| mature miRNA: GGAATGTTGTCTGGTTCAAGG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|37709487|gb|CF760262.1|CF760262 DSAF1_57_E05.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_57_E05 GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTCGTTGAACGAGGTAAATTGGCATTTCTCCAAAAATTCAAGATCCACAAATCCAACACTGACAGGTCTAATAGCTTAGGTTCCAAAATTACATAGAATAACATGCTCTGCTACTGATAAAGATGCTTTGGTAGTTCATCTTGACTTTGTCATGTATCCAATCAAACCTCCTGGACGCTCAAACCTGGGGGAAGTGATTGCTTCAACTTGTTTGCCTTCTCAGCATCAAAGACGCAGAGGGTGTACAAGTACTTGGAGCAGCGAACCTTGAACTTGACAACATCCTTGCTCCTCTTGATCTTCACTGAACGGGCATCCTTCCTCCTCGCGGTGAGAAGGAAGTCCTTGATCTCGTGGATTTGCTTCGGCATCTTCTCGCGAGACCTGNGAGTCGCCGAGCTCAGCTCTTCGTCTCGCGGCGGCGGCTGGGCTTGGGCAAAAGGACATCTGTTCCATCAGTTTTTGCTGA | |||||||||
gi|45967311|gb|CN135236.1|CN135236 OX1_31_B02.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_31_B0 GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): CAAGAGCTTCATTCACAACCTCAATTACCCCTTCACACTTTAAACCCAACAACAACAACAGAGCTTCTTCTCACACAATCACTCAAAATGTACACTTCAACCATCGCTCTCGCTATTGCTCCCCTTCTCTACCTCGCCCGCGCAGACGTCAGTCTTGACCGGGACGACATTCCACGAGAATGCGACACCATCTGTGATCCAATTGTTTAGCTCACCAAGACATGCGACACTGACCTCCGTGGCGATCGTGACCGCGAGGAAGATCGTCTTGAGGTTCAGTGTGTCTGCACCAACGACTCTTTCAACGTTAGCCGTGTCGCTGCTCTCTGCGCCGGCTGCATTCACCAGAATGCTCAAAACAACCGGGATGACGATGACGACGACGATGATATCCGTGATGACACTGAGGAAATTGATGATATCATGTACACCTGTGGTTTCTCATCTACCACCTATGTCGCATCCGCCGCCTCAGCTGCTGTCTCTGGCGTCTCAGTCGATGCGACTCGACCTACAAATGCGTCGCAGTTGACCACCACCATTGTTGGCGGTACACGAACCCAGAACTCCAACGAGCCTTCTGCTACCGGTACCAGCGGTGGTAATGGAAGGGTAAGTGGAAGCAACGACGACNACAACAATGATGCTTCTGCTACCAACGATGCTTCTAACCCCGACGAGACCAACGCTGCTGCTGCCATGGCACCTTA | |||||||||
gi|33109067|gb|CF072408.1|CF072408 FE1_2_F05.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_2_F05_A002 5', mRNA GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): CAATGAACTAGATGTTCCAGAACCATGGCTTGTTGAACCAGTTATTGCCATCCATGATTTAGACAACATTCTTTTAGAGAATCTCGGCGATGTCAGAACTTTGCAGGCAGTATTTGAACTTGAAGCTCTCCTCTTGACAGGTCATTGCATTGAAAAGGACCGGGACCCTCCCCGTGGTCTGCAGTTTATCCTTGGTACTAAACAAAGACCACACTTGGTAGACACACTTGTCATGGCCAACTTGGGTTACTGGCAGATGAAGGTCTCACCTGGTGTGTGGTACCTACAACTGGCTCCTGGTCGTAGTGCCGATCTGTATGAGTTACCTCCAAAACTCATTGCCATTGATAGCTTGAGAGGCAAACTAATGCACATTGAAGTACAAAAGAAGAAAGGCAAGGAGCACGAGGAGTTGCTAAATGCTGCCGATGACTACCACTTCCAGGAAAAGACGGATAACAAAGGCTGGAATAACAACCTTTTGAAATGGGCTTCTAGTCTTATCAGTGGTGATGCATCATCCAAAAACAAAGCTGATAAAATCACCGACCGTAAGGATGCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCTTCTGGGCATCTGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAGAGACACAGAGGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGGATGTCATACCGCACATGGCTCGGGAATATGGATTTGAGTATGAGCTCATCACATATAAATG | |||||||||
gi|30978566|gb|CD235101.1|CD235101 SS1_21_H10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_21_H10_A012 3', mRN GGAATGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GACGGGGTTATTGTTTCTGAATTCTGATTGATGTCAGGGGAGTAAGGGAAACACAGCTAAACTACTGGTCGAACACAACCCCTCACGGGACACAACAAGTCACCTACGATTGGCACTCTTGCCGTTCGATTATTTCTTAAACTACATGATGAAACTGGAAAGAGTCTCCAGGTCCAAGGATGCTCGGGTGGGTGCTTGGGTGCATTCTCAATCCCCAAAACGGAGCCCCAGCATGACTAGCAAAAGCACATCATTCTGCTACACTTAATTCCCGGTCAATCTCTTCAAGTGATCGCCCCTTGGGCTCGACCACATTCCCAGCTATGTAAAAAACTGCAAGGGCGCACACTGATGCAAATCCCAAATATACATTGCTGATCCCCAACTTGTTGA | |||||||||