miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GCGTGTGTATTGTGCTGGTA
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|38585879|gb|CK101554.1|CK101554 F098P96.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F098P96 5', mRNA seque

GCGTGTGTATTGTGCTGGTA
.|||||| |||.|.||||.|
TGCACACCTAATATGACCGT

EST sequence (targeted fragment marked with yellow):
TGCCAGTATAATCCACACGTATTCCAAGCAGCTAAGATGTACATTCTAAACGATTAAAAAAGAAGAAAGACGCTTACAGCAATGGCCACCAAGCCAGGCATTCTTGGACAACCATGTGGCGAAAAACATTTGACTCTGGACCTCAAATTCCAGGCCACTTATTCAGGCGCAA