| mature miRNA: GCGTGCAAGGAGCCAAGCATG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|89198670|gb|CI016755.1|CI016755 CI016755 Oryza sativa (japonica cultivar-group) green shoot Oryza sativa Japonica Group cDNA GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): TTTGTTAAGAGTAAAGCGATGATATAAGCAAGACATGTTTCACTCTTTGCATGCGGCAATCGGTTTGTTCTTGGGTGGTGGTGGTGAAGCGGTACGACGCGTGGGAGAGCGTCGCGTTGTACCAGCTATGGTGGATCAGCTCCGCCTTGGCATCCTCCCCGGCGGCGCCGAGCGCGACGTGCAGCGGGAGGAAGTGGTCCGGCGACGGGTGCGCCATCTTACCGTTCGGCGCCTTCTCCTCGTACTGCTTCACGTCGTCGTGCCTCCCGCCCGCGAGGAGCGCCTCCTGCAGCCACCCGTCGAACTCCGCCGCCCACTGGGGCACCGGCGTGCCCTCGGCGACGGGCGCCATGCAGCTAAGGTTGTGCGTGGCGTTGCCGGAGCCGAGGATGAGGACGCCGTCGTCCCGGAGAGGCGCCAGCGCTCTGCCGAGATCGTAGTGGTACGCGCCGTCGCGGCCGGTCTGCAGGGAGAGCTGGCACACCGGCACGTACGCCTCCGGGTACATGA | |||||||||
gi|86259685|gb|CI065558.1|CI065558 CI065558 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CGAACACAAATTAAAAAACTAATTTCATAACTCGCCTGGAAACCGTGAAACGAATCTTTTGAGACTAATTAATCCACCATTAGCACATGTGGGTTACTGTAGCACTTATGGCTAATCATGGACTAATTAGGCTCAAAAGATTCGTCTCGTGATTTCCATCATAACTGTCCAATTAGTTTTTTTTATCTATATTTAATGCTCCATACATGTCTACAAGGATTCGATGTGATTTTTTTGAGAAAAACTTTTTGGGAACTAAACATGCCCTAAATGTTCAGTTTACTGTGAACAGGAACGCGAAAACGACCGCTACACTTCAACAACGTCAACCTCCGACAACTCAACGCTGGAGACACCATCGGGGCAGAGGATCGACAGCACGCTGACCGTCTTGTGCTGTGGAATCTGACTTATCTTGAGCCGATCTTCATCGCTCAATTGCCAATCGAAGATATCGATGTTCTCCTTAAGCCTCTCCCTTTTCGTACTCGTGGTCACCATGCTTGCTCCTTGCTCGTAGATCCACCTAAGTGAGATCTGAGCC | |||||||||
gi|109711595|gb|CI013200.1|CI013200 CI013200 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): TTGAATATCAACGCCATGAGAGGCTGGGCCACAACCCAAACCACCATGCATGCAAGTTTATTGCAACTGAAAACCACAAGACACGGCCGTTAGGAAATACAGGCACGAACGTACGTCTACGTTAATAGGAGTATATTAACGTAGATCCCACGGAGATTATTAATTGTTAAGAGTAAAATGGCGATGATATAAGCAAGACATGTTTCACTCTTTGCATGCGGCAATCGGTTTGTTCTTGGTGGTGGTGGTGAAGCGGTACGACGCGTGGGAGAGCGTCGCGTTGTACCAGCTATGGTGGATCAGCTCCGCCTTGGCATCCTCCCCGGCGGCGCCGAGCGCGACGTGCAGCGGGAGGAAGTGGTCCGGCGACGGGTGCGCCATCTTACCGTTCGGCGCCTTCTCCTCGTACTGCTTCACGTCGTCGTGCCTCCCGCCCGCGAGGAGCGCCTCCTGCAGCCACCCGTCGAACTCCGCCGCCCACTGGGGCACCGGCGTGCCCTCGGCGACGGGCGCCATGCAGCTAAGGTTGTGCGTGGCGTTGCCGGAGCCGAGGATGAGGACGCCGTCGTCCCGG | |||||||||
