| mature miRNA: GGAATGTTGTCTGGTTCAAGG species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198193302|gb|FL904811.1|FL904811 CCGO2494.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO2494 5', mRNA seq GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GAGACACCTACACCATTTGCGAAGAGGATGGAGAAGTATTCCAGCTCCTCCAACTTGCCACACCACCTGGAGGTTCATTGGTTCTCGATTATAAACTCTTGTGTTACAGTCCTCCTCCTCACAGGGTTCCTTGCAACGATCCTCATGCGAGTACTGAAGAATGATTTTGTCAAGTATGCCCATGATGAGGAAGCAGCTGATGACCAAGAAGAGTCTGGATGGAAGTATATCCATGGTGATGTCTTCAGGTTCCCCAAGAATAAGTCGCTATTTTCCGCTGCTCTTGGCACAGGAACTCAACTATTTGCCCTCACAACCTTTATATTCCTGCTTGCTCTTGTTGGAGTATTCTACCCTTACAACCGCGGTGCATTGTTTACTGCATTGGTTGTCATCTATGCACTGACTTCAGGAATCGCTGGATATGTTGCTACCTCTTTCTACTGTCAGCTGGAGGGGACAAACTGGGTGAGGAATCTGCTGTTGACAGGATGCCTCTTCTGTGGACCTCTCTTCCTGACATTCTGCTTCTTGAACACAGTTGCTATTGCTTATAGTGCAACAGCAGCATTGCCATTTGGCACTATTTGTGTCATTGTGCTCATCTGGACCTTGGTGACATTTCCTTTGCTCGTTTTGGGAGGTATTGCTGGTAAAAACAGCAAAAGTGAATTCCAAGCTCCTTGCCGTACCACAAATACCCCAGGAAATTCCTCCACTTCCCTGGTACCGGAAAACATTCCGCAGATGGCTATGCTGGATTTTTGCCTTTCAGTGC | |||||||||
gi|198226033|gb|FL940490.1|FL940490 CCGP10668.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP10668 5', mRNA s GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): CTCATTAAAGAATCAAATTGAAAAGCTGCATCCTGGAATACGGTAAAATGGTATTTCTCCCAAAATCCAAGATCTACAAATCCATGACTGACAGGTCTAAAAGCATAGGTTCCAAAGGTACATAGAAGAGAATGCGCTGCTGATGATAAGGAAGCTTTGGTAGTTCCCATCTTGATGTTGTCTTGTGTCCCTTCAAACCTCCTGGACGGTCAAACCTGGGGGAAGAGATTGCTTCAACTTGATTGCCTTCTCAGCATCGAAGACGCAGAGGGTGTACAAGTACTTGGAGCAGCGCACCTTGAATTTGACAACATCCTTGCTCCTCTTGATCTTCACAGACCGGGCATCCTTCCTCCTCGCGGTGAGAAGGAAGTCCTTGATCTCATGGATCTGCTTCGGCATCTTCTCGTGAGACCGTGAGTCGCCGAGCTCTTCTTCTCGCGGCGGCGGCTGGGATCCCACGGGAAGAAGGAGTCGAAGATGTTGCCTACCTGAAACGATTCTCCGATCCATGCAGGCATGTATCTCACTCTCCGCCGCAGGTAATTCTCTAGATGATTGTGATAAACTTATTGAGTTGGTTGGTTCGTCCGAATCTGGAATGCTGCATTTGTTCAGCCAGCAACAGTTACAGGAATTCCTGATTTTCGAGAGGGAATGCTTGATATCTAAAATGGAGCTTGAGGAGGAGCAGTTATCTTCTGATAGCTAAGTCTTTCATGTTCTCAGAGAATCACTCCCAAATCACTGGCGTGTTTTGATAACCGGTGAATCACTTTCAGATCACTGCTGCAGATTCAGGAGCCATGACCC | |||||||||
gi|304517192|gb|HO312175.1|HO312175 CFHA2433.b1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA2433 GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GCCTGCCAGTGTTGCTGAGTCCGCTGTACCTGCTAGCCTTGGAGTGGCTGCTGGGCCTGCTGTACTTGAAAAAGTCCAAGAATTGGCTCCGCGGAATGGATCTTCTGCTGCTGAGAGCACAAACTCCGACAGCCTGCCAGATCCACTGAATAAGCGTTTGGAGCAGCTTGTCAATTCCCATCCTGTATTTCTGTTTATGAAGGGAACCCCTGAGCAACCAAGGTGTGGTTTCAGCCGTAAAGTGGTTGACATTTTGAAGCAGGAAGGAGTCAACTTTGGGAGCTTTGATATTCTCACAGACAATGATGTGCGTGAAGGAATGAAGAAGTTCTCTAACTGGCCCACTTTCCCTCAGCTCTACTGCAAAGGTGAGCTGCTTGGTGGATGTGATATTGTTATTGCTATGCATGACACTGGTGAATTGAAGGATGTTTTTGAGGAGCACAATATTCCCTTCAAACCACAGGGAAGCAAAAGCGTTGAGGCAGTGGAACCTGAGGCTCCGTCTGGAAAAGCTGGTGCAGTTTCTGAACCAGTCGGGCTTACTGATGCACAGAAAGCTCGTTTGGCAAGCCTTGTTAATTCCAGTCCTGTGATGGTATTTATCAAAGGTTCACCTGAGGAGCCAAAGTGTGGGTTCAGTGGGAAGTTGGTTCACATCCTTAAGCAAGAGAACATTCCTTTCTCCAGTTTTGACATTCTGTCAGATGATGAGGTTAGACAGGGTCTGAAGGTTTTCTCAACTGGCCTAGTTACCCTCAG | |||||||||
