| mature miRNA: GCGTGCGAGGAGCCAAGCATG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88345596|gb|CI629857.1|CI629857 CI629857 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): GAACGCGCGGGCCGCGATCGTGCGAGGGGCACTTGCATTTCCCCGCGAGATTTTTACGATGAAGACCGCATCGTCGTCGTCGTCGTCGTCGCACGGGTTCCCGGCCACCGCCTCGCTCTGCACCCCGTATCTCCTGCTGGTGCCGCTCGGCCTCCTCGCCGTGGTGCTCGTCGTCCCCAGACTTGGCTCCTCCCACGTCCGCTCCGANGGCCTCGGCGTCCTCTGCCACGCCGGCCCATCCACCGCCGACGGCTACCTCGTCACGCCGGGTGGAGATGCAGCTTCCGCTGCTGCTGCTGCTGCTGAGACGAAGGCCGTCGTGCGGCCGGAGCTCCGTCTGCTGGTGGGGGTGATGACGACGCCGAAGCGGTACGAGCGTCGCAACATCGT | |||||||||
gi|40491502|gb|BX901547.1|BX901547 BX901547 Oryza sativa library (Han B) Oryza sativa cDNA clone p659f03p3, mRNA sequence GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CGGTCATACCTAATGGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTCGCAGTCAGCACTACCATGCATCAGAAAAAGGTGGCAAACAGTACATGAAACAAACTAGCTAGGCTGTCAATAATTTTTTTCAGAGAAGTTGCTCACCAAGTGACTGCATGCAGATGTGTAATCAACCAGAGAACTATTAGTACACACTATATACACAGGTTTGCTCACTTACCGCAAATCATGACAGCGTCACACACAAGCGAAAAATAAAATGCATGCAATATGTATTAAGCATAACTACTCATCAAACTAATAAGAAACCATAACCAAGCGCATAACTAATTAAAAGAGACTACTGGTAATAAGAACTAATAAGACTACTAAAACTGCAGTATAAACTACCGTATGATCCAGGTTTATCAGGTTTAATTAAGCGTGTAATCTTAAGTGAGCACACACAATGAGTCAATGAGAGAGAGATAGAGACAGAGAGAGACGGTCATGCTTGGCTCCTCGCACGCCATCCGCAGTAGAGCCAAACGTACGAACACAATGCCTGAATCTCCGCCGGGAGAAGGCAGCTGTTCCACTGAATTAGGCAGTACGCAAGGGAATCCGGCACCAGGAATCCCTTTATCCCCCCCTTTGTTTCAATTCCAACCTCTGGACCGGCAAGGGGCGATCGGGACACCAGGGGGTCGAAAAAAAAGGGCATCGGCGGGACCCACCAGGCCGGGAAATGGCCCAAGAAACACATGGGCCACAAAGAAACAAAGCACGGGGACACGACCCAAGAA | |||||||||
gi|86506889|gb|CI149522.1|CI149522 CI149522 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTACTGCCAACCACACACCCACTCTATTAGTACAGGGGCGAACATACGGGTACATAAACAGTCTGCCAAACAGCCAAAGTTCAGACAGTAGCACAGAGTAAATGCACTACTGTTCCAAACGTAGCGGCATTATCCACACCAACACACACAGGGATGCATCTCGCATAGTCATCACGCCAGCACACGCTATCACGCACGCGTGGCGCACATGATGTACGAAGAGCGAGGTCGATATCGATATGATCTAGCCGACCTTGGTGAAGCGGAGGTAGCCCTTGCCGGACGGCAGGTCGGCGGTGTCGAACCCCTGGGGGAACTTCTCCTTCGCCTCGTCGTCGGAGACGCCGGGAGGGATGACGACGCGCTCGCCGGGCTTCCAGTTCACCGGCGTCGCCACCGCGTGCTTCGCCGCCGTCTGCAGCGCGTCGACCGCACGCACCACCTCATCCATGTTCCGCTCCACGCACGCCGGGTACCGGAAGCTCAGCTTCACCTTCTTGTCGGGGCCGACGATGTGCAGCGCGCGGGACGGGAGGTGGCCGC | |||||||||