gi|40491502|gb|BX901547.1|BX901547 BX901547 Oryza sativa library (Han B) Oryza sativa cDNA clone p659f03p3, mRNA sequence GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CGGTCATACCTAATGGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTCGCAGTCAGCACTACCATGCATCAGAAAAAGGTGGCAAACAGTACATGAAACAAACTAGCTAGGCTGTCAATAATTTTTTTCAGAGAAGTTGCTCACCAAGTGACTGCATGCAGATGTGTAATCAACCAGAGAACTATTAGTACACACTATATACACAGGTTTGCTCACTTACCGCAAATCATGACAGCGTCACACACAAGCGAAAAATAAAATGCATGCAATATGTATTAAGCATAACTACTCATCAAACTAATAAGAAACCATAACCAAGCGCATAACTAATTAAAAGAGACTACTGGTAATAAGAACTAATAAGACTACTAAAACTGCAGTATAAACTACCGTATGATCCAGGTTTATCAGGTTTAATTAAGCGTGTAATCTTAAGTGAGCACACACAATGAGTCAATGAGAGAGAGATAGAGACAGAGAGAGACGGTCATGCTTGGCTCCTCGCACGCCATCCGCAGTAGAGCCAAACGTACGAACACAATGCCTGAATCTCCGCCGGGAGAAGGCAGCTGTTCCACTGAATTAGGCAGTACGCAAGGGAATCCGGCACCAGGAATCCCTTTATCCCCCCCTTTGTTTCAATTCCAACCTCTGGACCGGCAAGGGGCGATCGGGACACCAGGGGGTCGAAAAAAAAGGGCATCGGCGGGACCCACCAGGCCGGGAAATGGCCCAAGAAACACATGGGCCACAAAGAAACAAAGCACGGGGACACGACCCAAGAA | |||||||||
gi|88464858|gb|CI512163.1|CI512163 CI512163 Oryza sativa (japonica cultivar-group) 4 nuclei stage pistil Oryza sativa Japonica G GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CGACACGAGCATTATTTTGATTAAGTAGTCCAAATACTAGTACAAGACAAGGTCAGCAGCAGCGCAATAGCAGCCACGACCAGGCAGCAAATAGCTGCAGCAGATCACCGCACAAGACAAGAAATGGAGTAACTACAGCAGCCACGTCTAGTACTCCAACCTGCAGTAGGACAGGAGGAATACGATCCTACCACCGCTTGTTGCTCACATCGCCAAGCCGCCGCCGCATGCTGCTCGCATCTCACGCCTTGGAGCCGACCCCGCCGCCACCTGGTTGGCTCCTGGCACGCCGGCTCGGGCCTACCCCCGCCGCCGNTTGCTTGCCCTTGCTGCGCACCAA | |||||||||
gi|29663413|gb|CB659688.1|CB659688 OSJNEc16O04.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc16O04 5', mRNA sequence GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CTGGATTTGCACTTGGAAAGGAAGGACCCATGGTACATACAGGAGCATGCATAGCCAACTTGCTTGGTCAGGGGGGTTCACGCAAATACCATCTTACATGGAATTGGCTGAGATATTTTAAGAACGACAGGGATAGGCGAGATTTGATTACTTGTGGATCAGCAGCTGGAGTTGCAGCAGCATTTCGTGCACCAGTTGGTGGTGTGCTCTTTGCTCTTGAGGAAGCAGCATCATGGTGGCGAAGTGCTCTTCTATGGAGAACATTCTTTACAACTGCTGTTGTTGCTGTTGTGTTGAGGGGCCTTATCGAGTTCTGTCGTAGTGGAAAATGCGGTCTCTTTGGGCAAGGAGGGTTGATTATGTTTGATCTAAGTTCAACCATCCCGACATACACTGCCCAAGATGTTGTGGCAATAATAGTCCTTGGAATAATTGGCGGTGTTTTTGGAGGCCTTTTCAATTTTCTCTTGGATAGGATTCTCCGTGCCTACAGTATTATTAATGAGAGAGGCCCTCCATTCAAGATCCTTCTCACCATGATAATATCAATCATCACCTCAGCATGCTCCTATGGGCTCCCATGGCTTGCTCCTTGCACGCCGTGCCCTGCTGATGCTGCGGAGGAATGCCCCACCATTGGCCGGTCCGGAAACTTTAAGAACTTTCAGTGCCCACCGGGCCATTACAACGGCCTCGCGTCGCTCTTCTTCAACACAAACGATGATGCCATCCGCAACCTGTTCAGCAGTGGCACCGAGAAAGAGTTCCATATGTCCACCCTGTTCGTCTTCTTCACCGCCATCTACTGCCTTGGCCTCGTCACCTACGGTATCGCCGTTCCATCTGGT | |||||||||
