| mature miRNA: GGAATGTTGTTTGGCTCGAGG species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188363019|gb|EY748256.1|EY748256 CS00-C5-003-056-D07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se GGAATGTTGTTTGGCTCGAGG EST sequence (targeted fragment marked with yellow): CACCCACGCGTCCGGCTCAAATGACTATATTTTATGGCGGACAAGTGATTGCGTTCAATGATTTTCCTGCTGATAAAGCAAATGAAATCATGCAATTAGCAAGCAACGGGAGCTCACTGAGCCATGGTACCGCATATCCTCCTATGCAACTGCCGGCCCAGGGTTACAACTCTTTTGCTGCTAGTTTACCCAAAAGTCCAGTTGAATCAACTCCCCCGGTTTCTCCTGGCCCCCCAAAAATTCTAACAGAGCCTAGTTGCTCGGTTCCTCCTCGATCAAATAGCATTCCTAACTTTGGCAACAATCTAATTCCAGAGTGCGCTCAACCTCCCTCAAGACCTTGTGATCTACCAATTGCAAGGAGAAATTCACTCCACAGGTTCTTGGAGAAGAGAAAAGACAGGATTGTTGCAAGAGCACCGTACCAAGTGAATGGCTCAGCAGGGGCTCCAAACAAGCCCCGCTGATACCAAGTCATGGCTTGGCCTGGCTGCTCAACTTCACAATAGTTTGTGCAATTTGCATCCAATTTAGGGAATGATTAATTGGCCGGGCCTCCCCTTTTTGGAAAAACTAAACCCTTGCTTTCGTTTTTCTTCATCTTCCACCTCCTTTTAAGGCAGGGGCTTAAATGAGCACACCAATAAAAAGAACTACCCTTCTTCTTAACCATAAATTTTATTGTAATAAACCACTTTCACGAAAAATCTCAAAACAGCAAAACACCCAAAAAACAATACAAACCAACACTACAACACAAAATAAAAACGGCAGAACCACACAAAAACAAAACAACCATATAACACAACAAAAACACAAAAACAAACAAAATCAAATTAAAACAAACCATCCAAACAACAAACAAAAAACCACCAGACCAATCCTCACACTACTCCCAGCCACACGCCCGACCACACAAACACCACAAACGCACACTGGACTGACACCAAACCCAAAAATATCAAGCCCTTACCAAT | |||||||||
gi|188451881|gb|EY740765.1|EY740765 CS00-C3-705-076-F04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD GGAATGTTGTTTGGCTCGAGG EST sequence (targeted fragment marked with yellow): CACGCGTCCGCGGACGCGTGGGAAGCAAATGAAATCATGCAATTAGCAAGCAACGGGAGCTCACTGAGCCATGGTACCGCTTATCCTCCTATGCAACTGCCGGCCCAGGTTTACAACTCTTTTGCTGCTAGTTTACCCAAAAGTCCAGTTGAATCAACTCCCCCGGTTTCTCCTGGCCCCCCAAAAATTCCAACAGAGCCTAGTTGCTCGGTTCCTCCTCGATCAAATAGCATTCCTAACTTTGGCAACAATCTAATTCCAGAACGCGCTCAACCTCCCTCGAGACCTTGTGATCTACCAATTGCAAGGAGAAATTCACTCCACAGGTTCTTGGAGAAGAGAAAAGACAGGATTGTTGCAAGAGCACCGTACCAAGTGAATGGCTCAGCAGGGGCTCCAGACAAGCCTGCTGATAGTAAGTCATGGCTTGGCCTGGCCGCTCAAACTTCACAGTAGTTTGTGCAAATTGCATCCAGTTTTAGGGACTGATTATTGGCCGGTCATCGTCTTTTTGGCAAACATAAACCTTGCTTTGTNTTTCTTCATCTTCCATCTTCTTTTAGGTTTGGGTTTTGATGAGCCCACCATAGATCTGACGATCATTCTTCTTACCAATAGTTTATGTAATTAACTTCTTTATTGAAAATTTAGTTAATGTTATCCCAATGAATAATTCTAAGTGTGGACTCTTTCTTCAGTCAATATTTGAATCTTCAAAAAAAAAAAAAAAGGGGGG | |||||||||
gi|188452632|gb|EY740771.1|EY740771 CS00-C3-705-076-F11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD GGAATGTTGTTTGGCTCGAGG EST sequence (targeted fragment marked with yellow): CACGCGTCCGCAGCGCACTAGTTTTATTTTTAAAATTTATTTTTGCTTGTGGGTTTCCGCTTCTGAGTTGGTTAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACATTGAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTATGAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGCTCGAAACATGGCAGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAACAAGCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTTTAAACAAGCCCGCTCCGCAAACTGCTCAAATGACTATATTTTATGGCGGACAAGTGATTGTGTTCAATGATTTTCCTGCTGATAAAGCAAATGAAATCATGCAATTAGCAAGCAACGGGAGCTCACTGAGCCATGGTACCGCTTATCCTCCTATGCAACTGCCGGCCCAGGGTTACAACTCTTTTGCTGCTAGTTTACCCAAAAGTCCAGTTGAATCAACTCCCCCGGTTTCTCCTGGCCCCCCAAAAATTCCACAGAGCCTAGTTGCTCGGTTCCTCCTCGATCAAATAGCATTCCTAACTTTGGGCACAATCTAATTCCAGAACGCGCTCAACCTCCCTCGAGAACTTGTGATCTACCAATTGGAAGGGAGAAATTCATCCCCGGTTCTTGGGAGAAGAGAAAAGAAAGGAGTGTTGGCAGACCACCGTACCAGTTGAATGGGTCATGAGGGGGCTCCGAA | |||||||||
