| mature miRNA: GCTCACCGGCGCGCGCGTGCG species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|49454962|gb|CO373647.1|CO373647 MJR018A11 Methyl jasmonate-treated root Lambda ZIPLOX Library (MJR) Saccharum hybrid cultivar GCTCACCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GTCGACCCACGCGTCCGAGGTGATTCGCACCATTGCCGAACAAACCAACCTGCTCGCCCTGAACGCGGCGATTGAAGCGGCGCGCGCCGGTGAGCAGGGGCGCGGGTTTGAGAAAGAAAAAAAAAAA | |||||||||
gi|268791078|gb|DV638234.1|DV638234 SUR01-145-H05-A-044.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SU GCTCACCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CACGCAACCTCCTCTTCTCCTCCACATATCCAGGATCGCCGGTCTCCTAGAGACCTTGGCTCGCGGTTACCCCGCGCGCCGCCGGTGAGCTACGTTTGTTTCGATTTACCGGGAAATCCCGTTTGCTTCATGTTGTTGCGCAGGCTCAGATCTGATTGCTATTTTCGGCGTCTACGGCTTGAATCGAGCTGGGAGCGTGTGGATCTGATCACGGGGGATACAACAAACCCGCGTGCATGAAGCCTTGGATCCGGCACCGATCTGGCGAAATGGCGACGTTAATGGTGGTTCCGTTCGGAGCGGGGCTATGGCGACGATGGCTGAAGGCGGCGGCGGCGGCGGCGGGATCAATTGTCCTGCTCCACCTCGCGGGATGATGTCTCTGCGCTGATAATTATTGGATGAATTTCGATAATTAT | |||||||||
gi|35978444|gb|CA270748.1|CA270748 SCRULB2063B04.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCRULB2063B04 5', mRNA seq GCTCACCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CCCGAGCAACGCCGTCTATAGAGCATCCCGCCCGCCCGCCGGTGAGCATCGAGGGCAATTCGTCTTCAGCTGGTCGGCGTCCCGCTCCCGCCCGCCAACCCCAATTGCTCCCCTCCCGGAGGTCAGCTCAATTCCTGCTGTTTCTCGGATTCGATTCTGTTCCGCCGGGCGCGTCATCTCCCTCGCCGGAGATCCAGCAGGTACGAGCTCGCCGGAGCTCAGCGAGGCCGGGGATCATGCCTCCATTGCTCTAGGGTTTGGGCGGGTAATCCAATTGGCTCGCCAGGCCCGCGGCCTCTATGCTCGATTCGGTCCTTACGCGCCGCTCCCTGGGCGGCTCCTTGATCTCGCGGCGGTTGGTGCTGCGCCAGCGGATATGAGATCCCCTCCATGGCCGGCGAGCTGGGAATTCGGGTACGGTGTCGCGCTCTGTATGAAGAGGCGCAAGCCCTAATGGCTTGATCCTAGCTGGGTGCGGCGTGCTATCCCCAATTCGCTGGTTTCTCTACTCCGGGTCTGATATTGGGGTTTGCTGCGGGGGTAACTGCATGGACACAGTAAGGGAGGAAGCATTGCCATTGGCTGCACCGCAGCAGCGG | |||||||||
gi|268804898|gb|CN607197.1|CN607197 SUL01-011F-A06-037.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo GCTCACCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CGTTCCCCTCCTGCACGCAACCTCCTCTTCTCCTCCATATCCAGGATCGCCGGTCTCCTTGAGACCTTGGCTCATGGTTACCCCGCGCGCCGCCGGTGAGCTGCGTTTGTTTCGATTTACCAGGAAATCCCGTTTGCTTCATGTTGTTGCGCAGGCTCAGATCTGATTGCTATTTTCGGCGTCTACGGCTTGAATCGAGCTGGGAGCGTGTGGATCTGAGCACGGGGGATACAACAAACCCGCGTGCATGAAGCCTTGGATCCGGCACCGATCTGGCGAAATGGCGACGTTAATGGTGGTTCCGTTCGGAGCGGGGCTATGACGACGATGGCTGAAGGCGGCGGCGGCGGCGGGATCAATTGGCCTGCTCCACCTCGCGGGATGATGTCTCTGCGCTGATAATTATTGGATG | |||||||||
