| mature miRNA: GCTCTTCCTCTTCCTCATCAT species: Lolium perenne database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|300182940|gb|GR517625.1|GR517625 ELPLPE1034F11-b1FSP_20010122 Perennial ryegrass etiolated seedlings library (LPE) Lolium per GCTCTTCCTCTTCCTCATCAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAAATTAACTATCTCTTATTTTCAGAAGGCAATTTACGACCAATTTCTTCTTACACCTACGTACAGTTCAAGGTTGTCACGTAACACAACAAAGAAAGCACACCGGACGTACAATTAGAGAGTGGCAAAAACGACCTCGTGCTCATGATACATATACATCGATCTAGTCGTCGTCCTCGCCGCTGATGAACTTGCCGGTTCCTGGGTTGATGGCGGCGATGAAGAAGAAGACGACGTTGAAGAGCACGAGCGGCTCGATCTCGGCGATGGGCACACCGGTCTCGATGTTGAGCTGCGCCAGCGCGCCCTTCCCGGTGATGATCTCACCGATGATGGAGAAGGCGATACCCAGCTGCGCCAGCCGCCCCACGAACAGCTCGTTCGACTTGGTGAACCCAAAGAGCGGCCCTCCCTCGCTGAGGCCGAGGGCAGAGCGGAAGCCTTGGCCTGGGGCGATGACGGCCTTGTCAAGGCCGGTGGGCTGCTCATCGACGAACCTTCCACGGTCACCGAGGGCACCGATAGCGCCTAGGAGGGTGAAGAGGATGAAGAAGAGGAGGAGGGGCTCCGCCTCGTAAATCGGGATACCGGTCTCAAGGTTCAGCTGGGACAGAATGCCCTTGCCGGTGATAGCCTCTCCCAATATCGATGCGGCAAAGCCAATCATGGCAACACG | |||||||||
gi|300192778|gb|GR519781.1|GR519781 ELPLPE1035H03-g1RSP_20001212 Perennial ryegrass etiolated seedlings library (LPE) Lolium per GCTCTTCCTCTTCCTCATCAT EST sequence (targeted fragment marked with yellow): CCCAAATTCCAAATTCCAAATTCCAGCGGATTCTGAGACTGGAGCTTGTGTCGGGGCATTCGATTCCAGAGCCGGTGACGGAGGGGGATGTCAGGACCCCTCGACCGATTGGCCAGGCCATCTTTCGAAGGGTTCACACATAATGATGGAAAGAGGGAGAGCAGATCGGACGCGGACAACTCAGAGGGAGAGAAGAAGACTAAAATAAACTCTTTCAAGAAAAAAGCTATCAATGCAGGGAACAAGTTCAGGCATTCCCTAAGGAGGAAAAACAAAAAGAAGAATGAGATTTCCATCGAGGACATAAGAGATGTACAAGATCTTCAAGCTGTTGATGCGTTTCGACAGTGCTTGCTTGATGAGGACTTGTTGCCACAGCAGCATGATGATTACCACATGATGTTGAGGTTCCTGAAGGCACGCAAGTTTGATGTTGAAAAAGCAAAGCATATGTGGTCAGAAATGCTTAAATGGAGAAAAGAATTTGGGACTGATGATATAGAGGAGTCTAATTACTCCGAGTTAAACGAAGTTATGAAGTATTATCCACAGTTTTACCACGGGGTGGATAAAGACGGAAGACCTATCTACGTGGAGTTAATAGGAC | |||||||||
gi|300185818|gb|GR510408.1|GR510408 ELPLPC1003D07-g1RSP_20010824 Perennial ryegrass 3 wk seedlings, cold-acclim. for 7 days at 4 GCTCTTCCTCTTCCTCATCAT EST sequence (targeted fragment marked with