| mature miRNA: GCCTGGCTCCCTGTATGCCAT species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211618572|gb|GE497034.1|GE497034 CCFS7768.b1_O21.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS7768, mRNA sequence GCCTGGCTCCCTGTATGCCAT EST sequence (targeted fragment marked with yellow): GGGATTTCTTGTCCACAACACACACACATTCCCTTTCCCCTTTCTCTCTCTTAGATGGAACCCTAGCTAATTGCTATCATGGGAAACTGCTGCAGATCTCCGGCGGTCGTCGCCAGGGAGGACGTCAAACCATCAAACAACGATCACAACTACAAGAAGGATAAGCCTGCCGTCACTGTTCTCAACGATGTATCAAAGGAGGAGAATATGGAGGATAAGTATATGGTGGACAGGGAGCTAGGGCGAGGCGAGTTCGGAGTTACATACCTCTGTATAGATCGGACCACCAGAGAATTACTAGCTTGCAAGTCCATCTCCAAGCGGAAGCTGCGAACAGCTGTGGATGTGGAGGATGTGCGCCGAGAAGTGGCCATCATGAAGCACTTGCCCCAGAATTCCAGTATTGTGACGTCGAGAGAGGCTTGTAAGGATGAGAATGCTGTGCATTTGGTCATGGAGTTGTGTGAGGGCGGGGAGCTCTTCGATCGGATCGTTGCCAGGGGGCATTATACCGAGCGTGCTGCTGCTAACGTTGCCAGGACTATGGTGGAGGTTGTGCAGCTCTGTCATAAGCATGGAGTTATTCATAGGGATTTGAAACCTGAAAACTTTCTGTTTGCTAACAAGAAGGAGAATTCGCCTCTTAAAGCCATCGATTTTGGCCTCTCTATTTTCTTNCAGCCAGGCGAGAAGTTCTCTGAAATAGTTGGAAGCCCTTATTACATGGCCCCAGAGGTGCTTAAGCGTAGTTATGGGGCAGAGATTGATATATGGAGTGCAGGAGTAATTCT | |||||||||
gi|211613802|gb|GE487896.1|GE487896 CCFS3320.b1_O14.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS3320, mRNA sequence GCCTGGCTCCCTGTATGCCAT EST sequence (targeted fragment marked with yellow): CGGGAGGACGTCAACCATCAAACAACGATCACAACTACAAGAAGGATAAGCCTGCCGTCACTGTTCTCAACGATGTATCAAAGGAGGAGAATATAGAGGATAAGTATATGGTGGACAGGGAGCTAGGGCGAGGCGAGTTCGGAGTTACATACCTCTGTATAGATCGGACCACCAGAGAATTACTAGCTTGCAAGTCCATCTCCAAGCGGAAGCTGCGAACAGCTGTGGATGTGGAGGATGTGCGCCGAGAAGTGGCCATCATGAAGCACTTGCCCCAGAATTCCAGTATTGTGACGTTGAGAGAGGCTTGTGAGGATGAGAATGCTGTGCATTTGGTCATGGAGTTGTGTGAGGGCGGGGAGCTCTTCGATCGGATCGTTGCCAGGGGGCATTATACCGAGCGTGCTGCTGCTAACGTTGCCAGGACTATGGTGGAGGTTGTGCAGCTCTGTCATAAGCATGGAGTTATTCATAGGGATTTGAAACCTGAAAACTTTCTGTTTGCTAACAAGAAGGAGAATTCGCCTCTTAAAGCCATCGATTTTGGCCTCTCTATTTTCTTCAAGCCAGGCGAGAAGTTCTCTGAAATAGTTGGAAGCCCTTATTACATGGCCCCAGAGGTGCTTAAGCGTAGTTATGGGCCAGAGATTGATATATGGAGTGCAGGAGTAATTCTTTACATTTTATTATGTGGTGTTCCTCCATTCTGGGCAGAATCTGAAACAGGTGTTGCACAGGCTATTCTTCGTGGGCAAATAGATTTNCAACGTGAACCATGGCCCAGTGTTTCTGAAGGTGCAAGAGTCTTGTACGCAGATGTAGGAGCAGATCAAAGCTCGACTACGGCTAGCAGTAC | |||||||||
