| mature miRNA: GCGAGCTTCTCGAAGATGTCG species: Elaeis guineensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161974983|gb|EL683083.1|EL683083 OPYF02297 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone CMC_L419A.seq, GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): CCACTTTCGATCCGTTTCGCTTTCCAAACACNTAAATCTCCCAAGTCTCCCTTTCGGGNCGATCCCCAATGGCGCCCAAGGCTGACAAGAAACCCGCCGAGAAGAAGCCGGCGGAGGATAAGGAGAAGAAGGCGGTGGCGGAAAAGGCCCCCGCCGAGAAGAAGCCCAAGGCGGAGAAGCGCCTCCCGACCAAGGAGGGCGGCGCCGGCGACAAGAAGAAGAAGAAGAAGACGAAGAAGGGGACCGAGACCTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTCCACCCGGACATTGGGATCTCGAGCAAGGCCATGAGCATCATGAACTCCTTTATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCTTCCAAGCTTGCCCGTNCAACAAGAAGCCCACCATCACCTTCCGGGAGATCCAGACCTTCGTTCGCTT | |||||||||
gi|161976017|gb|EL686374.1|EL686374 OPMF02617 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W915.seq GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): GGCGCCCAAGGACGGAGAAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGAGAAGAAGGCGGCCGCCGAAAAGGCCCCCGCCGAGAAGAAGCCCAAGGCCGAGAAGCGTCTGCCGTCCAAGGAGGGAGCCGCCGGCGACAAGAAGAAGAAGAAGAAGGCGAAGAAGAGCACCGAGACGTACAAGATCTACATATTTAAGGTCCTGAAGCAGGTCCACCCTGACATCGGGATCTCGAGCAAGGCCATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCGTCCAAGCTTGACCGCTACAATAAGAAGCCTACAATTACCTCCCGGGAGATTCAGACCTCTGTCCGACTCGTCCTTCACGGTGAGCTTGCGAAGCACGCCGTCTCGGAGGGCACAAGGCCGTCCCAAGTTCACTAGCTCG | |||||||||
gi|191189105|gb|EY409411.1|EY409411 pOP-EO03530_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03530 5 GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): GGGCCGCCGGCGACAAGAAAAGGAAGAAGAAGGCGAAGAAGAGCAGCGAGACGTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTCCATCCGGACATCGGCATCTCCAGCAAGGCCATGGGCATCATGAACTCCTTCATCAACGACATCTTTGAGAAGCTTGCCCAGGAGGCGTCCCGCTTGGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACCTCCGTTCGCCTCGTCCTCCCTGGCGAGCTAGCTAAGCACGCCGTCTCGGAGGGTACCAAGGCCGTCACTAAGTTCACCAGTTCTTGAATGTTGAAATCAGGGATGGTTGGGGGTGGTGATACGATGTAACTTTTAGGGTTTTGATGCATTGCTGTTAGGGTTCTGCGTGATGACTTGTCAATTAGGCTTCTTGTAAATTGCTTTGCTTAATATCAGATGATGGTTTCTCGG | |||||||||
gi|161974436|gb|EL683060.1|EL683060 OPYF02269 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone CMC_L374.seq, m GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): CCCGAANCAGGTCCACCCGGACATCGTGATCTCCAGCAAGGCTATGGGCATCATGAATTCNTTCATNAACGATATCTTTGAGAAGCTCNNCAGGAAGCTTNTNGCTCGCCCGCTACAACANGAAGCCAACCATCACCTCCNGGAGATTNAGACTTCGTCGCTNNTCCTCCCGGCGAGCTCGCAAGACNCCGCTTCGAAGGACCAAGCCGCACAAATCCTAGTCTGATGANTTGGTGGCTTCTGCT | |||||||||
