| mature miRNA: GGAATCGCCAAATGGGATTCCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73883941|gb|DT486679.1|DT486679 WS02531.B21_K09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_K09 3', mRNA sequence GGAATCGCCAAATGGGATTCCA EST sequence (targeted fragment marked with yellow): CATTATTTCCTATCTTCATTAATGGAAATGATTGATGACCGGATCTTTCAATTCCTCATGGCAGTCGCATCAGTGGTGCCTATAACATGTACGTTGACTGAATTAATTATAATCAGATTATCAGTTATAATCCAATATTCTAAATCATTAAAACTCTTTACAGGGGATGCTATGCAGGCCCAACACCCATAGGCCAAGCTTCCATGTAAACATGGTTGGCTTGGAGAAGACAAAATGGTCCAACTCAAGCAAATATCCATGGGATTTGGATGCTGAAATGATGGATGAGAAGGAAGAAGAATTTGAGGTGAGGCTTCAGCAGGCTTTTGGCCGTTTTTGTGAGACCTCCAAACGTAGAAAGAGTTGGAGTCCTTTTAAGTTGCCCCAAAAGAAAGGGAAGAAGCAATGGCGAAGAACATCAACTTGAATGAATTCCCATTGCAACCAAATGGAACTGTGCTTTTGTTCCCCTGTTGTGGGGGTGATTGGTTTGGATCGAGATCACCTGTTTCACCAATGGAATGTGATTTGGTGATTCCAGCAAAGCCTAATTTGAGGAATTGAGCTGGGTTTTAGAGTCTAAACAAAAAAAAGACAGATGGGTTTTGGGTGTAATTTTCAAGCTTGTAACAGGCAGTTACCTTGCAGCATGCGACTTGTCATAGGTTCTGTCAATGTCAGAATAACCCCCATCCCATCAAAGGAAGAAAAAATCAAGATACATTTTGCACAAGCAGCACATAATGTTAGCCTTTTTGCACTAATTTTCAATATTTTGTACATATAATATTCAATTTCAATAAATTTCACAGTTACGTAAAAAAAAAAAAAAAAA | |||||||||
gi|52387181|gb|CV232051.1|CV232051 WS0196.B21_G08 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0196_G08 3', mRNA sequence GGAATCGCCAAATGGGATTCCA EST sequence (targeted fragment marked with yellow): GCTGTTGCTAATGAGGGATCCCGTTTGGAGATTCCAGAAGGTCCACTGGGCAGGCTAATATCGGATTGTTGGGCAGAACCGGATTTACGGCCAAGCTGTGGAGAGATACTCACTCGCTTGCTCGATTGCGAGTACACATCTTGCTGATACAGTCCGTTTCTTGTATACAAACAATGGTAGAGACGTTGCAATGTTCTCGGCTTAGTTGCAGCCTCATAATTTTTCCAATCATTGTGAAAACATGAAATTCTTCAATTTTCACTGGGACAAACTCCAATCATTTCGTGTAATCAAACTGGGAGAGAAATAGAAAAGAAAAAAAAAAGTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52497022|gb|CV244047.1|CV244047 WS0253.B21_J06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_J06 3', mRNA sequence GGAATCGCCAAATGGGATTCCA EST sequence (targeted fragment marked with yellow): TTTGGGTGCTTGCACAAAGCCTCCACGCTTATCGATGGTTACTGAATACATGGAGATGGGGTCCTTGTATTATTTGATCCACTCGAGTGGTCAGAAGAAGCTTAGCTGGCGGAGGAGGCTAAAAATGTTGCGGGATATATGCAGGGGATTGATGTGCATACATCGAATGAAGATAGTTCATCGGGATCTTAAAAGTGCAAATTGCCTCGTGAATAACCATAAGACAATCAAGATCTGTGATTTTGGACTCTCCAGAGTAATGACAGACATACCAATTAGGGACTCCTCATCTGCTGGAACTCCTGAATGGATGGCACCGGAACTTATCCGTAATGAACCTGTCACTGAAAAATGCGATATTTTCAGCCTTGGGGTGATAATGTGGGAGCTCTGCACACTAAGTAGGCCATGGGAAGGTGTACCCCCAAAGAGGGTAGTTGATGCTGTTGCTAATGAGGGATCCCGTTTGGAGATTCCAGAAGGTCCACTGGGCAGGCTAATATCGGATTGTTGGGCAGAACCGGATTTACGGCCAAGCTGTGGAGAGATACTCACTCGCTTGCTCGATTGCGAGTACACATCTTGCTGATACAGTCCGTTTCTTGTATACAAACAATGGTAGAGACGTTGCAATGTTCTCGGCTTAGTTGCAGCCTCATAATTTTTCCAATCATTGTGAAAACATGAAATTCTTCAATTTTCACTGGGACAAACTCCAATCATTTCGTGTAATCAAACTGGGAGAGAAATAAAAAAAAAAAAAAAAAA | |||||||||