gi|90445560|gb|DY907443.1|DY907443 CHAX2183.b1_M18.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX2183, mRN GCCTGGCTCCCTGTATGCCAT EST sequence (targeted fragment marked with yellow): ACACATTCCCTTTCCCCTTTCTCTCTCTCTCTTAGATGGAACCCTAGCTAATTGCTATCATGGGAAACTGCTGCAGATCTCCGGCGGCCGTCGCCAGGGAGGACGTCAAACCATCAAACAACGATCACAACTACAAGAAGGATAAGCCTGCCGTCACTGTTCTCAACGATGTATCAAAGGAGGAGAACATAGAGGATAAGTATATGGTGGACAGGGAGCTAGGGCGAGGTGAGTTCGGAGTTACATACCTCTGTATAGATCGGACCACCAGAGAATTACTAGCTTGCAAGTCCATCTCCAAGCGGAAGCTGCGAACAGCTGTGGATGTGGAGGATGTGCGCCGAGAAGTGGCCATCATGAAGCACTTGCCCCAGAATTCCAGTATTGTGACGTTGAGAGAGGCTTGTGAGGATGAGAATGCTGTGCATTTGGTCATGGAGTTGTGTGAGGGCGGGGAGCTCTTCGATCGGATCGTTGCCAGGGGGCATTATACAGAGCGTGCTGCTGCTAACGTTGCCAGGACTATGGTGGAGGTTGTGCAGCTGTGTCATAAGCATGGAGTTATTCATAGGGATTTGAAGCCTGAGAACTTTCTGTTTGCTAACAAGAAGGAGAATTCGCCTCTTAAAGCCATTGATTTTGGCCTCTCTATTTTCTTCAAGCCAGGCGAGAAGTTCTCTGAAATAGTTGGAAGCCCTTATTACATGGCCCCAGAGGTGCTTAAGCGTAGTTATGGGCCAGAGATTGATATATGGAGTGCAGGAGTAATTCTTTACATTTTATTATGTGGTGTTCCTCCATTCTGGGCAGAATCTGAACAAGGTGTTGCACAGGCTATTCTTCGTGGGCAAATAGATTTCAAACGTGAACCATGGCCCAGTGTTTCTGAAGGTGC | |||||||||
gi|22314566|gb|BQ915785.1|BQ915785 QHB15M08.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB15M08, mRNA sequenc GCCTGGCTCCCTGTATGCCAT EST sequence (targeted fragment marked with yellow): GAGGACGTCAAACCATCAAACAACGATCACAACTACAAGAAGGCCGTCACTGTTCTCAACGATGTATCCAAGGAGGAGAATATAGAGGATAAGTATATGGTGGACAGGGAGCTAGGGCGAGGTGAGTTCGGAGTTACATACCTCTGTATAGATCGGACCACCAGAGAATTACTAGCTTGCAAGTCCATCTCCAAGCGGAAGCTGCGAACAGCTGTGGATGTGGAGGATGTGCGCCGAGAGGTGGCCATCATGAAGCACTTGCCCCAGAATTCCAGTATTGTGACGTTGAGAGAGGCTTGTGAGGATGAGAATGCTGTGCATTTGGTCATGGAGTTGTGTGAGGGCGGGGAGCTCTTCGATCGGATCGTTGCCAGGGGGCATTATACCGAGCGTGCCGCTGCTAACGTTGCCAGGACTATGGTGGAGGTTGTGCAGCTGTGTCATAAGCATGGAGTTATTCATAGGGATTTGAAGCCTGAGAACTTTCTGTTTGCTAACAAGAAGGAGAATTCGCCTCTTAGAGCCATCGATTTTGGCCTCTCTATTTTCTTCAAGCCAGGCGAGAAGTTCTCTGAAATAGTTGGAAGCCCTTATTACATGGGCCCCAGAGGTGCTTTAAGCGTAGTTATGGACCAGAGATTGATATATGGAGTGCAG | |||||||||