| mature miRNA: GGAATGTTGTCTGGCTCGGGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|66927396|gb|CX114244.1|CX114244 EI086M12 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl GGAATGTTGTCTGGCTCGGGG EST sequence (targeted fragment marked with yellow): CCGCGTAGGCTCGGGCGGAACTCCGGNGTGACCACNGCGTCGCGCAAATATACTACACACGCGCGTACGGACACCACCCAGTCCCCTCCCCACACCACGCGCCGCCAAAACCTCCGCCGGTTTCGCACCACCACCACCGCCGCGACCATGGCCTCCTTCTTCGCCGACGACGGCGCCGACGAGCTCCCCCGCACCGCCTCCCACCCCTTCGACGCCGACGACGACGCCGCGCCCGATGCATCAGGAGGCGCCGCCGCCGACGACACCGGATACGGCGGCTACGCCTCCTTCGTCGACGGTGGCGTAGAGGATGTGGAGGAGGAGGAGGAGGAGATCGCCGTGGAGTCCGAGGGGGTCCCGATCGGCCACGTCTCCGGAGGGTTCTCGCCCTCGCCCTTCTCCCCCGACCCGGAGCTGGACGGCGGCGACGGCCCTATCCTCCCGCCGCCGGCCCAGATGGGGGCGGAGGAGGGGATCCTCCTCCGCGAGTGGCGCAGGCAAAATGCTATAGTACTTGAGGCAAACGAGCGGACAGGAGACGCGAGCTACGGGCCCAGACTACTTGGCTGACGCCGCCGAGTTTACGACAGCTTTCTACGAGACAGACGCTACCGCACTGTGAAACCCCCACGGGCCCTCCAGACCATCAGCACGCTGTCGCCACCTGGCCAGACAACAATCCATCCGAACCGCCCACCAAATGGAAGTGAAATAGGACTCTACCCCTGAATAATCCATGTGAAAGGGGCACACGCCGGCGAAGCCACCCCACGCAACGGCCAGCGGG | |||||||||
gi|88561547|gb|CI492264.1|CI492264 CI492264 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G GGAATGTTGTCTGGCTCGGGG EST sequence (targeted fragment marked with yellow): GCGCATTTCACCATCGTACAGTAAAAATATTAGAAAAAGACAATCACAAATAAAAAGACAATGGAAAAAAATCTANTGATATGAGCCCAGCCCCTTGCACAGGCTAATTACATAATGGCTGTTACTTCCTTTAACTACCTAGAGTGCATCGCCACTGGAAAAGCATCTGAATCACACCGCCCACCTACAGTTCACTTCATGCATTTCAGGCCACATTAAGGACCGCGAACAAGACAGCATTCCTGTGGCCCCATCACCAGTGGCATCCATTAGGACCTCGATCACTTACCTGTATGNAATATATCCTNCTGTTCCTTTTCCAACCTTCCTGATCATGCAACTCATGGTTTCGATAACTG | |||||||||
gi|44667786|gb|CR281220.1|CR281220 CR281220 Oryza sativa library (Han B) Oryza sativa cDNA clone y838f05p5, mRNA sequence GGAATGTTGTCTGGCTCGGGG EST sequence (targeted fragment marked with yellow): GGGAACTCGGCCATTATGGCCGGGGGAGCTGATCAGCGATTAGGCGAAGCAAACGTCCAAATTATATGGGTGCGCCGCGGCGTCTGGTCCCGCCGCCGCCGCCGCCGACAACGACGAGAAGTGCAGCCGGACGTGCGAGTCGGAGCACTGCGCGGGCACGTATGCACAGGCGCCGTTGATGCGGTACGGCAAGTACTGCGGCGTGTCGTACACCGGGTGCCCCGGCGAGGCCCCCTGCGACGCCCTCGACGCCTGCTGCATGCTCCACGACGCATGTGTCCAGGCCACCGACAATGACTACCTCAACATGCTGTGCAACCAGAGCCTGCTGGACTGCGTGGCGGCGGTGAGGTCGCCGGCGGCGAGGATCAGGACGTTCGAGGGGAACCAGTGCAACGTGACGGACGTCGCCGACGAGATCACGTCGCTCGTCGAGGCCGCCGTCTTCGCCAAGAGGATCCTGCATAGGCCGTAGCTTTAATTAGCTAGCTTGTAGCCGACACATGTAATTAATTGTCGTTATAGCTAATTAAGCTGCTACTGTGCATGTCGTCTGGCATCATAGATCGATGCACATTGATTACATCACATCCCGCGCGGTCCCGGCAAGCTGAAACACAAAAACACACCACCAGAAAGACAGTATGCCGCACGGCCACCACACACCTCAAGTCGGACAACACTCCTCGGCGCGACTGACCCACTGGCCATGCCCCATGGGACGATTCAACCACGGCGGACTACAG | |||||||||
