mature miRNA: GGAATGTTGTCTGGTTCAAGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|33663660|gb|CF294627.1|CF294627 30DGS--04-D21.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA cl GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGAAAGATAAAAAGTACTTGATCATTACTGATGATCATAAAATAAAGTACACTTCAGGAAGAAGGAATGACCTAAAATGGCTCCTTCAACAGAGGAAGAATAGGGCTAGACAAGGTACACAAAGGTAGGCAAGGCCATTGCCGTCATCGTTAACGTTGGCCTCGATCAGCTGTCTCCGTTCTGCTGCCCGAAGCTGCATGATCCTGAGGGCAAGAAGGAGAAGGGATTCTCANAGATGTCAAATCCAGGTCGAGTGAAGTCATCAAGCCCACCGAAGCAAGGATCAAAGCTCAATGGCGAGAAATAGCGTGGATCATCGGCCATCTTCATGTCAAGATTTGGGATGTCGTCCGATGAGCTACCGGNGGAAGTTATACCCAGCGCTCCCCACCATGGTGTTCATCGCCTCGCTGCCTTGAGGTTGCTCTGATGCTCCTGTTACTTTGATATCATCCATAGGGAGTGCAGGCGTGTGCCCTTGGAAAAGACAACATGCCCAAATAACTTGTCTTTTCT | |||||||||
gi|44667574|gb|CR281008.1|CR281008 CR281008 Oryza sativa library (Han B) Oryza sativa cDNA clone y790f01p3, mRNA sequence GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTGGAGGTTAATCACCGGATGATTAATAAAACCAAATTACTTGGTAAAGGCTACAGATCATCACCGGCTGATTCAATTAGTTAGGAAAAATAGATGAAAAAAAGAGAGAGAAAGGACTCGAAGTCTCCCAGCCTCGTCTGTATCGCCGTTGAACACAAGGACGCCACTTTTCCCCTGCGCGCACCGCCGTCCGTCGCCGTTGTTGGAATCCATGTCGCCGGATCCACTGCAGGCAACCTCCACCGCTGCTTTGCTACTCGCCGACCAGGCACCTGACGCACCTCCTCCTCCTCCTCTGCGCCAACCCCTTCTTCCTCGCCACCCACCTCCCCAAACACAACGCTCTCCACTTTCATCTCCTCCCCTCCATTGTTTGTTGACATCGGTGGCCAGATCCGTTTGACGTGAGCTCATAGACAGCGGATCCGGTGGTCCGGCGGATGGAGAACGGCGGGGACGGCCCGTGCAGCGAACGGGGATCGCGAGGACAAACTGCGGCGATAGGGAGACCGACGGACACAGGAGTTGGCACAGCGCGACCCTAACGGGGAAACACACGCGAGACAACACGCCCGTGCACGGAACGAGGGAAAAACGCCAGCAGAACCCCGTGACCCAGACAGCGTTCCACTAACAGCAGACAGGATGCAAAATAAAACGGCAAGGATCGACACGGCCACCAAACAAGGCCAAGGACGG | |||||||||
gi|88561547|gb|CI492264.1|CI492264 CI492264 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GCGCATTTCACCATCGTACAGTAAAAATATTAGAAAAAGACAATCACAAATAAAAAGACAATGGAAAAAAATCTANTGATATGAGCCCAGCCCCTTGCACAGGCTAATTACATAATGGCTGTTACTTCCTTTAACTACCTAGAGTGCATCGCCACTGGAAAAGCATCTGAATCACACCGCCCACCTACAGTTCACTTCATGCATTTCAGGCCACATTAAGGACCGCGAACAAGACAGCATTCCTGTGGCCCCATCACCAGTGGCATCCATTAGGACCTCGATCACTTACCTGTATGNAATATATCCTNCTGTTCCTTTTCCAACCTTCCTGATCATGCAACTCATGGTTTCGATAACTG | |||||||||
gi|86415037|gb|CI069440.1|CI069440 CI069440 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GAGAACCTAAACCCACATTTTTCCTTTGCCTATAATAAGATCTTTGCCGANTAAACATCCTACTACAAGCGGCCAAAATTTTTACTGAGCTGTGCACCGCTCACAACTGTTACAAATACAATTGAGGGAACGGCAATATCGTTCTATCTCCTGAAATGTAAATTGACAACAGTTGGCTGCATATATGTCTGCTGAATAGAAAGTGCGAGAGGGAAAAATGGGTGAAACAAGAAGGAAGATATTCTTTTTGCCCTGCTGTCAGAAGCACCAGAATCTGAACCTGGTTTTATCTTGAATTTGACAACATTCGGCTGTTTCACTGATATAAATTTTATTGGATGCTCTGTACAGTGTCTGTGCCGATCAATCGCTGAAATCAGCTTCTCATCATACCGAAACAATGATAGGTCAAAGTATGGCGAAGGACTTTGTGATTGACAAGTGTAAGGTAGTGACGCCATCATCTTTTTCACAAACTGCTGTGAGGTGCTGTTTGCTTTATTTTTAATTGTCCGAAGTTGATCGAGAGCATGAACAT | |||||||||
gi|88271823|gb|CI387876.1|CI387876 CI387876 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GCAATCCAATTTCTCATACCATTTCATATGCATACCTAATTACAGATACCATCTCAGATTCAACTAATAACAGATAAAATCAGAATACAACAGAATTCAAACAATAGTTCATCTTAGATTCAACCTAATAACAGTCTCAGATACTTCCAGTATCAAACAACTAGTTCAACAGCCAAGCAACAAAAATTTGTGTAGCAGAACCAAGCTACCAACTTGTCCAAGAATCAGACAACATTCAAGTATACCCAATTTTGGTTCAACAAACTGGTGAAAACACTTGCAGCACCACAAAAATAAGCAGCAAAAAATTGCTGAACCAAAAAATCAGCAGCAACAAAGTTGCTGGTCCAAGTTCAGGTTCCCCCCACCAGCAGGACCTGCAGCACTGAAACGTGTGGTTTGATTCAGAAGCAAGGCAGGAAACGTTGAAAAAGACCTTGCCACACAAAATACCAACACAAATTAC |