gi|229046372|gb|GO242525.1|GO242525 1173 'Cara cara' navel orange fruit cDNA library Citrus sinensis cDNA clone 1347 5', mRNA se GGAATGTTGTTTGGCTCGAGG EST sequence (targeted fragment marked with yellow): GATTCATGGACCGAATCAAGCCTGAAGGCATTCCTTGACCACAACAACATTCCAAACCCTCAACCACGAAGCAGAGACAAGCTCCTCACTACTGCACGACAGAACTACGATGCCATCGCTAAGAAGGCCGGTGAATACGCTGCATACCCTGGTGATTGGCTCTATCAATCCTGGTCTGAATCTGATCTGAAAGAATTCTTGGACAGTCGAGGTCTGCCAGCTCCACAGCCCTCAACCAGAGATAAGCTGATCGCCTCTGTTCGCCGAAATGCCAGACTTGCGAGCCTCAACATGGACTCTGCCCTCTCATCTGCCTCCAAATCTGCTACCAGTGCCACATCTGTCATTGCTGCTTCCGCCTCGAGTGCTCAAGCTGGCTTGAGTGACAGTTTGTTCGACGCATGGTCTGAGAGCAAGCTCAAGGAGTTTCTTGACGAACATGGCATCCCTGTCCCACAGGGAAGCAAGAAGAATGAGCTCCTTGCCCTCGCACGCAAGAACAGAGCCTCTCTGACCGGCAACGCCGCATCCACTGCCTCTGGCTCAGCTGCCTCAGCCTATGGTGCTGCTACATCTAGCGCAGGCAACGTGTACGCTCAAGCTACTGACGCCGCAGCAGCCAAGGTTGATGATATCTTCCAAGCAGCTACTAACACCTGGTCTGAGTCTCGTCTCAAGGCTTTCCTTGACTCTCGTGGCGTCCCAGTGCCTCAAGGTGGATCCCGCGATGAACTCCTTGCCTCAGTCAGACTAAACAAGCATAAGGCTGCTACTGGCTACTCCGCTTGACCTTTGACACCTGACCACTGAGACCTTCAAAAATACCTCGACTCCCAAGAAAGAGCTAGAGGTGCAGTCAGCGTGACGAGCTTGTTAGCAGCTCAGACACTACGCTTCTGCTTCAG | |||||||||
gi|188297818|gb|EY736353.1|EY736353 CS00-C3-705-015-C07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD GGAATGTTGTTTGGCTCGAGG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCAAATATGTTATTATTCCTCGTGTTCAATCAACAGATAAGGCTTTTTCTCCTTACAAATACAGATTGATCATCCAACAGAACAACTTCACCAATTCAATTCTGCAGCGTCAGTTGCAGCGCACTAGTTTTATTTTTGCTCGTGGGTTTCCGCTTCTGAGTTGGTTAAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACATTGAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTATGAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGTTCGAAACATGGTGGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAGCAAGCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTTTAAACAAGCCCGCGCCGCAAACTGCTCAAATGACTATATTTTATGGCGGACAAGTGATTGCGTTCAATGATTTTCCTGCTGATAAAGCAAATGAAATCATGCAATTAGCAAGCAACGGGAGCTCACTGAGCCATGGTACCGCATATCCTCCTATGCAACTGCCGGCCCAGGGTTACAACTCTTTTGCTGCTNAGTTACCAAAAGTCCAGTTGAATCACTCCCCCGGTTTCTCCTGGCCCCCAAAAATCTAACAGAGCCTAGTTGCTCGGTTCCTCCTCGATCAAATAGCATTCCTAACTTTGGCAACATCTAA | |||||||||
gi|188437644|gb|EY702898.1|EY702898 CS00-C3-701-013-E08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD