| mature miRNA: GGAGATGGAGAGCTTACTCC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52382622|gb|CV229790.1|CV229790 WS01914.B21_G21 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_G21 3', mRNA sequence GGAGATGGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): GAGGTCGAAATATAACCTACAGGAACCTGACATTTGACGATGTAAGAGTTGGAATTGTTATCAAGACAGACTACAATGAACACCCTGATGAGGGTTATGATCCAAAGGCTGTTCCAACACTCCAGGACATAAGCTTCAGTGGAATCCATGGCCAAGGAGTTCGTGTGCCTGTTCGCATACATGGGAGCGAAGAAATTCCAGTTAGGAATGTGACTTTTCAGGATATGTCAGTGGGGTTAACTTACAAGAAAAAGCATATATTCCAGTGCGCCTTTGTTCAAGGTCGTGTTATAGGGACGATCTTCCCTGCTCCATGTGAAAACCTTGATCGATATGATGAGCAAGGAAAGCTGGTTAAGCTCTCTGTCTCCCAAAACATAACAGACATAGATTATGATTTTTGACACGTCAACACATCTCAACTCCCCTTAACCTTTCTGAAGGCCAATGACATTGTATGACTGTATCAGACCAGCCAGACAGATGACGTTGGTGCAGTTCAGCTTCTTCTTATGGTGTTCTAATGCCACCATGTTTGCTCCAATTTTATAGCTTGCTTCATTTGTATATACAGATTTTCATACATTTCTAAGGTTTGTGAAATGCATAGCATTACAATTACAATTACAAGAAAAACTAAATCGTGCGGTTGTTCTACTGTATATGACAAGCGCTATGCATGTCTCTCAATGATTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52375156|gb|CV226108.1|CV226108 WS0163.B21_E24 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_E24 3', mRNA sequence GGAGATGGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): CGCCATGCAAGAATTTTACCCGCAGTTCCTCCACCAGCATCCATTGGCAGCTCCACCAGCTCTTGTTCCAGCTCCAGTTCCCAGCAAGCATAAGTTGAAGTATCCAGATCCATTTCCTGTGGCATTGAGTTCTCCATCTCCACCATCTGGCGGTCCTGATCCAAGTTTGGGTGCTTCCTTTCCCGGACCCGCTGGAACCGATATGAGTGGAGTAGAGAAGATGGGGTCCGTGCAGAAGAAGGTCCTGAGCCTGGTCTTTGGATCAGCTTTCTGGTTGTTAATTTAGACATATCATCCTGGTGTATCAGTTTTTAATTTTTTTTTTTAATTTTCGCTGTTGTCTACATATATTACTGGTTACCATTTTAGCCCCTCCGCGGTGAAGAGATCTTTTATTACCAGTACTTGAACCATATTTTATACATTAGGTTGGATTCTTTGGGGAGATTTTTGAGGGAAGCTTTTGTTTTTGAGGGGAGTGCCTGAGGGGAGTTGTTTTGTATTTGAGATTGTTGATAGTTACCTCTCTCTTTCTCTTATAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884281|gb|DT487019.1|DT487019 WS02532.B21_J01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_J01 3', mRNA sequence GGAGATGGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): GGTCAGTGCCGGCATATCAATTGGCAGTGAGATGTCAGGTGGGGTATCAAGTGTTACCGTGGAGAACCTCCTTGTGTGGAGCTCAAGGCGTGCAGTTCGGATCAAGACTGCCCCTGGAAGAGGTGCATATGTTCGAAATATAACCTACAGGAACCTGACATTTGACGATGTAAGAGTTGGAATTGTTATCAAGACAGACTACAATGAACACCCTGATGAGGGTTATGATCCAAAGGCTGTTCCAACACTCCAGGACATAAGCTTCAGTGGAATCCATGGCCAAGGAGTTCGTGTGCCTGTTCGCATACATGGGAGCGAAGAAATTCCAGTTAGGAATGTGACTTTTCAGGATATGTCAGTGGGGTTAACTTACAAGAAAAAGCATATATTCCAGTGCGCCTTTGTTCAAGGTCGTGTTATAGGGACGATCTTCCCTGCTCCATGTGAAAACCTTGATCGATATGATGAGCAAGGAAAGCTGGTTAAGCTCTCTGTCTCCCAGAACATAACAGACATAGATTATGATTTTTGACACGTCAACACATCTCAACTCCCCTTAACCTTTCTGAAGGCCAATGACATTGTATGACTGTATCAGACAAGCCAGACAGCTGACGTTGGAGCAGTTCAGCTTCTTCTTATGGTGTTCTAATGCCACCATGTTTGCTCCAATTTTATAGCTTGCTTCATTTGTATATACAGATTTTCATACATTTCTAAGGTTTGTGAAATGCATAGCATTACAATTACAATTACAAGAAAAACTAAATCGTGTGGTTGTTCTACTGTATATGACAAGCACTATGCATGTTCTCTCAATGATTTAATTTAATTTTTTTTCATTGTGGTCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|52393834|gb|CV235350.1|CV235350 