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mature miRNA: GGAATGTTGTCTGGTTCAAGG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|33663660|gb|CF294627.1|CF294627 30DGS--04-D21.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA cl

GGAATGTTGTCTGGTTCAAGG
|| ||||||||| |.|||||
CCGTACAACAGAAAAGGTTCC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTGAAAGATAAAAAGTACTTGATCATTACTGATGATCATAAAATAAAGTACACTTCAGGAAGAAGGAATGACCTAAAATGGCTCCTTCAACAGAGGAAGAATAGGGCTAGACAAGGTACACAAAGGTAGGCAAGGCCATTGCCGTCATCGTTAACGTTGGCCTCGATCAGCTGTCTCCGTTCTGCTGCCCGAAGCTGCATGATCCTGAGGGCAAGAAGGAGAAGGGATTCTCANAGATGTCAAATCCAGGTCGAGTGAAGTCATCAAGCCCACCGAAGCAAGGATCAAAGCTCAATGGCGAGAAATAGCGTGGATCATCGGCCATCTTCATGTCAAGATTTGGGATGTCGTCCGATGAGCTACCGGNGGAAGTTATACCCAGCGCTCCCCACCATGGTGTTCATCGCCTCGCTGCCTTGAGGTTGCTCTGATGCTCCTGTTACTTTGATATCATCCATAGGGAGTGCAGGCGTGTGCCCTTGGAAAAGACAACATGCCCAAATAACTTGTCTTTTCT



gi|44667574|gb|CR281008.1|CR281008 CR281008 Oryza sativa library (Han B) Oryza sativa cDNA clone y790f01p3, mRNA sequence

GGAATGTTGTCTGGTTCAAGG
||||.|.||||||| ||| ||
CCTTGCGACAGACCCAGTGCC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTTTTTTTTGGAGGTTAATCACCGGATGATTAATAAAACCAAATTACTTGGTAAAGGCTACAGATCATCACCGGCTGATTCAATTAGTTAGGAAAAATAGATGAAAAAAAGAGAGAGAAAGGACTCGAAGTCTCCCAGCCTCGTCTGTATCGCCGTTGAACACAAGGACGCCACTTTTCCCCTGCGCGCACCGCCGTCCGTCGCCGTTGTTGGAATCCATGTCGCCGGATCCACTGCAGGCAACCTCCACCGCTGCTTTGCTACTCGCCGACCAGGCACCTGACGCACCTCCTCCTCCTCCTCTGCGCCAACCCCTTCTTCCTCGCCACCCACCTCCCCAAACACAACGCTCTCCACTTTCATCTCCTCCCCTCCATTGTTTGTTGACATCGGTGGCCAGATCCGTTTGACGTGAGCTCATAGACAGCGGATCCGGTGGTCCGGCGGATGGAGAACGGCGGGGACGGCCCGTGCAGCGAACGGGGATCGCGAGGACAAACTGCGGCGATAGGGAGACCGACGGACACAGGAGTTGGCACAGCGCGACCCTAACGGGGAAACACACGCGAGACAACACGCCCGTGCACGGAACGAGGGAAAAACGCCAGCAGAACCCCGTGACCCAGACAGCGTTCCACTAACAGCAGACAGGATGCAAAATAAAACGGCAAGGATCGACACGGCCACCAAACAAGGCCAAGGACGG



gi|88561547|gb|CI492264.1|CI492264 CI492264 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G

GGAATGTTGTCTGGTTCAAGG
||||||.||||| |||| ||
CCTTACGACAGAACAAGCGCC

EST sequence (targeted fragment marked with yellow):
GCGCATTTCACCATCGTACAGTAAAAATATTAGAAAAAGACAATCACAAATAAAAAGACAATGGAAAAAAATCTANTGATATGAGCCCAGCCCCTTGCACAGGCTAATTACATAATGGCTGTTACTTCCTTTAACTACCTAGAGTGCATCGCCACTGGAAAAGCATCTGAATCACACCGCCCACCTACAGTTCACTTCATGCATTTCAGGCCACATTAAGGACCGCGAACAAGACAGCATTCCTGTGGCCCCATCACCAGTGGCATCCATTAGGACCTCGATCACTTACCTGTATGNAATATATCCTNCTGTTCCTTTTCCAACCTTCCTGATCATGCAACTCATGGTTTCGATAACTG



gi|86415037|gb|CI069440.1|CI069440 CI069440 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou

GGAATGTTGTCTGGTTCAAGG
|||||||||| ..||||||.
GCTTACAACAGTTTAAGTTCT

EST sequence (targeted fragment marked with yellow):
GAGAACCTAAACCCACATTTTTCCTTTGCCTATAATAAGATCTTTGCCGANTAAACATCCTACTACAAGCGGCCAAAATTTTTACTGAGCTGTGCACCGCTCACAACTGTTACAAATACAATTGAGGGAACGGCAATATCGTTCTATCTCCTGAAATGTAAATTGACAACAGTTGGCTGCATATATGTCTGCTGAATAGAAAGTGCGAGAGGGAAAAATGGGTGAAACAAGAAGGAAGATATTCTTTTTGCCCTGCTGTCAGAAGCACCAGAATCTGAACCTGGTTTTATCTTGAATTTGACAACATTCGGCTGTTTCACTGATATAAATTTTATTGGATGCTCTGTACAGTGTCTGTGCCGATCAATCGCTGAAATCAGCTTCTCATCATACCGAAACAATGATAGGTCAAAGTATGGCGAAGGACTTTGTGATTGACAAGTGTAAGGTAGTGACGCCATCATCTTTTTCACAAACTGCTGTGAGGTGCTGTTTGCTTTATTTTTAATTGTCCGAAGTTGATCGAGAGCATGAACAT



gi|88271823|gb|CI387876.1|CI387876 CI387876 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone

GGAATGTTGTCTGGTTCAAGG
||||||||||||.||| ||
ACTTACAACAGACTAAGAACC

EST sequence (targeted fragment marked with yellow):
GCAATCCAATTTCTCATACCATTTCATATGCATACCTAATTACAGATACCATCTCAGATTCAACTAATAACAGATAAAATCAGAATACAACAGAATTCAAACAATAGTTCATCTTAGATTCAACCTAATAACAGTCTCAGATACTTCCAGTATCAAACAACTAGTTCAACAGCCAAGCAACAAAAATTTGTGTAGCAGAACCAAGCTACCAACTTGTCCAAGAATCAGACAACATTCAAGTATACCCAATTTTGGTTCAACAAACTGGTGAAAACACTTGCAGCACCACAAAAATAAGCAGCAAAAAATTGCTGAACCAAAAAATCAGCAGCAACAAAGTTGCTGGTCCAAGTTCAGGTTCCCCCCACCAGCAGGACCTGCAGCACTGAAACGTGTGGTTTGATTCAGAAGCAAGGCAGGAAACGTTGAAAAAGACCTTGCCACACAAAATACCAACACAAATTAC