gi|161982584|gb|EL688107.1|EL688107 OPVM01737 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone OPN0XX_D23-10.seq, mRNA GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): GAGAAGAAGCCCGCGGAGGAGAAGGAGAAGAAGGCGGCCGCCGAAAAGGCCCCCGCCGAGAAGAAGCCCAAGGCCGAGAAGCGTCTGCCGTCCAAGGAGGGAGCCGCCGGCGACAAGAAGAAGAAGAAGAAGGCGAAGAAGAGCACCGAGACGTACAAGATCTACATATTTAAGGTCCTGAAGCAGGTCCACCCTGACATCGGGATCTCGAGCAAGGCCATGGGCATCATGGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCGTCCAAGCTTGCCCGCTACAATAAGAAGCCTACAATTACCTCCCGGGAGATTCAGACCTCTGTCCGCCTCGTCCTTCCCGGCGAGCTTGCGAAGCACGCCGTCTCGGAGGGCACCAAGGCCGTCACCAAGTTCACTAGCTCGTAGATCTAGATTTCGTTTTTGCCCTTTTTGCCTCGTTTCTGATGTTGTATAATTTCCAAGGGCTTCTGTNTTTTCTCTGATGTCTTATCTAATGCTGTAGAAATGAATCGTCTTTTAATGTTAATGGTAGTAGT | |||||||||
gi|191192829|gb|EY411659.1|EY411659 pOP-EO03351_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03351 5 GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): CGATCCGCAATTTGTTGATCCCCTTTCTCGTTTCGCACCCACCGTCCATCTCTGCCCACAAAACCTCTTCCTTGCTATCCGGATGGCGCCCAAGGCGGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGAGAAGAAGGCGGCCGCCGAAAAGGCCCCCGCCGAGAAGAAGCCCAAGGCCGAGAAGCGTCTGCCGTCCAAGGAGGGAGCCGCCGGCGACAAGAAGAAGAAGAAGAAGGCGAAGAAGAGCACCGAGACGTACAAGATCTACATATTTAAGGTCCTGAAGCAGGTCCACCCTGACATCGGGATCTCGAGCAAGGCCATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTC | |||||||||
gi|161983317|gb|EL685935.1|EL685935 OPMF02178 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W299.seq GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): GCAGAGGCGCTCTTTCGCTCGCTTCCCCAAAAGCCCTATTTCGATTTCCAATGGCGCCCGAGGCGGAGAAGAAGCCTGCGGAGAAGAAGGCGGTGGCGGAGAAGGCCCCCGCCGAGAAGAAGCCCAAGGCGGAGAAGCGTCTCCCGAGCAAGGAGGGCGGCGCGGGCGACAAGAAGAAGAAGAAGAAGGCGAAGAAGGGGAGCGAGACCTACAAGATCTACATCTTTAGAGTGTTGAAGCAGGTCCACCCGGACATCGGGATCTCGAGCAAGGCCATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCGCAGGAGGCTTCCAGGCTCGCTCGATACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCAGCTCTTAAGTTTGTGTTTCGGTGTTAGGGTTTCGGTTTGCTCGTTTTTAGGGTTTCTTGTTGACTGCTTTTTTTAAGGCCTGTATTTAGGGTTGGATGGGCGGTGGTGGGTC | |||||||||
gi|193220401|gb|DW248168.1|DW248168 pOP-EON00451_EST_C_1_pSK_SK EON (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EON0045 GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): GGGTTCTCATTCCTTTCGCGGGTATTCTCTTAGCCCTGAAACCTCTTTCGATCTCGATGGCGCCAAAGGCAGAGAAGAAGCCCGCGGAGAAGAAGCCAGCGGAGGACAAGGAGAAGAAGACGGTGGCCGAGAAGGCCCCCGCCGAGAAGAAGCCCAAGGCCGAGAAGCGGGTGCCGGCCAAGGAGGGGGCCGCTGGCGACAAGAAGAGGAAGAAGAAGGCTAAGAAGAGCAGCGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTCCACCCGGACATCGGGATCTCGAGCAAGGCCATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCCGTCTTGCCCGTTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACTAAGTTCACCAGTTCTTGAATCGTTGGGGCGGAGCGTGGCAGTCGTACGATGTAATTTCTAGGGTTTTGGAGCGTTGCTATTAGGTGTTCCGTCTTGGGACCCTCTAATTAGGCTTTCTGTAAATTGCGATGCTTTTTAATATTATGGTTTCTTGGG | |||||||||
