| mature miRNA: GGAATGTTGTCTGGCTCGAGA species: Helianthus paradoxus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|33123730|gb|CF084687.1|CF084687 QHL3I11.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL3I GGAATGTTGTCTGGCTCGAGA EST sequence (targeted fragment marked with yellow): GGCCATACAAATTCAAGTTTTATATATTTCTATGAAGATCTTTGATTAAATACAAACTCAAATAAGATTAACCCCACAACAAACTATACAACTATTTTACCAAAACCAACATTGGTCTTCTTCCCTTATGGTCTTGCACTCACTTACTATATATAGCCGAAGCCGAAGGCCGCGGATAGGCGGTGGAACGCTCACCGCTAGCGGCACCACCGGCTTGGGAAACTAAGCGCCCCGTATGTGCCTCGTTGGCGGAATGGCTTCGTAACCTTGGCGCCTTCTTTGGATCTTGAAGCAACTCTAGTTCTTTAACCACATCTACCATGCTCGGCCTCAACCTTGGGTCCGTTGAAATGCATCGTAGGGCTAGGTTAGCTGTGGCGGGGGCCCCGTTTAAAGTGTATTGACCTTCTAGACGGGTGTCAAGAATCCGAAAAAGTTTCCGTTTGTGGGGTAGGTAAGGTTTGGCCCATGCAACTAGACTTTGGTCACCCGTGGGTCGGCTTTTGTCTATGACTCTTCGGCCCGACAACATTTCGATGAGGACCACTCCAAAACTATA | |||||||||
gi|125472408|gb|EL484046.1|EL484046 CHUM5905.b1_B13.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUM5905, mRNA GGAATGTTGTCTGGCTCGAGA EST sequence (targeted fragment marked with yellow): AAAAAGGCCTCAACCACTCCGAACCCATAGCCCGGACTGCGACGATGTTGCGCTTTAGCAGTCCTACATTAGAATCAGGGCGAGCATACGCGGTCTTTTGAAACTCATACGCCGTATTACGAGCTACAAACATATTTTCTCTGGGTCGGACGACGCCTTGTAATGCGACTCCTGGACGAGTACGCGGAAATTACGTCAGAGAGATTAATCTTGATCCAGACAAAATTCGACGGGACAGGAACAGCCACTGTATTTCTTTGTATTAAAGAACAAAAAAAAACAAAAGGCGTTTCGGCTCGTTTCCCTTTTTATCCGACGAAGGTTAAACCTGCGGCCCCTTTT | |||||||||
gi|33121584|gb|CF082541.1|CF082541 QHL17J09.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL1 GGAATGTTGTCTGGCTCGAGA EST sequence (targeted fragment marked with yellow): CAAATTCAAGTTTTATATATTTCTATGAAGATCTTTGATTAAATACAAACTCAAATAAGATTAACCCCACAACAAACTATACAACTATTTTACCAAAACCAACATTGTTCTTCTTCCCTTATGTTCTTGCACTCACTTACTATATATAGCCGAAGCCGAAGGCCGCGGATAGGCGGGGGAACGCTCACCGCTAGCGGCACCACCGTCTTGAGAAACTAAGCGCCTCGTATGTGCCTCGTTGGCGGAATGTCTTCGTAACCTTGCCGCCTTCTTTGGATCTTGAAGCAACTCTAGTTCTTTAACCACATCTACCATGCTCGGCCTCAACCTTGGGTCCGTTGAAATGCATCGTAGGGCTAGGTTAGCTGTGGCGTGGGCCCCGTTTAAAGTGTATTGACCTTCTAGACGGTTGTCAAGAATCCGAAAAAGTTTCCGTTTGTGGGGTAGGTAGGGTTTGGCCCATGCAACTAGACTTTGTTCACCCGTGGGTCGGTTTTTGTCTATGGCTCTTCGGCCCGACAACATTTCGATGAGGACCCTCCCAAACTATACACGTCAC | |||||||||
gi|33123231|gb|CF084188.1|CF084188 QHL21P05.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL2 GGAATGTTGTCTGGCTCGAGA EST sequence (targeted fragment marked with yellow): CGGGCCATACAAATTCAAGTTTTATATATTTCTATGAAGATCTTTGATTAAATACAAACTCAAATAAGATTAACCCCACAACAAACTATACAACTATTTTACCAAAACCAACATTGTTCTTCTTCCCTTATGTTCTTGCACTCACTTACTATATATAGCCGAAGCCGAAGGCCGCGGATAGGCGGGGGAACGCTCACCGCTAGCGGCACCACCGTCTTGAAAAACTAAGCGCCTCGTATGTGCCTCGTTGGCGGAATGTCTTCGTAACCTTGCCGCCTTCTTTGGATCTTGAAGCAACTCTAGTTCTTTAACCACATCTACCATGCTCGGCCTCAACCTTGGGTCCGTTGAAATGCATCGTAGGGCTAGGTTAGCTGTGGCGTGGGCCCCGTTTAAAGTGTATTGACCTTCTAAACGGTTGTCAAGAATCCGAAAAAGTTTCCGTTTGTGGGGTAGGTAGGGTTTGGCCCATGCAACTAGACTTTGTTCACCCGTGGGTCGGTTTTTGTCTATGGCTCTTCGGCCCGACAACATTTCGATGAGGACCACTCCAAAACTATACACGTCACTTTTCGTGGATAAATGACCT | |||||||||