGGCGCCTTCTTCTCCTCGCTGGCGACGTCGGACGCGGCGATGGCGGCGCAGAGGATCGCCGACGTGGCGGCGGCCGCGCCGGCCGACGACAACCGGGGCCTGCTGCTGCTCTTCGTGGTGTCGCCGGCGCTCGGGTGGGTGCTGTTCAACATCCTGCAGCCGGCGCTCAACCAGCTCAACAAGATGCGGTCCGAGAAGGCGCTCGTCGCCGGGCTCGGCATCGGCGCCACC | |||||||||