gi|161983756|gb|EL685869.1|EL685869 OPMF02111 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone OPN6WK_W1078.se GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): CCCTTCGTCGATCTTGGCATCTCGTTCTGCGCTCGCCCTTGACCTCAGTTCTCTTGATAGCGATTCCGATGGCGCCCAAGGCTGAGAAGAAGCCGGCGGAGAAGAAGCCTGCCGCCGAGAAGTCGGCGGAGGACAAAGAGAAGAAGACGGTGGGCGAGAAAGCCCCTGCCGAGAAGAAACCCAAGGGCGAGAAGCGCCTTCCATCCAAAGAGGGGGCCGCCGGCGACAAGAAAAGGAAGAAGAAGGCGAAGAAGAGCAGCGAGACGTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTCCATCCGGACATCGGCATCTCCAGCAAGGCCATGGGCATCATGAACTCCTTCATCAACGACATCTTTGAGAAGCTCGCCCAGGAGGCGTCCCGCTTGGCCCGCTACAACAAGAAGCCGACCATCACCTCGCGGGAGATCCAGACCTCC | |||||||||
gi|191181968|gb|EY412696.1|EY412696 pOP-EO02091_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02091 5 GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): CGATCCGCAATTTGTTGATCCCCTTTCCCGTTTCGCACCCACCGTCCATCTCTGCCCACAAAACCTCTTCCTTGCTATCCGGATGGCGCCCAAGGCGGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGAGAAGAAGGCGGCCGCCGAAAAGGCCCCCGCCGAGAAGAAGCCCAAGGCCGAGAAGCGTCTGCCGTCCAAGGAGGGAGCCGCCGGCGACAAGAAGAAGAAGAAGAAGGCGAAGAAGAGCACCGAGACGTACAAGATCTACATATTTAAGGTCCTGAAGCAGGTCCACCCTGACATCGGGATCTCGAGCAAGGCCATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCGTCCAAGCTTGCCCGCTACAATAAGAAGCCTACAATTACCTCCCGGGAGATTCAGACCTCTGTCCGCCTCGTCCTTCCCGGCGAGCTTGCGAAGCACGCCGTCTCGGAGGGCACCAAGGCCGTCACCAAGTTCACTAGCTCGTAGATCTAGATTTCGTTTTTGCCCTTTTTGCCTCGTTTCTGATGTTGGATAATTTCCAAGGGCTTCTGTTTTTTCTCTGATGTCTTATCTAATGCTGGAGAAATGAATCGTCTTTTAATG | |||||||||
gi|309949863|gb|GT119587.1|GT119587 EG-M11_007_D08 InfSSHM1, normal male inflorescence Elaeis guineensis cDNA clone EG-M11_007_D GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): CGCGGGGGCGACAAGAAGAAGAAGAAAAAGGCGAAGAAGAGCAGCGAGACATATAAGATCTATATCTTTAAGGTCCTGAAGCAGGTCCACCCGGACATCGGGATCTCGAACAAGGCCATGGGCATCATGAACTCTTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCGTCCAGGCTTGCCCGCTACAACAAGAAGCCTACCATTACCTCCCGGGAGGTTCAGACCTCTGTCCGCCTGGTCCTCCCCGGCGAGCTTGCGAAGCACGCCGTCTCGGAGGGCACCAAGGCCGTCACCAAGTTCACTAGTTCTTGAATGATCTTGGATTTGGTTTGTGGGTGTTGTCTGAAGCTGATCTGAAAATTTAGGGTTGTGTTTGGACACTTGTTTGCTCCTTCTCTTTATCTCTTTCTCGTTATCTTTTATTTTGATATTTTTGTTGGAAGTTGGATAGTCTGATGTAAAATACCTATCTCTGATTCGGAAATCTAAAGATTAGATCTTCTTTGAG | |||||||||
