| mature miRNA: GGAATGTTGTCCGGCTCGGGG species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198015911|gb|FL757092.1|FL757092 CCGC7533.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgat GGAATGTTGTCCGGCTCGGGG EST sequence (targeted fragment marked with yellow): GAGGCGCATCGGCAGGTTCCCCGTCTCGCGATCCTCCTCCCCGTCGCCCTTTGCCTCGCGCCGCCCTTCGCGTGCGTCCGCCTCCGCCGCCGCTCCCGCGTCGCCCTCCGCCTCCCAGCTCGACGGGGCCAAGCCGCTAGCTGCCGCGACGCCCTTCGCCCCCCAGATCGCGTCGGCCCCCTCCTCGGCCGCTGACTCGCGCGGTGTGGTCGCCATCTCCGCCGACTCGCGCTCCTCCTCGCGGCTTCCCGCGCCGCCCTCCCCGAGACACCCTGCGACTCCCGCCGCCGTCCTGCTTTCGTCGTCCTGCTCTTCCTCGCGCTCGTCGTCGCGCCACCGACATCCTCGAGCCGGAAGTCCCCCGCCTCCCCGTCCCGGACAACATCCTGCTCCAACCGGGGGTCCTCGCGGCGTCGTCGCCATCCCTGGGGTCCTGCGCAGTCTCGTGGGCGGAGGACCCGCTGCCCGATCGACGAAGTTATACTAAGAACCTTGTGTTTCCACCAAAGTCTGATAAAAGGACTCCATGGAAACAAACTGTTCTCGTACTCCATTGGGCGATTTGACGAACCACAATGATGGAGGGGCTGAGAGGGAAAGGGAGAGAGCAAGGTATGCAGCAATGTCTCAGTCTGAGAAAAATGCGAGAAATTTGAGGCAGCGTGAAGCGCGTCAAAAAACAAAAGAACATCATAATCTCATGGAAATAGTTGATTCTCGTGCTCCATTTGGCGACTTGACAAACCAGAGTAATGGAGGA | |||||||||
gi|198144669|gb|FL863099.1|FL863099 CCGI7727.g1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI77 GGAATGTTGTCCGGCTCGGGG EST sequence (targeted fragment marked with yellow): CCAGACGTATGGATCATGTTGCTAGGCGGAAAGGATGTGCAGCTCAGGTTGCTGCTGAGAAGGGAATGTTCACTTTTCTCGTAAACATACAAATTCCTGGATCAAGTCATTACAGCTTAGTCCTTTATTTTGTCTCGAGCTCCTTGAAGAAAGGATCACTGTTGCAGCGCTTTGCTGATGGCGATGATGATTTCCGGAACAGCAGATTGAAGCTTATCCCATCTGTTCCGAAGGGGTCTTGGATTGTGCGGCAAAGCGTTGGAAGCACACCTTGCTTACTGGGGAAGGCTGTCGACTGCAGCTATTTGCGTGGTCCTGAGTACTTAGAAGTGGATGTAGATATCGGTTCATCGGCGGTAGCCAATGGGGTCCTGGGCTTGGTGTTTGGTGTTGTTACCACCTTGGTAGTTGACATGGCGTTTCTTATCCAGGCAAACACATACGACGAGCTCCCGGAGCAACTTCTAGGCGCCGCGCGGCTGTCAAACATCGAACCCTCCGCGGCAGTCAATCCTGAGCTTGACAGCATTTCCTGAGCGGGATGAATCAAAAACTGTGCAGATTCTTTCATTCTTTCCCCCAAACCCTCTCCATTTGTTGAGCCACCGCAGCATTTCGCAGTTTGGTTCAATGAGGTGCAGACAGACTGTCACAGCTCCGTTATGGGCTGATAAGCCATGTATTGTTGGGCCAGAGGCCAGACTAATATATGTAAGCACTCGTTAACC | |||||||||
gi|198015938|gb|FL757093.1|FL757093 CCGC7533.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgat GGAATGTTGTCCGGCTCGGGG EST sequence (targeted fragment marked with yellow): CGAGCCGGAAGTCCCCGCCTCCCCGTCCCGGACAACATCCTGCTCAACCGGGGGTCCTCGCGGCGTCGTCGCCATCCCTGGGGTCCTGCGCAGTCTCGTGGGCGGAGGACCCGCTGCCCGATCGACGAAGTTATACTAAGAACCTTGTGTTTCCACCAAAGTCTGATAAAAGGACTCCATGGAAACAAACTGTTCTCGTACTCCATTGGGCGATTTGACGAACCACAAATGATGGAGGGGCTGAGAGGGAAAGGGAGAGAGCAAGGTATGCAGCAATGTCTCAGTCTGAGAAAAATGCGAGAAATTTGAGGCAGCGTGAAGCGCGTCAAAAAACAAAAGAACATCATAATCTCATGGAAATAGTTGATTCTCGTGCTCCATTTGGCGACTTGACAAACCAGAGTAATGGAGGAGCGCACCCAATCCACAGCCAGCAACCAATGATAGTAAGCATCGAAAGCAGGAAAGGGATAGAGCAAGGTATGCAGCAATGTCTCGAGAAGAGAAGAATGCGAGAAATCTGAGACAGCGTGAATCACGACAAAAAAAAGAAAGGTGCTAAATATTTTTTATTTGTGGTGTTACAAATGGATTATATGTAATCAAGAACTTATGCATATGGTTCCCACGATTCTGAGCACCGAAATAATATGTATTACTAGCCT | |||||||||