| mature miRNA: GCGGGCCCACATGTCAGCCAC species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|158965254|gb|EG402465.1|EG402465 BG01043A1C04.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GCGGGCCCACATGTCAGCCAC EST sequence (targeted fragment marked with yellow): CCCCCACCAACCCACGAGACCATGGCCGCGCCTACCGTCTCCAAGTCGCCGCCGGCGCTCGTCCCTCCGGCGGGGCCCACCCCGGGCGGCGTGCTCCCGCTCTCCTCCATCGACAAGACCGCCGCCGTCCGCGTCTCGGTCGACTTCATCCAGGTCTTCCCCCCGTCCTCCGACCGGGGCGGCGACGACCAGGTGGGCACGATGCGCCAAGGGTTCGCGAGGGCGCTGGTGCCCTACTATCCGGTGGCCGGTCGCATCGCGGAGCCCTCCCCGGGCGACCTCGTGGTGGACTGTACCGGCGAGGGTGTCTGGTTCGTGGAGGCCACGGCGAGCTGCTCGCTCGCCGACGTCAACGGCCTCGAGCGCCCGCTGCTCATCCCCAAGGGGGAGCTTATCCCCCGCCCTCCCCCCGAGGAGAAGCTCGAGGACCTCATCCTCATGGCGCAGGTCACGAAATTCACCTGCGGTGGATTCGCCGTGGGGATCTGCTTCAGCCACCTGGTGTTCGACGGGCAGGGCGCCGCGCAGTTCCTGAGGGCGGCGGGCGAGCTGGCCCGGGGGGTTCCCGGCGCCATCAGTGGCTCCCGTGTGGGACCGCGAAACGATCCCGGACCCACCCAAGCTGCCGCGCGGCCCGCCGCCGTCGTTCACGGCGTTCAGCTTCGTGACCCAGGTGGTCGAGATCTCGCCGGAGANNATCCTGCGCATCAAGGACGAGTTCAAGGCCGCCACCGGGGGGGAGACCTGC | |||||||||
gi|159737320|gb|EG380137.1|EG380137 BG01015A2G10.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GCGGGCCCACATGTCAGCCAC EST sequence (targeted fragment marked with yellow): GCGACGACGCCACGCCCAAGATCAAGAAGTTCGTCAATGCCATGGTGGGCGGCAAGCTCCCGCATGGCCCTGATCAGGCCGCCACGGTCACAGAGATGATCCCGAAGGCTAAGCCGGACGGCGGCCGAGGCGGGGATCTGGCGGACGCGCTCGGACCAGCCATGGAGCAGGAGGTGCGGAGCGTCGAGGAGGTGTACGCAGGTGCCGCGGCGAAGGTGTCGCCGCCACGCAACGGCGTCCTGATCAGCGGGTGCCAGACCGACGAGTCCTCGGCCGACTTGACCACGGCCAGCGGCGTGTCCTACGGCGCGCTCAGCAACGCCATCCAGGCGGTCCTCGCGGAGGAGAAGCGCGGGAAGGTGACCAACAGGGAACTCGTGCGAAGGGCGCGCGGGCTGCTGTCCAAGCAGGGGTACGTCCAGCAGCCTGGCCTCTACTGCAGTGACGAGCATGCTGATGTTGCCTTCATATGCTGATTGGTGCGACGAGCCTTCCCTGCAATACTGCAGAGGGACTCTGTGGCTGACATGTGGGCCCGCTAGCATGGTGGCCCACATGTCAGCTGCCCAAAGTCAGAGGGCAGTACTGCAGAGGATCCGGTTCCGATTGGTGACGCTTCACATCGGTCGTGCTGTGCCGTGTGTCGACTGACCGTGTTTTTGCGTGTCGATGNNNTGCGCCGTGTGCTAATTGTTTTTCTGTGATGTGGCAATGGTTCAATTTTAGGTTTCCCTCATATTTGGGCACCTTTG | |||||||||
gi|159769241|gb|EG399505.1|EG399505 BG01035A1B04.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GCGGGCCCACATGTCAGCCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTGAGCAGCAAAACACATTATTATGGGGAAAATCTTGGCCATGCGGGAGCTATTGTCTGTACACTCATTGCAACCATGAAACAAAAACGAACTAACGGACCCTAATTTTTTCCAATTGAAGGTAAAAGAGTTCATCAAATAGCTCTCTATGTTTTCACAAGGTAAATGTGCTTAAAAATCCCCCCTACTTTAGAGGAACCGGAGCCCCACGAAAGCCGGCTCCGCGGCGGTCCGGACGCTCAGGTGACATCCGGCCGGCCGTGCTGCGACGGGAGCGAATCCAAGCGTGAGCTCGAGCCCTAGTTCTTCATCCTCGTCCTCCTTTTCGACCTCCTCCGCGTGCTCTGCGGCCGACGAGTCTTCCCTGCAGTACTGCAGAGGGACTCTGTGGCTGACATGTGGGCCCGCTAGCATGGTGGCCCACATGTCAGCTGCCCACTCTGCGGCCGGCTCTGTGCTCTGCTCCTGCTCCGCCTGGCTGACGTGCGACCCCGCCTCGGCCTCCGTGTCCGCGGAAGCCTCTTGCTGGCAGTGTGGCTCCACGGGGTCCTCGTGTCGGCTGTCGGAGGATTCGTGGCTCGGGGCACGCTGGAACGCGCCCTCCTCCATCTCCTTGCGGTGTTGACGGTCCAGCTCCTCCTCTGCCGTGGGCGCCCGCGGCTTGGGCTTGTTGTTGGAGTCGCTGGACGGGTTGTGGTGGG | |||||||||
gi|159614876|gb|EG393324.1|EG393324 BG01042B2E12.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG GCGGGCCCACATGTCAGCCAC EST sequence (targeted fragment marked with yellow): CGATTTTTTCTTTTTTTTTTTGATAATAACTAGACACACAATCTTAGGCTTCTTCGCCAGATCAAGTCGCAATCCAACGTACAGGGTTACATGAAAGGCAACTAACAACGCAAAATCACAAGAGAGTAGGATTATTGCAATTGCAATCCCAGTGGCCAGTTGAGCAACAAGGGACAGTGGCGGAGACAGGGGGGGACCAGCAGGGGCCCTGGCCCCCCCTAACATAAGGATTTTACTGATATTTTGTTATGAACAGTGACATGATTAGTAATTTTTTGCTGCTGAAAATGTACTTTTCAATAGTTTGGCCCTCCCTAACTTGTTTTAGCAGCACTTGGCCCCCCTGATACTTATTTTCTGGCTCCGCCACTGACAAGGGACGACGACGCCTGCCACACATGAGCGAGGCGGATGCAGCTTCGCTGCACCTACCTTTGAGTGTGTGACATGTGGGCCAGCCACCTATTGGGCCCACATGTCATGCACACAAAGGCGAGGCATGCTACGACGCCGCCTCCTCCGGCTCCGGTGCTTTCCCATAGCCCAGCTCGGTCATCTCCCAGCTCGTCCGCGAGGCCACCTCCCGGTGTGAACGGGTGTATTGCTCCATCTTTGTCAGCAGTTTGTGGGCAGTTGGCGCCGACACGATTATCTGCCTGCAATCGGCCTTAATAAACCCTTCTGCCGCACCCTTGTCG | |||||||||