gi|268804479|gb|CN606778.1|CN606778 SUL01-006F-C03-018.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo GCTCACCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): AACCAACAAACCATTGTTCGACGCGTTCCCCTCCTGCACGCAACCTCCTCTTCTCCTCCATATCCAGGATCGCCGGTCTCCTTGAGACCTTGGCTCGCGGTTACCACGCGCGCCGCCGGTGAGCTACGTTTGTTTCGATTTGCCGGGAAATCCCGTTTGCTTCATGTTGTTGCGCAGGCTCAGATCTGATTGCTATGTTCGGCGTCTACGGCTTGAATCGAGCTGGGAGCGTGTGGATCTGAGCACGGGGGATACAACAAACCCGCGTGCATGAAGCCTTGGATCCGGCACCGATCTGGCGAAATGGCGACGTTAATGGTAGTTCCTTTCGGAGCGGGGCTATGGCGACGATGGCTGAAGGCGGCGGCGGCGGGATCAATTGGCCTGCTCCACCTCGCGGGATGATGTCTCTG | |||||||||
gi|35980881|gb|CA271424.1|CA271424 SCBGLB2073B11.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBGLB2073B11 5', mRNA seq GCTCACCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGCGCGTTCCCCTCCTGCACGCAACCTCCTCTTCTCCTCCATATCCAGGATCGCCGGTCTCCTTGAGACCTTGGCTCGTGGTTACCCCGCGCGCCGCCGGTGAGCTACGTTTGTTTCGATTTACCGGGCAATCCCGTTTGCTTCATGTTGTTGCGCAGGCTCAGATCTGATTGCTATTTTCGGCGTCTACGGCTTGAATCGAGCTGGGAGCGTGTGGATCTGAGCACGGNGGATACAACAAANCCGCGTGCATGAAGCCTTGGATCCGGCACGGATCTGGCGAAATGGGACGTTAATGGTAGTTCCTTTCGGAGCGGGGCTATGGCGACGATGGCTGAAGGCGGCGGCGGCGGGATCAATTGGCCTGCTCCACCTCGCGGGATGATGTCTCTGCGCTGATACTTATTGGATGAATTTCGATAATTATTAGTAGATCTAAGAGATGTGCTGCCGCCTTGAAGAGGCGAGGTAAGGTGCAACATGTAAGAGTCGAGTCGCGTGCGTCGACGGGAAAAAGAGGGGGGAAATAGATGTGACATGCTAGAGGCCTTTGCCATGACCATGATGGGTGCGCGCGCATGGCAGGCCACGGTTATAATATANAGATGATTATTGTGTTCGTGGGGAGGAGATCGCACGGCGGTGATTTTTTTTTGGCACCGGGTTCTCCTTCCCCATGGTGTCCTGTCCTTTCGTATGGTGCTTGCGCCCTCTCGCTCGTCTTGGTCAGCTAGATGCCGGA | |||||||||
gi|268800821|gb|DN235413.1|DN235413 SUR01-021F-A04-021.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SUR GCTCACCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): AACCAACAAACCATTGTTCGACGCGTTCCCCTCCTGCACGCAACCTCCTCTTCTCCTCCATATCCAGGATCGCCGGTCTCCTTGAGATCTTGGCTCGTGGTTACCCCGCGCGCCGCCGGTGAGCTACGTTTGTTTCGATTTACCGGGAAATCCCGTTTGCTTCATGTTGTTGCGCAGGCTCAGATCTGATTGCTATTTTCGGCGTCTACGGCTTGAATCGAGCTGGGAGCGTGTGGATCTGAGCACGGGGGATACAACAAACCCGCGTGCATGAAGCCTTGGATCCGGCACCGGTTAGTCCTTACCGCAAGATTCTTGTTGTGTGTTGGTGGTCCAGGATCACGTGGGCTGATCTGCGGCGTTTGCTGATCTGCCGCGCTGTTTTGCTTCGGGTTCCGGATCTGGCGAAATGGCGACGTTAATGGTGGTTCCGTTCGGAGCGGGGCTATGGCGACGATGGCTGAAGGCGGCGGCGGCGGGATCAATTGGCCTGCTCCACCTCGCGGGATGATGTCTCTGCGCTGATAATTATTGGATGAATTTCGATAATTATTAGTAGATCTAAGAGATGTGCTGCCGCCT | |||||||||
gi|268805556|gb|CN607855.1|CN607855 SUL01-019F-E12-087.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo GCTCACCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): TTAACCAACAAACCATTGTTCGACGCGTTCCCCTCCTGCACGCAACCTCCTCTTCTTCTCCTGCACGCTTACCCCGCGCGCCGCCGGTGAGCTACGTTTGTTTCGATTTACCGGGAAATCCCGTTTGCTTCATGTTGTTACGCAGGCTCAGATCTGATTGCTATTTTCGGCGTCTACGGCTTGAATCGAGCTGGGAGCGTGTGGATCTGAGCACGGGGGATACAACAAGCCCGCGTGCATGAAGCCTTGGATCCGGCACCGATCTGGCGAAATGGCGACGTTAATGGTAGTTCCTTTCGGAGCGGGGCTATGGCGACGATGGCTGAAGGCGGCGGCGGCGGGATCAATTGGCCTGCTCCACCTCGCGGGATGATGTCTCTGCGCTGATAATTATTGGATGAATTTCGATAATTATTAGTAGATCTAAGAGATGTGCTGCCG | |||||||||