gi|87005711|gb|CI316130.1|CI316130 CI316130 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CATCATCTGCCCTTTCAAGTATGTTGACGGTATAAGCTCGAACCTCCTCACTTTCAAAGTCTGGTGAGAGAAGCTCTAATGCATCAGCCAAATCAATTGTTTCCCATTTTCTAATCAATTCAACAGCTTGTTTAGTTTCTTGGATATCGCTCCAGTCCACTGCACGAACAAACTTTGTAAGAGCTTTCTTCTCAGACATCAAAGAGAACCGAAATTTCCAGAACAGCTGCTTCTCATCCACTTGTAAAGAGCGTGTAGGAGGAAACTTGATAATTCTTTGCAGACACTTTCGCTCATTTGAGCTTGGTTTAGATATTTATCAATTATTCCACGAGTTAGGCTCCTTGCACGCTTTAACTGTTTGTGCTCAGATGGATTGGTTCTTCCTACTTCAGGGTCCCATACAGTAACAAGTTGATTTGATAACAACACAGGGGCCTGGTGCATACAAATTTGCTCCAGATTCCTGGAAGACAACTTTGTGTTCAAAAT | |||||||||
gi|88342546|gb|CI637122.1|CI637122 CI637122 Oryza sativa (japonica cultivar-group) 11 days after transferring callus Oryza sativ GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): GGGGGCTTCGCCTCTTTGGCTCCTCGCCCGCCGGCGGCGGCGGCGATCGAGTTCCGCCGAGTCCACCACCACTCCGCGCCGCTAGCTACCCACTTGTTCCACCGACCACATCGCGCGCCCACCTACGAACTCCGCCCGCCGGCATCGATGGGGGCTTCGACGAACGCCCGCGAGCGCGCCATCGCTGGCCGCAGTACGATCCGCACGCCGGAGAAGCGTTCTTCAGTTGCCAGTTCGTGCAGATCTGTCTCTCAGGCAAGCTAGATTTATGCAGCATGTTGATCCAGATTATTACAGGAGAAACTTCCACATTCCTGAAGTCATGGTACAATTGGTATTTGGATGGAAGATAAGGAAATGTGATGGCACTCAATGCTGAGAAGAAACTTTTTTTTCAGGATCTCGTAGTGG | |||||||||
gi|33674854|gb|CF303093.1|CF303093 ABF1--01-F04.g1 ABF3-overexpressing transgenic rice lambda phage cDNA library (ABF1) Oryza sa GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): GCACGAGGCCTAAAGTGAAGCTTCTATGGAAGGGTGCTGAATTCTGGAAAGAGTGTATGGATCTGCTGCGTTGCGCGGAGCAAGCGAATGGAGCCGCTGGGGCAGATGGAGCTAGCCAAGATGAGACCCTTATCTGGAGAAGGGGAATTATACGGCCGCCTACAAGCGAGAAAACTGCTGACATATTGCTGGAGGTACTGCTGAATTAAGATTGTGCTGATATGCTCAGGTGCTTCCTTTTTTGTTTCTGGTGTACGATCTTGACTGCTTCGACCTATCCAAGTTAGAATGCTCAGAGTTCCCTCCAGAGTTGCAGCCTTCAAGTTCTTGATTCAGACGAGGCACAGTGTCTGATCCCTGGGTTATGTGTTCCGTTGAACTTTGCAGTTTACATGCCATTAGCGCTGAACATCAACCCTAAGAAATATTTACAGGCTTTGTTCTTCGCATGCCAAAATATGTCTGATGAAGCATCATTATCATCCAGCGAACAGAAAGAGTGCAAGCTGTACAACGAACACGTCGATGATCTACAGCAATTGGCAGGTGATTATGATTCAGTAATTATCTGCCTTGGTGCTAGAGCTAGCTCACTTCCAGAACTCACAAATAAGCTACCTCTT | |||||||||