gi|87005711|gb|CI316130.1|CI316130 CI316130 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CATCATCTGCCCTTTCAAGTATGTTGACGGTATAAGCTCGAACCTCCTCACTTTCAAAGTCTGGTGAGAGAAGCTCTAATGCATCAGCCAAATCAATTGTTTCCCATTTTCTAATCAATTCAACAGCTTGTTTAGTTTCTTGGATATCGCTCCAGTCCACTGCACGAACAAACTTTGTAAGAGCTTTCTTCTCAGACATCAAAGAGAACCGAAATTTCCAGAACAGCTGCTTCTCATCCACTTGTAAAGAGCGTGTAGGAGGAAACTTGATAATTCTTTGCAGACACTTTCGCTCATTTGAGCTTGGTTTAGATATTTATCAATTATTCCACGAGTTAGGCTCCTTGCACGCTTTAACTGTTTGTGCTCAGATGGATTGGTTCTTCCTACTTCAGGGTCCCATACAGTAACAAGTTGATTTGATAACAACACAGGGGCCTGGTGCATACAAATTTGCTCCAGATTCCTGGAAGACAACTTTGTGTTCAAAAT | |||||||||
gi|88761597|gb|CI771153.1|CI771153 CI771153 Oryza sativa (japonica cultivar-group) root of seedling 50ppm CuSO4 for 3days Oryza GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): GAAGTCTCGACTGACGGCCCTACGTACCAACCACTTACGTCCGGCCTCTCTTTTATTTTTGCTCCCCCCACGACGTCACACCCCACATCACACCTCCCTCACCTAACCTCCAACTACCCTTTGACAATACTCACAGCCTCATATCTCTCGGGGATAAAAAGGTTATTGTCATTTCTCTTTTTCTATCTACGTCACAGTCTTGCTCTCTCGCAGACGTGATCCCACTCCCTAGCTCAGGAAGAAAAGACCTTGGTGCCGACAACCCTCAGCAACCAGGTCACAAAGAAAAGGACTGAAACACGTTCCTTGCACTCTTCGCTCCTTGCGCGCAATCGATATCAACGACGACCGGAACGAAGCGATACCCGCCGAATACCGTCATCGTCACCCTCGAATCGT | |||||||||
gi|218482211|gb|FG951804.1|FG951804 MA_93-11_08699 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s GCGTGCAAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CTATAATATATCGATCCCACAAATTACAAAAGATCACACTGGTTGAGTCGGGACTCAAAAGGAACAGATATCAGAAAATCCACAGCATAAGTATTCTAAACAAGCCTCGGTACATGTGTGAAGTGTACTAGAAGTAACATACTGATCCCAAATTGGACATCCTAAAAAAAATACCAAGGATACGGGGATGCAGAGGTACGCCGCCGGAGCCGGACGCCCGGGCACCGGAGGGAAGCGACAGTGGCCGTACGATCACGCGGCCGATGGCGCCGTGACGTACTTGACGGTGCGGGCCTCCGCCAGCGCGGCGCGCAGCGGCTTCTTGGCCGCCGCCTCGACCTCGTCGGCGTCGTCGGCGGCCGCGATGGGCGGGAGGCCCTTGAAGTCCAGGCTGCCGTCGTAGTAGACGTCCCACCACTTCTTGACCAGCATCTTGATGTCCTCCCTGTCCATGTTCGCCTCCTTGCGCGTGTACCTCCACGGCTTCGATCCCGCTGCGCAGTAGTGCGCGACCTTGACCTTCTCGAGCTGGACGTTCTCTGGATGCC | |||||||||