gi|169669913|gb|FE598347.1|FE598347 CBYX1561.b1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX1561 5', mRN GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): ACATATTTGAAATAATTGAAGAGGTTGAATTTGCTGGTGTTGACCCTGATGACCTGACAAGCCAATTCTACAGCGACATCGCCATGTTGGTCTCATCATCAATGTCTGTTCGTGAAAGGCCATCTGAAAGAGCACATTTTGAAATTTTGCATGCAGAACATAGTGCCATCAAATTGAATAATGAGAATTCAAGTATTCACATTGATGCTGTCATTGATCCGCTAAGTCCCACTGGGCAAAAACTTGCCCCACTTCTATGCATACTCTGGAAACAGATTCAGCCCAGCATGAGGATTGTACTTAATCCTATTAGTTCCCTCGTAGATCTCCCCTTAAAGAACTTCTACAGATTTGTTCTTCCATCAATGGATGATTTTAGCAATACAGATTATTCTGTACATGGGCCTAAAGCATTCTTCGCAAATATGCCACTTTCAAAAACACTTACAATGAACATAGATTGTTCCATAACCATGGCTTGTTGAACCAGTTGTTGCCATCCATGATTTAGACAACATTCTTTTAGAGAATCTCGGTGATGTTAGAACTTTGCAGGCAGTATTTGAACTTGAAGCTCTCCTCTTGACAGGTCACTGCATGGAAAAAGACCGAGACCCTCCCCGTGGTCTACAGTTTATCCTTGGTACAAAACAAAGACCACACATGGTAGACACACTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAAGTCTCCCCTGGTGTATGGTACCTACAATTGGCTCCTGGCCGTAGTGCCGATCTA | |||||||||
gi|254545397|gb|GR880494.1|GR880494 SW_H39_R9_F23_092_1 cDNA library of switchgrass vascular tissue derived by LCM Panicum virga GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): CATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACAGGCATAAGTATAAAGTAATGTGCAGTTAAACAAGAAATATACTGAAAGGTGCATCCTTGAACGAGGTAAATTGGTATTTCTCCACAAAAATGCAAGATCCACACATCCAACACTGACAGGTCTAATAGCTTAGGTTCCAAAAGTACATGAGTAGCATGCTCTGCTACTGATAAAGAAGCTTGGGTAGTTCAACCCGGCGTTGCCATGTATCCAATCAGACCTCCTCGACGGTCAAACCTGGGGGAAGAGATTGCTTCAACTTGTTTGCCTTCTCAGCATCGAAGACGCAGAGCGTGTACAAGTACTTGGAGCAGCGCACCTTGAACTTGACAACATCCTTGCTCCTCTTGATCTTCACTGAGCGGGCATCCTTCCTCCTCGCGGTGAGGAGGAAGTCCTTAATCTCATGGATCTGCTTCGGCATCTTCTCGCGGGACCTGGGAATCGCCGAGCTCTTCTTCTAGCGGCGGTGGCTGGGATCCCACGACAGGATGGAAATGCGGAGCCCC | |||||||||
gi|198341899|gb|GD010615.1|GD010615 CCHZ3881.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): TGTATTATCAAAGGGTCACTGAGAGCCAAAGTGTGGGTTCAGTGGGAAGTTGATTCACATCCTTAAGCAAGAGAACATTCCTTTCTCCAGTTTTGATATTCTGTCAGATGATGAGGTTAGACAGGGTCTAAAGGTTTTCTCAAACTGGCCTAGTTACCCTCAGCTATACATAAAAGGTGAACTGATTGGTGGTTCTGACATAGTGATGGAGATGCATAAGAGTGGTGAACTGAAGAAGGTCCTGTCTGAGAAAGGGATTATAGCAAAGGAAACTCTCGAGGACAGACTGAAGGCCCTGATTTCTTCAGCTCCAGTGATGCTGTTCATGAAGGGCACCCCAGATGCTCCTCGTTGCGGGTTCAGTTCGAAGGTTGTGAATGCACTGAAGAAGGAAGGGATCAGCTTTGGGTCCTTTGACATCTTATCCGATGAGGAAGTTAGACAAGGTCTGAAGGCATACTCCAATTGGCCTACTTTCCCTCAACTGTACTACAAATCGGAGCTGATAGGTGGTTGCGATATCATTCTTGAGATGGAGAAGAGCGGAGAGCTGAAGTCGACCCTGTCAGAGTAGGCGCATTGCGTTTGTCTCGCTGGCGTATCTAGTGTCTGGCCAGAGTTGAATTGTGCTTAGATTGCATTTATGCCGATGTATTCATAGATCCACGTTTGAGACATCTGTCCGTGCCACATTACTAGAATTGTGACGTCTGCAGAAGGAATAACATGAAACGGATTTGGTACCG | |||||||||