gi|88464858|gb|CI512163.1|CI512163 CI512163 Oryza sativa (japonica cultivar-group) 4 nuclei stage pistil Oryza sativa Japonica G GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CGACACGAGCATTATTTTGATTAAGTAGTCCAAATACTAGTACAAGACAAGGTCAGCAGCAGCGCAATAGCAGCCACGACCAGGCAGCAAATAGCTGCAGCAGATCACCGCACAAGACAAGAAATGGAGTAACTACAGCAGCCACGTCTAGTACTCCAACCTGCAGTAGGACAGGAGGAATACGATCCTACCACCGCTTGTTGCTCACATCGCCAAGCCGCCGCCGCATGCTGCTCGCATCTCACGCCTTGGAGCCGACCCCGCCGCCACCTGGTTGGCTCCTGGCACGCCGGCTCGGGCCTACCCCCGCCGCCGNTTGCTTGCCCTTGCTGCGCACCAA | |||||||||
gi|58656306|gb|CK044986.1|CK044986 48532rsiceh_18333.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): GCACGAGGGAAAAAATCGAAAAACCCCTCGAAAAACGGCGAAACGGGTGGAGAGAGTGGAGGAGAGAAAGAGGGAGCTCAAAAGATGAGGCCTTCGAAGAAGAAATCGAAGAAGAAGAAGCCCTCGCCGGCGGCGGCGGCCGGCGCGGCGGCGCCGACGACCCCTCCGGCGGCGGCGGATGGGGGAGCGGGGGGCGAGTCGTGCTCGCCGCGGTCGGAAACCCTAACCCTAGCTGCTGCGGCGGCGGCGGCGGTGGCGTCGGAGACGGAGTCGAGCAGCAGCTGCGAGGCGTCCACGTGCTCGTCGTCGTCGTCGGCGTTCAACCCCGGGTCGTCTGGGGCGGCCTCGACCTCCTCCCTCTCCGCCTTCTCGTCGTCGGCCTCCACCGCGTCGTCGTCGGCCGCCGGCGACGAGCGGCGCGACATGGCGTGGCTGCTGGACGCCTTCGGCACCGCCACGATCGACCAGGTGGACTCCGCCTACCGCGAGGCCGGCGGCGACGCCTTCCTCGCGGCCGGCATCCTTGGCTCCTCGCCCGAAACG | |||||||||
gi|88392677|gb|CI602268.1|CI602268 CI602268 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): GGCGGGGGCTTCGCCTCTTTGGCTCCTCGCCCGCCGGCGGCGGCGGCGATCGAGTTCCGCCGAGTCCACCACCACTCCGCGCCGCTAGCTACCCACTTGTTCCACCGACCACATCGCGCGCCCACCTACGAACTCCGCCCGCCGGCATCGATGGGGGTTTCGACGAACGCCCGCGAGCGCGCCATCGCTGGCCGCAGTACGATCCGCACGCCGGAGAAGCGTTCTTCAGTTGCCAGTTCGTGCAGATCTGTCTCTCAGGCAAGCTAGATTTATGCAGCATGTTGATCCAGATTATTACAGGAGAAACTTCCACATTCCTGAAGTCATGGTACAATTGGTATTTGGATGGAAGATAAGGAAATGTGATGGCACTCAATGCTGAGAAGAAACTTTTTTTTCATGCGATGGACTGGTTGGCCTTGG | |||||||||
gi|66919055|gb|CX105903.1|CX105903 BI121D13 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CGAAAAACCCTCGAAAAACGGCGAAACGGGTGGAGAGAGTGGAGGAGAGAAAGAGGGAGCTCAAAAGATGAGGCCTTCGAAGAAGAAATCGAAGAAGAAGAAGCCCTCGCCGGCGGCGGCGGCCGGCGCGGCGGCGCCGACGACCCCTCCGGCGGCGGCGGATGGGGGAGCGGGGGGCGAGTCGTGCTCGCCGCGGTCGGAAACCCTAACCCTAGCTGCTGCGGCGGCGGCGGCGGCGGTGGCGTCGGAGACGGAGTCGAGCAGCAGCTGCGAGGCGTCCACGTGCTCGTCGTCGTCGTCGGCTTTCAACCCCGGGTCGTCGGGGGCGGCCTCGACCTCCTCCCTCTCCGCCTTCTCGTCGTCGGCCTCCACCGCGTCGTCGTCGGCCGCCGGCGACGAGCGGCGCGACATGGCGTGGCTGCTGGACGCCTTCGGCACCGCCACGATCGACCAGGTGGACTCCGCCTACCGCGAGGCCGGCGGCGACGCCTTCCTCGCGGGCGGCATCCTTGGCTCCTCGCCCGAAACGCAGNCCTCCCCGCCACCCCGGGCCCCGGATCTCTCGGCGCGGGGCGGATCTGGTG | |||||||||
