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mature miRNA: GGAATGTTGGCTGGCTCTAGG
species: Manihot esculenta
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|164386612|gb|DB944788.1|DB944788 DB944788 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_019_H2 

GGAATGTTGGCTGGCTCTAGG
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CCTTACAACCGACGGAGTTGC

EST sequence (targeted fragment marked with yellow):
TGCTTGGCGCGGCAACCAACATTACTAATAGTTATTATGAATTAGCTGCTGAACTTGTCAGCGTGGCTAGGAAAACGGAATCTTCACTACAGAGAATACGGCAGGGTGCTCAACGACGAGCTGGAGCAAGCTCAGATGTCTCAGACCACAGTGTCTCTGGTACTGACAAGATATGCATGCAGTTGTTCCTTGATATCCAGGAGTATGGACGCAACCTCTCTGTTATGGGCGTTGAGGCAGCCAACATTCCAGCATATCGTTCCTTGTGGCAATGCGTCGCTCCTCCGGATAGGCAAAGTGTGATTAATTTGTGATGTGAATGAACATTGCCTACTGGCAGCTTGTAGATGTATTTTCTTTTTCAAGTTATCAAATTCGAATTACTTATATTTGTAAGTTGAGTTTGCTAATATTCATTTTTGTTTGTTTCATAGGATTCTTTCTTAAAATATTCTTACCATCTTTTTTCACT