yellow): GGAGGCGGGGGCGCCCGGGCCTCGCCAGCTTCGCGCCATGCGCGCTCCCGCACGCCTCGGGCTTATCGCTTCACGGCCGCTGGGGCAGGCCCAAGACCAGGCATAGTCACATATTGCGTGCTGCTGGACCTGACGAGCCACATGTTGCAACCCCAACATGGTCTGAGGCAGCTCTCGACAAACCTTATCTCGATGAAGCGATCGGAAACGAGGAGCTTGAAGCTGTCCTGGACACACCTCTTCCTTCCCATCCTAAGCTTATCCGGGGCCAGTTGAAGAATGGCCTCAGATATCTTATTTTGCCAAACAAAGTTCCAGCTGATAGGTTCGAGGCTCACATGGAAGTTCATGTTGGATCAATTGACGAGGAAGAGGATGAGCAGGGAATTGCACATATGATTGAGCATGTTGCATTCCTTGGGAGTAAAAAGCGCGAGAGACTCTTGGGGACAGGTGCAAGGTCTAATGCATATACAGACTTCCACCATACAGTCTTCCATATACATTCTCCAACTAAAACAAAGGAATACGGTGAAGCCTTACTCCCTTCTGTGCTGGATGCTTTGAATGAGATAGCTTTTCATCCAAAGTTTTCTTCATCTCGTGTCGAGAAAGAGAGAAGAGCAATTCTGTCAGAG | |||||||||
gi|152039954|gb|ES700407.1|ES700407 ve_008b_b03 Lolium perenne ve Lolium perenne cDNA, mRNA sequence GCTCTTCCTCTTCCTCATCAT EST sequence (targeted fragment marked with yellow): GGAAGCCGCCGGAGATAGGGGATACGTTGGTTGAGAGGGCGGCTGTGGTCGCCAAGGACTGGACAGAGCGGTTTGGGATCAAGATGGACACGCCCGCACCCTGTAGCCAGGAGGTGGAGATGACAGAAGCGGCTGTCGTAGATAATGTAGCAGCGGCAGAGAAGAAAGTAGAGCCTGTAGATGTGAAAGAGGAGGATGAGCAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAGAAGTAGAGGAAGAGGAAGAGGAAGAAGAAGAAGTAGAGGAAGTAGAGGAAGAAGAAGAGGAAGACCCGGAGGAGGTGGTGGCTGCATCAGGCGATGAGGAAGAAGAGAATCCCGAGGAAGTAGACAATGAAGCACAGGAGGATCCAGAGGAAGCGGAGGAGAAGGGCCAAGAGGTGAAGGTGGAAGTGGCTGATGAGGAGAAGAAAAAAGAACAAGCAGAAAAGAGCAAAGTTGAGGAAGTGAAGAAGGCAGCTGGAGGAGTCAAGGAGGAGGAGAAGAGTGCACTGGGGCAAGCAGAGGCTCATATATTCCTGCAGATGGTTGCGGCATTTGCCTTGAAAGACAAGTTCAACCAAGAGTTCTTGAGGAGCCTGTTTCT | |||||||||
gi|300187651|gb|GR512990.1|GR512990 ELPLPF4001A03-b1FSP_20010626 Perennial ryegrass seed immature, 7 weeks library (LPF4) Lolium GCTCTTCCTCTTCCTCATCAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGAGCAAATAACAATAATACTCTTCGAAAGTTCAGAAGTACAGACCCAAATGTACAACACCCCCCAGTCCATGTGTCGATGGCCATAACACAGGCACATCCCAACGCAAATAAAGCGAACTTGCAGCTACAGAGCAAGCACACTAACAATAACGCAGCTCAACATCGAACAATTGGTGAGTACGAATGACGATCTCAGTCGGCCTTCTTGGAGACGTTCGATTTGGCGGCGCCGTCATCGTCCACGGACGACATATCCCTCGAACGCTTGTCCTCGGCCGTCTTGGCGTAGACCTCGTCGCGTGTGTGGAAGTAGGTCTCGAACGCGCGGGGGAGGAACTTGGGGATGAGGAAGACGAAGAGGTTGATGGAGAAGTAGACGATGTTCGCCACGGCGAGGTACCTCCCGAACCAGACCCACGCCTTGTCCTGCACGGGGGCGGTGCGGGTGACGAGCTTGTTGGTCCACACGTCGTAGACCCAGTCGACGATGACGAAGACGCGGCGCACGGTGTAGAGCAGCGGCACCAGCGCCCTCAGCGGCGGCGAGAAGATGCCGAGCGAGCCGATGATGTTCTCCGTCAGGATCTGGCAGGAGAGCAGGAACAGGTGCGGCGTCGCGGACCGCACCGCGGCGTCGTCGCCGCGCGCGAACCCG | |||||||||