gi|29663413|gb|CB659688.1|CB659688 OSJNEc16O04.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc16O04 5', mRNA sequence GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): CTGGATTTGCACTTGGAAAGGAAGGACCCATGGTACATACAGGAGCATGCATAGCCAACTTGCTTGGTCAGGGGGGTTCACGCAAATACCATCTTACATGGAATTGGCTGAGATATTTTAAGAACGACAGGGATAGGCGAGATTTGATTACTTGTGGATCAGCAGCTGGAGTTGCAGCAGCATTTCGTGCACCAGTTGGTGGTGTGCTCTTTGCTCTTGAGGAAGCAGCATCATGGTGGCGAAGTGCTCTTCTATGGAGAACATTCTTTACAACTGCTGTTGTTGCTGTTGTGTTGAGGGGCCTTATCGAGTTCTGTCGTAGTGGAAAATGCGGTCTCTTTGGGCAAGGAGGGTTGATTATGTTTGATCTAAGTTCAACCATCCCGACATACACTGCCCAAGATGTTGTGGCAATAATAGTCCTTGGAATAATTGGCGGTGTTTTTGGAGGCCTTTTCAATTTTCTCTTGGATAGGATTCTCCGTGCCTACAGTATTATTAATGAGAGAGGCCCTCCATTCAAGATCCTTCTCACCATGATAATATCAATCATCACCTCAGCATGCTCCTATGGGCTCCCATGGCTTGCTCCTTGCACGCCGTGCCCTGCTGATGCTGCGGAGGAATGCCCCACCATTGGCCGGTCCGGAAACTTTAAGAACTTTCAGTGCCCACCGGGCCATTACAACGGCCTCGCGTCGCTCTTCTTCAACACAAACGATGATGCCATCCGCAACCTGTTCAGCAGTGGCACCGAGAAAGAGTTCCATATGTCCACCCTGTTCGTCTTCTTCACCGCCATCTACTGCCTTGGCCTCGTCACCTACGGTATCGCCGTTCCATCTGGT | |||||||||
gi|58652618|gb|CK041298.1|CK041298 42542rsiceh_0561.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): GCACGAGGCGGAGACGGAGTCGAGCAGCAGCTGCGAGGCGTCCACGTGCTCGTCGTCGTCGTCGGCGTTCAACCCCGGGTCGTCTGGGGCGGCCTCGACCTCCTCCCTCTCCGCCTTCTCGTCGTCGGCCTCCACCGCGTCGTCGTCGGCCGCCGGCGACGAGCGGCGCGACATGGCGTGGCTGCTGGACGCCTTCGGCACCGCCACGATCGACCAGGTGGACTCCGCCTACCGCGAGGCCGGCGGCGACGCCTTCCTCGCGGCCGGCATCCTTGGCTCCTCGCCCGAAACGCAGCCCTCCCCGCCACCCCGGCCCCCGGATCTCTCGCCGAGGGCCGGATCTGGTGGCAGGAAGGCCAGCAGGAGGCCGAAGAAGGTAGCCGTGGCTGCGACCGGGATGGTTGCGGACGTGATCGGTAAGGGGTACACGCGAACTGCCACTTCGCCCGTAAACAAAACGAACGCGTGGAAGGGCAACGCTTGGAAGGACGGAAGTGGTGGCGACCGCAAGTATAGTGTTGAAGAGGCCG | |||||||||
gi|88574628|gb|CI666397.1|CI666397 CI666397 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte GCGTGCGAGGAGCCAAGCATG EST sequence (targeted fragment marked with yellow): GCCTCTTTGGCTCCTCGCCCGCCGGCGGCGGCGGCGATCGAGTTCCGCCGAGTCCACCACCACTCCGCGCCGCTAGCTACCCACTTGTTCCACCGACCACATCGCGCGCCCACCTACGAACTCCGCCCGCCGGCATCGATGGGGGCTTCGACGAACGCCCGCGAGCGCGCCATCGCTGGCCGCAGTACGATCCGCACGCCGGAGAAGCGTTCTTCAGTTGCCAGTTCGTGCAGATCTGTCTCTCAGGCAAGCTAGATTTATGCAGCATGTTGATCCAGATTATTACAGGAGAAACTTCCACATTCCTGAAGTCATGGTACAATTGGTATTTGGATGGAAGATAAGGAAATGTGATGGCACTCAATGCTGAGAAGAAACTTTTTTTTCACAGGGATCTCGTAG | |||||||||