WS01218.B21_M16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01218_M16 3', mRNA sequence GGAGATGGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): ATATCGTGCCATCGACATCTTTTTAAAAGGTCATCCGAATCTTTGATGAGATAGAACGGGAGAAGGTTTGCAGTGTTATGGACCCATTGAAACTGTCCTATGAAGCTCGACTCCATGCTTCTCAAAACAAAAGATTACCAGTACAGATTGTTTTGCATGCACTTTACTATGATCAGCTTAAACTAAGGAGTGGTGTGAATGACCAGCCTGATGCTGTTGCAACAAGGAGTCAATTGCAGTCTGATGTTTCACTTGTCAGAGAGAATGAGGCCTTGCGGTCAGAGCTTATGAAGATGAAGCTTTACATCTCAGACATGCAGAAGAATCAAGGGAGTTCAACTAAGGGTATTGCAGCTGCAGCTGCTCCGACGACTACTGGATCTCGAAAACACTCCTTCTTCTCATCCATGTCGAAAACATTAGGGAAGTTGAATCCTTTCAAGCATGGATCTAAAGATACCTTTCATATTAATGATAACATCGGTGTGGATATTACCAAGCCTAGGAGGAGAAGGTTCTCCATATCTTAGAAGTTAAAACTTGCTAGTTAATTACCTTCCATTGAATTAATGTGTGTGATAATTTGTGTAGATTGAGGTGGATGATCCACTTGAATTATGTTGTGATGTTTTGTTTCCCTTTGATTTCTTACTTTATTTGGATTCTAAATTCGAAAAAAAAAAAAAAAA | |||||||||
gi|73887362|gb|DT490100.1|DT490100 WS02544.B21_A15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_A15 3', mRNA sequence GGAGATGGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): GGAGAAAAAAAAGAAAAACCCTACAGCAAAAAAAAACCTAGAAAGCTAAACCCTTTCTCCTCCTGCAAGCCGCCGGCCCCTCCCTTTGAGACCAAAGAACCCCTGACTTTTCTCTTCTTGAGGCCGCCCCTCCCATCTCCGGGGGGGGGGGGGGGGGGGGGGGCTCTCCATCTTCCCGGAAAAAGGGGAGAACCCCACACAAATACACAGCTGCTGGCCGCCCTTCCTCTCTCTTGGGACCAAAACCAGAGAAACCCCTGGCTGAAGGGGGCTTTTGAACAGCAGCCGCGCACTCTCCAGCCTTCTCCCCTCAGCCACGGTCTCCCTCTTCTGGCCAACCACAACCATTTCCCTCTCCATCACCAGCAGGCCTCTGCTTGCCTCACCGCCGGTCAAAGAAGAAAGAGGGGCTCACTCTCTCATCTCCATCGCCAGGTCTCCTCCATTCGCCCCCCCAGCGGCGGTCAAGACAGCAGCCACCGCCCTCCTCTTCCTCTGCTTTTCTTCCCCAAAACCGTTCCCCTGCTTTGTGATTTTCGCCCCCAAAGCCAGCCGGCCGCGCCCCTCCTCTGGCCGTCGCTCTCCCTCGCGGCCAAGAAAATCGCAAGAGCCCCCACGGACGACAGCAGCAAGGCCAACCACCGCTGCCACCAACAGAAGCGAAGACCATCAACGCAGCGACCACCGCCTACAGCCCACTCCACAACCACCAGATCTGCCGTTTAAAGCAGGAAAGAACAGCCAAACCAGAATAGAAAAACAGATCTGTAAGGGGGGAGAAGCAGGTCCAAAAAAGAAAAAAACAGAGCGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52496397|gb|CV243422.1|CV243422 WS02518.B21_N09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_N09 3', mRNA sequence GGAGATGGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): AAGAAAGGATAATTGAAGTTAGACAGAAGGCTGCTGCTAACAGGGACAAGTTTCGCACATCTCCTGGTGGAATGTATAGACCTGGCTCTTATTCAAGTACAGGGGGGTATGATGACGATGGTCGCTATAAGGATGAGGATCGAAATGGATATGGTTATGGCAAAGAAAGAGAATACAATTATAGGGATGATGACCGGTATGGTAAATACGGGGATTCGTATGGTCGTGATGCTGATCGTTACGGTGAAGAACGGTATGGCAGAGATGGATATAGGGATGATGACTATCAGGGAAGAAGTCGAAGCATTGATGGTTATGGGTCAAGAAGCAGGAGCTCCGACAGAGATAGAGATCGGGCTTTTGATGACGATTGTCAATCCTCATCTCGCGGCAGTGGTGCTAGAGCTGATGATCGGGCTCAGGATGGAAGGCGGCTTGAGCGAAAACCTTCCGAGCAAAATATTGGTGGTCCTCCCAGCTATGAAGAAACTATAAGTGAATCCCGAAGCCCTGCTCACAGTGAAAGGAATGGGGAAACTTTAGCAGCACCTGCTCCTGGAGCTTCTCCACCTCCAAGCAATCCTGGACAAGCAAACACTTTTGATGTGAGGTCTCCATCTCCTGCAGACCGGGAAATTGAGGTGGCTGATGAATTTGATCCACGTGGTCCTGTTTCAGCTTCCCCCACAGCAACATCTGTTCCAACTGCCTCTGCTTTCCCTACCACCTCAAACAATGCTGAAATGGATTTACTCGGCTCTTTATCAGATGTTTTTGCTCCAAATCCATTGGCCATTGTGCCAGTCACTTCTGCAACATCATCCTCTGAAGCTGATGCCCAGGCAAACTTTTCTGGATCCACTTTTGCTTCAACACAAAAAAAAAAAAAAAAAACTCGA | |||||||||
gi|52497884|gb|CV244909.1|CV244909 WS0255.B21_P08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_P08 3', mRNA sequence GGAGATGGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): GGAACAAGGATGAGTTGCAACGGGTGCAGAGTGCTTCGAAAGGGATGCAGTGAGAACTGTATTTTACGGCCGTGTTTACAGTGGATTGAAAGCCCTGAAGCTCAAGGCCATGCTACTGTTTTCGTTGCCAAGTTTTTTGGCCGTGCTGGTCTTATGTCCTTCATTTCTGCTGTCCCTGAAAACCAACGTCCTTCTTTGTTTCAATCTTTGTTATTCGAGGCTTGTGGTAGAACGGTGAATCCAGTAAACGGTGCTGCGGGCCTTTTATGGACTGGAAATTGGCACGTCTGCCAAGCTGCAGTGGAAACAGTCCTGCGAGGAGGAACTTTACAGCCGATGCCTGAGTTACTTACTGGCGGCGGAGGATCTCCATCTCCTTCATCAGACGAAGCATCGGAGGTTGAAGTAGCCTGTACGGACATATGGAAGCTACAGGATCCGAATCCAAATCACCATCCTAGATTCTCGATTTCGAGATCTAGAGTCTCCCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|60701039|gb|DN490941.1|DN490941 UM40TE08.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM40TE08 3', GGAGATGGAGAGCTTACTCC EST sequence (targeted fragment marked with yellow): AGAGAGAGAGAGAGAGAAGAGAAATAAATATTTCTCTCTCCCTTCCCAAATAAATAGTAAAAAGAAAAACCCGCCCTGTGGGGGAGGGTACTCTCCGACAGAATATTGGAAAATTATGTGGCACGCGGAAAAAGGTGTGTCTCTCCGTGTGTTTTCCAAAGAGGGAAATACAATCTCCACAAGATATGTTTTTTGTTATGTGTCCAAAGGGAGAGGGGAGTAATTTCCCCATCTCAGGGCAGGGTGTGATTGAATACTTTGGGTGTGGAAAACGCGTGTGGGGACTTATTTTCTTACAATGCAGTCGAGAAATAAGGATGCTCCGAATCAGGGACACAGTCAGTTCACATGTTCTGTGGTTGAAGTTGAAGTCTTCTGATCATCGAAAGTCTGCAAAAAGCACATCAATGTCAATAGTGCGGCACGTGCATCTCTGAGATTTTCCCCGATTAAAGAAGGGGTTATAGTACATAGCAGGTATGATAACTTTGCTGTCATATTCTTTCAAGGGTGGGAGTTCCCCCCTAAATTTAACAAGAGGTCAGCCCATAAATAAACTTCGATGTCATTGGAACGCCAACAATGATGAGCGTATATTATACATGCAAGAGACACAAAAGCTTTTTTGAATTTTTTGAAGATGATAGCAGGAACAGAAGTGGTTGTCTGGGTTTTGCTTGTTAGGAATGGAACATGGAGAGCTGAAATGATGGGGGTTTTCCCCCCCCTTTTTCTAGAGAACCTCCAAAGTATATCCTCTTAGTTTGGTTCGTTGGTAATGTACATTAAACTGTAAAAATTAGGTGTTCTGTATTTTGCAATGAAATTTGGAGTCGGTCAGCATAATACAGACAAAACTTAC | |||||||||