gi|152039258|gb|ES699711.1|ES699711 rg2_002_h05 Lolium perenne rg2 Lolium perenne cDNA, mRNA sequence GCTCTTCCTCTTCCTCATCAT EST sequence (targeted fragment marked with yellow): GGGAAAAAGAGGTCTTATCTGTTTGCTTGTGATCAAATCGAAGATTTAGAGCCAAGCCGAAAGTACCAAAGGAGCACTATTCAGACCGTAGTTGGAGGAGAAATTACTTCAAACTGCCCATCAATCCTAGAAGAGAAGTGTTCGAAAAATGTACATGATGATCTAGCATTTGCAAATGGTAAAGTTGATGAGTCAGATTTTGCTGATGATGATGAACCTTCAGAGGATATCACAGTGTCTGCAACTGAACCATCTAATGGATTGCTTGATAAGCAAGAGGACGATGCTAACGGTGAAGAGGAAGAGGAAGAGGAAGAGGAAGATGAAGATGAAGAGGAAGAAGAGAAAATATCGCCAGGGAAGAAGTTGTGGCGATTTCTCATCACATGAGTAGGTTCCACTTATGATAGAGATACAGAGCTGACTGTAGGCTGACAGTTACCTCTGATGAAGATATTTTCCTTTAGGTCCATTCATCTGCATCTCCACCTTTCGTATTGAACGGTGGCACGTTGTTGGGTACTTGTTGGTTGTGTGCCTGTTATTACCAGCGGTGGTGGTTTTCGAAGCAGCTGTGGAACTACGTGATCTATTTTGTGTTTTCACATCCCGGGCACTTCAACATCTAAAGGGTTGATAGCTTCCTGGATGTGTACCAAATGATTGGGGGT | |||||||||
gi|152039258|gb|ES699711.1|ES699711 rg2_002_h05 Lolium perenne rg2 Lolium perenne cDNA, mRNA sequence GCTCTTCCTCTTCCTCATCAT EST sequence (targeted fragment marked with yellow): GGGAAAAAGAGGTCTTATCTGTTTGCTTGTGATCAAATCGAAGATTTAGAGCCAAGCCGAAAGTACCAAAGGAGCACTATTCAGACCGTAGTTGGAGGAGAAATTACTTCAAACTGCCCATCAATCCTAGAAGAGAAGTGTTCGAAAAATGTACATGATGATCTAGCATTTGCAAATGGTAAAGTTGATGAGTCAGATTTTGCTGATGATGATGAACCTTCAGAGGATATCACAGTGTCTGCAACTGAACCATCTAATGGATTGCTTGATAAGCAAGAGGACGATGCTAACGGTGAAGAGGAAGAGGAAGAGGAAGAGGAAGATGAAGATGAAGAGGAAGAAGAGAAAATATCGCCAGGGAAGAAGTTGTGGCGATTTCTCATCACATGAGTAGGTTCCACTTATGATAGAGATACAGAGCTGACTGTAGGCTGACAGTTACCTCTGATGAAGATATTTTCCTTTAGGTCCATTCATCTGCATCTCCACCTTTCGTATTGAACGGTGGCACGTTGTTGGGTACTTGTTGGTTGTGTGCCTGTTATTACCAGCGGTGGTGGTTTTCGAAGCAGCTGTGGAACTACGTGATCTATTTTGTGTTTTCACATCCCGGGCACTTCAACATCTAAAGGGTTGATAGCTTCCTGGATGTGTACCAAATGATTGGGGGT | |||||||||
gi|300183643|gb|GR514954.1|GR514954 ELPLPH1008A02-g1RSP_20010524 Perennial ryegrass 3 wk seedlings, heat-stressed for 8 hrs at 3 GCTCTTCCTCTTCCTCATCAT EST sequence (targeted fragment marked with yellow): ATCAGATCACGATCTGGAACTGAAGTCGATCTCCTGTGAACCTACCACAGAGCAGGAGCTGGAGCAGGATGAGGAGGAGGAGGACGACGACGAAGAAGAAGAGGAAGAGGATGAACAGGACGAGGACGAAGAGGAGGAGCTAGCTCCAGAATCCTCCATGGAAGAGGAGAAAAACGACTTCGCTCACCACCGTAAGGACTGGGAATTCACATTTAAGCACGGGAATCGTACCTTCGATCTTATCACGTCACTGAGTCCAATGGTCTACACACACTGCACGCCGAGCTGCCTCCCAGAAGATGCCGATCTCGTCCCAAGCCTACAGATGTTCTCCATCAAAATCGCCAAGATAAAGCACCTCCAGTGGCCGCTTCATGTCTACGGCACTGTCGCTGCCCGGGACTACGTGGATCACAAGCGGAACATCATCTTCTTCCGTCCGAGGAGTGAGAGCCAAACCATCACCAAAAATGATCCTTATTTGCACCTGACCGGACCGCACCGCGGGCTCCTGTCCGTCGAGCCTGTACACATTGAAATCCGACTCATGCTAAAGGAGGGACAGTCTTGGCCTGAAGATA | |||||||||