gi|191195270|gb|EY399797.1|EY399797 pOP-CNH04508 CNH (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNH04508 GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): CTCACATCAGATCCAATTGATGAATATTACAAGGAAAAGAAATGGTACCCTGATAAGATGGGCGATCTTTCCGGCAGGATCTGCTGATTTTATTTCCAATACGACAGCAATGGGCATTATTTCTCGCTTAACCGAGCACCGTCTTCGTCTTCCTGAAAATTTTGGAAGTTATCAGTTGGTTGAGTGGAATGTTGAACCTCCATCAAGAAGAACATGGTGGCAACGACATTTGCTGGCCATAATTGTGGGGTTCTCTGTGGCTGTGTTGTTGAGTTTCTCAGCACTCTTGATATGGTATTTCTGGCGACATAAACTTGAAGGTCCGAGAACATACAGACCGGTGGATGCTGCTATTCCAGAACAAGAGCTCCAACCATTGTAAATTACAGCTACTGATTGAAGTAAACATCGTGGTGATTCTTTACCATCAATATTGTCATTAGAATAGCTCACATTATTATGCTGGAGCATGTTTCTGGCCCGAGTCTGGTTCAGCCTCCTTTGTAATACTAGCTCACATACAGCATGAATAAGAAGAGAGTGCCTCATTGTAAAGGGGTGCATGCGTGAGTGGAAAACCATTAGTGGTATAGATCAAGATCTGTCACCAGAACTGGTGATACAAACCATTTTAGTCTTGAATTGTTGTTCAAATTAAGAGTAAACAGAAACTGGCATTTTTGAGGAGCTCGTATGCTAGTTTGTGACAATT | |||||||||
gi|191207447|gb|EY412430.1|EY412430 pOP-EO06524_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO06524 5 GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): GGTTCCCCTTTTCCCTCTCCTAAAGACCAATCCCCCGCTCGCTCCTCCCCTCCTCGGACCCTCCCCTAACCTCGATTCCGATGGCACCCAAGGCCGAGAAGAAGCCGGCGGAGAAGAAGCCTGCTTCGGAGAAGCCGGGGGAGGACAAAGAGAAGAAGACGGTGGCCGAGAAGGCCCCTGCCGAGAAGAAGCCCAAGGCCGAGAAGCGCCTCCCATCGAAGGAGGGGGCCGCTGGCGACAAGAAGAAGAGGAAGAAAGCGAAGAAGAGCAGCGAGACGTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTCCACCCGGACATCGGGATCTCCAGCAAGGCTATGGGCATCATGAATTCCTTCATCAACGATATCTTTGAGAAGCTCGCCCAGGAGGCTTCTCGCCTCGCCCGCTACAACAAGAAGCCAACCATCACCTCCCGGGAGATTCAGACCTCCGTCCGCCTCGTCCTCCCCGGTGAGCTCGCCAAGCACGCCGTCTCCGAGGGTACCAAGGCCGTCACCAAGTTCACTAGTTCTTGAATGATCTTTGTTTGGGTCTGCTGGCTTCGTCTGGATCCTATCTGGGAATTTAGGGTTATGCTTGGGTGCTTCTTTGCCCCTTCTGCCTTC | |||||||||
gi|161975975|gb|EL681759.1|EL681759 OPYF00849 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 190-D11-T3.seq, GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): TGTATCGTGAAGTCCTTCGTCAACGACTTCTTCGAGAAGCTCGCCCAGGAGGCGTCCAAGCTTGCCCGCTACGATAAGAAGCCTACAATTACCTCCCGGGAGATTCAGACCTCTGTCCGCCTCGTCCTTCCCGGCTAGCTTGCTAAGCACGCT | |||||||||
gi|191183600|gb|EY409402.1|EY409402 pOP-EO02067_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02067 5 GCGAGCTTCTCGAAGATGTCG EST sequence (targeted fragment marked with yellow): CCTTTGTATCGTTTGCTAAGCCCCCGAAGTCCCCCAGATCTCCACGTACAAATCTCCCTTTCGATTTCGGTTTCCGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCCTCCGATAAACCGGCGGAGGAGAAGGAGAAGAAGGCGGTGGCGGAGAAAGCTCCGGCCGAGAAGAAGCCCAAGGCCGAGAAGCGTCTCCCCAAGGAAGGCGGTGCCGGCGACAAGAAGAAGAGGAAGAAGGCGAAGAAGGGGAGCGAGACCTACAAGATCTACATCTTCAAGGTCTTGAAGCAGGTCCACCCGGATATCGGCATCTCGAGCAAGGCCATGGGTATCATGAACTCCTTCATCAACGACATCTTCGAGAAACTCGCCCAAGAGGCTTCCCGTCTCGCCCGCTACAACAAGAAGCCGACCATCACCTCTCGGGAGATCCAGACGTCCGTCCGTCTCGTTCTCCCCGGCGAACTCGCGAAGCACGCCGTCTCCGAGGGCACTAAGGCTGTTACCAAGTTCACAAGTTCTTGATCCGTTCTAGGGATTCTTGGCCTCCGTGTGGTCGGATCTAGAAGTCTAGAGTTGTAATCTTGG | |||||||||