gi|254542312|gb|GR880383.1|GR880383 SW_H39_R9_A07_032_1 cDNA library of switchgrass vascular tissue derived by LCM Panicum virga GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAGGTGCATCCTTGAACGAGGTAAATTGGTATTTCTCCAAAAATGCAAGATCCACACATCCAACACTGACAGGTCTAATAGCTTAGGTTCCAAAAGTACATAGAGTAGCATACTCTGCTACTGATAAAGAAGCTTTGGTAGTTCAACCCGACGTTGCCATGTATCCAATCAGACCTCCTCGACGGGCAAACCTGGGGGAAGAGATTGCTTCAACTTGTTTGCCTTCTCAGCATCGAAGACGCAGAGCGTGTACAAGTACTTGGAGCAGCGCACCTTGAACTTGACAACATCCTTGCTCCTCTTGATCTTCACTGAGCGGGAATCCTTCCTCCTCGCGGTGAGGAGGAAGTCCTTAATCTCATGGATCTGCTTCGGCATCTTCTCGCGGGACCTGGGAATCGCCGAGCTCTTCTTCTAGCGGCGGTGGCTGGGATCCCACGACAGGATGGAAATGCGGAGCCC | |||||||||
gi|198289729|gb|FL954381.1|FL954381 CCHY1322.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY1322 5', mRNA s GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): CTCCCATCGAAGAAGGGGAGTTACCAGCTTAGGAATGGTTGGATGAGGTTCTGCAAGGAGAACAGCCTCAAGATAGGAGACATCTGCACCTTCAATGTCATCGAGACCACAATGTGGCACGTTGTTGTCACGCGGTGTAAGGAAAAGATGAATCAGTTCTGTTATGTGAGTTAGTACTGAAACACCTCTCCTTTTATCCTATGAAACATCAACATTAACACACATCAAAACAGCAGGAATATCCTTCTATTTCCAGTCGGATGCATATGAGCAAGAGCAAGTGGCCAAGAAGTAGAAGGAACAAGAGATCAAATGGCTCCAGGAGTTTTTTGAACAAGACAGCATTTCACAGGAAATCTTTCTATGAGATTGGGCCCCCATCTTGGATAAAGAAAGTGATCAACGCCCACACCCTTGAAAAGTATCTTGCTTTGGCAACAAGTTTTTGTGATGCGATTGGGTTGCGGGAATCATGTATGATCACACTTAAGACGTCAATGGACAGTACCATATCTCGGCAGGTGCGTGGTATCTCAATCAAGAATTGTCGCAGCTACCTGCTTATAAAGGGCTGGAGGAGGTTCTGTCAGGAGAACAGTCTCAAGAAAGGTGACATCTGCACCTTCAATGTTATCGAAACCACAGTTTGGCATGTCATTATCACGCGCTATAAAGAAAAGATAGATCAGCCCTGCTATGAAAAACCTTCGGCTTCTAGTATGAGC | |||||||||
gi|198383626|gb|GD047792.1|GD047792 CCHZ28447.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): AGAGCACATTTTGAAATTTTGCATGCAGAACATAGTGCCATCAAATTGAATAATGAGAATTCAAGTGTTCACATTGATGCTGTTCCTGATCCGCTAAGTACCACTGGGCAAAAACTTGCCCCACTTCTACGCATACTCTGGAAACAGATTCAGCCGAGCATGAGGATTGTACTTAATCCTATTAGTTCCCTTGTAGATCTCCCCTTAAAGAACTTCTACAGATTTGTTCTTCCATCAATGGATGATTTTAGCAATACAGATTATTCTGTACATGGGCCTAAAGCTTTCTTCGCAAATATGCCACTTTCAAAAACTCTTACAATGAACATAGATGTTCCAGAACCATGGCTTGTTGAACCAGTTGTTGCCATCCATGATTTAGACAACATTCTTCTAGAGAATCTCGGTGATGTTAGAACTTTGCAGGCAGTATTTGAACTTGAAGCTCTCCTCTTGACAGGCCACTGCATGGAAAAAGACCGAGACCCTCCCCGTGGTCTGCAGTTTATCCTTGGTACAAAACAAAGACCACACATGGTAGACACACTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAAGTCTCCCCTGGTGTGTGGTACCTACAATTGGCTCCTGGCCGTAGTGCCGATCTATATGAGCTACCTCCAAAACTCATTGCCATTGATAGCTTGAGAGGAAACTAATGCACATTGAAGTGCAAAAGAAGAAAGGCAAGGAGCGTGAGGAGTTACTAAATGCTGCGGATGACTACCACTTTCAGGAAAACATGGATAACA | |||||||||