gi|88437369|gb|CI528728.1|CI528728 CI528728 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa GGAATGTTGTCTGGCTCGGGG EST sequence (targeted fragment marked with yellow): GTCAATTTTGAGTTCAGGTCGGCATTACCTTTTTCCCTAGGGAACTTTATACAGTAGTGAGTAAAAGAATACATAAAATAGGAACTTGAACCAAAAGAGACATACATTAAGGGACAAAGTTAAAGCTACCTTTTGCATCTAGGTAAGAGCTAAACAAACTCACCGAACTTTCTTTCGGGACTTGAAAGGGAACCCACCAGGTGGAGACGGTGAGAACTCCAATGGGAGGTGCGGAGGTTCTCCCCTCGCCAGACAGCATTCGGAGTACCTCCTCACTTGATGGTCGACGAGCTGGAGACCTTTGGATGCAAAGGAGTGCGACTGTAATGCAGAGTAAAACCTCATNCAGGTTCACATCCTGTAGGGCTGGATCAACAAGATCAATCAAGCGGCTCANGCGCGCAAGATGT | |||||||||
gi|86498887|gb|CI141520.1|CI141520 CI141520 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa GGAATGTTGTCTGGCTCGGGG EST sequence (targeted fragment marked with yellow): GATCAAAACCAAATCACCAACAAAAAAAACAATGTCGTAATGCTACACCGTCACCAACAAAGATTATACAGCAGCATGAAACATATATTTTGCCCATGCCGTTCGGTCATATTGTTTTTGCTGCTAGGCTAGCAAAAACTGATGAACATGTGGAATGTATTACCGAAAGAGTGGATCTATCTATGCGCCTGCTAGATTTGTACAACTCATAACAGCGAGGCTACTGCAGGATCCCCCTCGGTCCCCAACGTCAGTTGTACCATGCTGGGCAGTGCAGCTGGATCGCGTTGGGGGTGCCACTGGTGATGTCTACAGAAGCTTTGCGCCGTGGTTTAGTACATCCCTTTGAAAACAGGATTCGTCCGGCAGATGCTTGCGCCATACTCTTCATACTCTGCTTTTGTGTGGCAAGCCTCGTAGAATTCAGCGGTAGAGGCAAGCACAGAACCACCAAACCAGACAGCATATCTTTGAATAGGATGGCTAACTACATTTACTTCTATAGGTTGGGCCTTTGCATCTCCACCAAGTCGAGCATTAGATGCAAGGACTCGTGCATCCACTATCTTTTTTAGGTCCCGCTGCAGCCTCCTGTGGAAATCCTTAAACATAGTTGATCCCCCGGACAAGACAATATTCTTATAAAGAGC | |||||||||
gi|44667574|gb|CR281008.1|CR281008 CR281008 Oryza sativa library (Han B) Oryza sativa cDNA clone y790f01p3, mRNA sequence GGAATGTTGTCTGGCTCGGGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTGGAGGTTAATCACCGGATGATTAATAAAACCAAATTACTTGGTAAAGGCTACAGATCATCACCGGCTGATTCAATTAGTTAGGAAAAATAGATGAAAAAAAGAGAGAGAAAGGACTCGAAGTCTCCCAGCCTCGTCTGTATCGCCGTTGAACACAAGGACGCCACTTTTCCCCTGCGCGCACCGCCGTCCGTCGCCGTTGTTGGAATCCATGTCGCCGGATCCACTGCAGGCAACCTCCACCGCTGCTTTGCTACTCGCCGACCAGGCACCTGACGCACCTCCTCCTCCTCCTCTGCGCCAACCCCTTCTTCCTCGCCACCCACCTCCCCAAACACAACGCTCTCCACTTTCATCTCCTCCCCTCCATTGTTTGTTGACATCGGTGGCCAGATCCGTTTGACGTGAGCTCATAGACAGCGGATCCGGTGGTCCGGCGGATGGAGAACGGCGGGGACGGCCCGTGCAGCGAACGGGGATCGCGAGGACAAACTGCGGCGATAGGGAGACCGACGGACACAGGAGTTGGCACAGCGCGACCCTAACGGGGAAACACACGCGAGACAACACGCCCGTGCACGGAACGAGGGAAAAACGCCAGCAGAACCCCGTGACCCAGACAGCGTTCCACTAACAGCAGACAGGATGCAAAATAAAACGGCAAGGATCGACACGGCCACCAAACAAGGCCAAGGACGG | |||||||||