GGAATGTTGTTTGGCTCGAGG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAATTGAAAGAGTTGGAGGGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGCACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTGGCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCATAACTGTCAAGCCGACAGACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGAATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGGGAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAGATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAATCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGATCATTAAGATTGAAGCACCCATTCACAGCTCAAATGTGATGCTCTACTCAAAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGGAACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTGAAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTAGCTACTGCTGCTTAAAAATCCCCACTCATGACTTCACCTGTAACGTAGTTTCTGAAAGTTCTTTAGTATCTTGGCCACATGTCCAATTAGTTTATTATAGCTTTGTTGATTCCCATTTCCCTGGAGTTAAATAGCATTCTGGTTTTTGGTTGGCCAACTGCAAACTAAACATGATTTTGAAAGCCGACTTGTAAGTTGTTTACACTGTACTTTGTGCAATCTGAGATATAATTGCCGTGCCCAGAGAAAAAA | |||||||||
gi|188227663|gb|EY690661.1|EY690661 CS00-C2-003-096-C04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ GGAATGTTGTTTGGCTCGAGG EST sequence (targeted fragment marked with yellow): AATTGAAGGAGTGAAAATAAATATTGTTTTTTTGTCTTTTGATGTCAGTTCAATGAAAAATATACTTATAATGAAGATGAGATCAACGAAATTCACTCTGATTGGACCACTTATGTTAGTGACTTGATTTGAAAAAAAAAATGCAAAAGAGACAAGTAATGCAGGTAAATAGCATATGATTCAATTGAAGTACATTACTTTATTGTTAATATTTTTCATGCATAGGTTTTTCCTTCTCTTTGTGCCTCGATATCTTATGCTTTCATTGCACCCAGCAACTCTATCCTCTCGTTGCCTTGGGCCTGGAAGGTATCAATCCGCTCCCCCCACCGCTAGACCGGCGCGGACAGGACCCCCTCGCGAACCCGAAGAACGCGAGTCCCCCGCGGGGGGGGGGGGGGGGGCCCGAGCAGCGCCGCACACCAGCACCCCAGACCGCCACCGGCGGCCCCCCGACAACAACGGAAAACCGGCGCCCGCCAGACAACACCCCAACGGACCCCCGGACCCGCCACACACCACCAACCCGCCACCTAACGGCCACCGGCCGCCCACACCCACACCGCGCGCCGCCCCGCAGAGCCCGCCGCCGCCCAACCCGGCAGCCCCGCCCAACCCGCGGCCGGGCGGCGCAGCCGCGGTGGCCAGCGGGCGGGCGGGCACGGAGCCCGGCCCGCGGGCGGCGGCGGAGCGGCGGGGGGCGAGGAGCGGCGTGAGGGGGAGGGGCCGGCGGGCGAGCAAGCGACGCGGGCCGCGGCGGCGACGCGCGCACGGACGAGACACACGCATACCCGGCACCCACGCCGCGCAGCCGAAGCCGCACCCGCGCGGCCCCGCAGCCAGCCGCGGCGAGCCCAGACACGAGCCGAACAACAATCCGGCGGACCGCTCAACGATACAGACGGCGACGGACCAGCGGGACAGACAGCGACGCGAAGGCCAACACGCAGGAGGCCAGACGCGGGTAAGCCGCGCACCCGCGAGGCACC | |||||||||
gi|188284327|gb|EY739731.1|EY739731 CS00-C3-705-061-E06-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD GGAATGTTGTTTGGCTCGAGG EST sequence (targeted fragment marked with yellow): CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCAGTTGCAGCGCACTAGTTTTATTTTTGCTCGTGGGTTTCCGCTTCTGAGTTGGTTAAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACATTGAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTATGAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGTTCGAAACATGGTGGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAGCAAGCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTTTAAACAAGCCCGCGCCGCAAACTGCTCAAATGACTATATTTTATGGCGGACAAGTGATTGCGTTCAATGATTTTCCTGCTGATAAAGCAAATGAAATCATGCAATTAGCAAGCAACGGGAGCTCACTGAGCCATGGTACCGCATATCCTCCTATGCAACTGCCGGCCCAGGGTTACAACTCTTTTGCTGCTAGTTTACCCAAAAGTCCAGTTGAATCAACTCCCCCGGGTTCTCCTGGCCCCCCAAAAATTCTAACAGAGCCTAGTTGCTCGGGTTCCTCCTCGATCAAATAGCATTCCTAACTTTGGCCAACATCTAATTCCAGAGTGCGCTCAACCTCCCTCAGAACTTGTGATCTACCAATTGCAAGGGAAAATTCACTCCACGGGTCTTGGAGAAGAGAAAAAAAGGATTGTTGCAAGACCCCGTA | |||||||||