| mature miRNA: GGAGCTAGAGCTGTGCCAAACCGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218488289|gb|FG944792.1|FG944792 MA_93-11_01687 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s GGAGCTAGAGCTGTGCCAAACCGG EST sequence (targeted fragment marked with yellow): CGAATTGGTATACCAGGACCATGCTAGAACAGGCTTATACATGCGATTATTTGTGTATTTTTGTCCGGTTGTTTTCATTGTTAAATTGCCATTCTGCCAATATCACAGATTTTTGTAAGCTAAAGTTTAAAATAGCACTGGAGAGTATCACATCTGAATTACATCCCTGCAACTGCCATACAAGCACTACGTAAGCTCTGCATCTAAGGGCCTGTTTGGCACAGCTCCAGCTCCAGCTCCACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCAAAACTGGGAGTGGAGTTGGGTGGAGCTCTCTCACAAAATGTACTAGAGTTGTGGAGCTGGGTTTAGGCAGCTCCACAACTCCACTCCAGACTCAACTCCTGGAGTTATATTTAGGAGTTGGAGCTGTACCAAACAGGCCCTAAATTTCTACATGTAGTAAATAGGGTGAGTTTGGGTCACTGAAATCTAAGCATATGCCTTTAAAGGCAGGTGA | |||||||||
gi|88964231|gb|CI045424.1|CI045424 CI045424 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GGAGCTAGAGCTGTGCCAAACCGG EST sequence (targeted fragment marked with yellow): CTTAGATATGGTACGCGTGAGATGCGTGAAAAATAAACTTATTTTGGGACGGACAGGATATAATGAGTTTTAGAGTTGGTCACGGTTATTAAGAAAATAAGTAGAATTAAATGGTGGAAGATTGTGATTGGTTGAGAAATGAATGTAGGTGGAGAAATTGAATGGTGGAGGGTTGTGATTGGTTGAGAAGAGAATGTTGGTGGAGAAGTTGTAATATTTTGGAACAAATTCTAAAGGCTAAAAGTCGTTATATTTTGGGACATATGGAGTATTAAAGATAGGAAATGCCCTATTTAAGAAAGCTACAGATCCTAAAAAGCAATTGGTGAGTATCTAGCTGAAGCTTACGTTATCCAACTTCTGGCTTCCAGTTCATTGATTATTGATTATGCACCTTCTGACTCGTAGAATCTGAAATAAGAATCTAGACCATTTGGACAAGCTAAGGGCCTGTTTGGCACAGCTCCAGCTCTAGCTCCACTTCTCTTGGAGCTGGAGCTCAGCCAAACAATTACAGCTCCATTAAAATTGGGAGTGAAGCTGGGTGAAGCTCGCACAAAATAA | |||||||||
gi|89188418|gb|CI115667.1|CI115667 CI115667 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo GGAGCTAGAGCTGTGCCAAACCGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTGAACAAGTTGAAATATTTATTCAAGAAAAACTTAGTTGATGTTAAGGGAAGCTTGAACAGAAATGCTACTACCAAGAAGTAGCACAAAACTATGGTGATATAATAACAGGAGTTACAGATAGTTACAGAAACTGGAGTTGCAGCATCTTTGCTGGGAATTCACCAGGCCCTCAGTATCAGCCACCACAGTTAGGTAGGATGAACCTTTTGGGTTGCAGATCATTGCCATCAATCTATGGGCCTGTTTGGCACAGCTCCAGCTCCAGCTCTACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCAAAACTGGGAGTGGAGCTGGGTGGAGCTCTCTCACAAAATGAACTAGAGTTGTGGAGCTGGGTTTAGGCAGCTCCACAACTCCACTCCAGACCCAACTCTTGGAGCTAAATTTAGGAGTTAGAGCT | |||||||||
gi|58689886|gb|CK078573.1|CK078573 81000rsicen_7111.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indic GGAGCTAGAGCTGTGCCAAACCGG EST sequence (targeted fragment marked with yellow): CCGGGCTGCAGGTTTTTTATCTACTAACAAACGATTTAAGCATAGAATCAAACCCAAAATAACATTTCAATTGTAGCACGCCTAGTACAGTACTGACTTCTACTGATTCTGGCTAGAGGTTTCATACATGCATCTAATAAGCTTTCATTCTGAAGTTTTCTATGACTATATGAATAAACGCAACTTCAGGCCTGTTTGGCATAGCTCCAGCTCCAGCTCCACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCGGCTCAACTAAAATTAGGAGTGGAGCTGGGTGGAGCTCTCTCACAAAATAAACTAGAGTTGTGGAGCTGGGTTTAGGCAGCTCCACAACTCCACTCCAGCCCCAACTCCTGGAGCTAAATTTAAGAGTTGGAGCTGTACCAAACAAGCCATTCACAAGTAATACCTTTTTTAAGCCTATACCAAAGGAACACCAGTATGCATGAAGCCTCTATTGACCAGAGTGGCTAACGAAACCCAACCTGCTCAAAGTTGCATGCAAATGGAGACTAGAGCTCCTATGCAAAGTGATCCCCATCACCTCACTCATGTCGAGTGACTCGGGGCTCACCCCATCAGGAAGTGCCCAGTCAAAGTGGTAAAGGAGGTTCGCTAATATGAGCTCAAGTGTGGTGGTAGCGAACAACGCTCCAGGGCATTGCCTGCATCCA | |||||||||
gi|38477656|gb|CF961789.1|CF961789 7266rsiced_10336.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic GGAGCTAGAGCTGTGCCAAACCGG EST sequence (targeted fragment marked with yellow): GGATCCCCGGGCTGCAGGCTCGAGTTTTTTTTTTTGGTCGTGGACTCGTGGTTGCAGCTTGCGGAGCTGCGGCGAGGAGCATACGGGTGCGGCGGCGGGTGGGAGTGGGCGCGGATCATCAGCACGCCGGCCAGCGCCTGCATGACCAGCTACTGGACGGCCGTCGCCACGTAGTCCGCCGCCCGGCGGCGCCGCCGCCGCCGCCGTCGAAGCGGGGTCGCTGAAATTTTTGGTGTGCCGCGTCATAGCGGGAAACGGGGAACTGTAAAGGTATACTACACACGTGTCATAGATCTGGTACTTGTACCGTTGTACTGTACCAGTACACTAGTACTAAGGCCCCGTTTGGCACAGCTCCAGCTCCTAACTCCAACTTACCTTGAGCAGGAGCTATTCCAAATAGTCCAGATTCTCCATTTTTGGGAGCGGAGTTGGCAGAGCTACTCCACAAATTTGTACTACGGGGGTTGAGCTGGGTTTTTGCTGCTCCACAAC | |||||||||
gi|88265169|gb|CI368943.1|CI368943 CI368943 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GGAGCTAGAGCTGTGCCAAACCGG EST sequence (targeted fragment marked with yellow): GAACAGAAATGCTACTACCAAGAAGTAGCACAAAACTATGGTGATATAATAACAGGAGTTACAGATTGTTACAGAAACTGGAGTTGCAGCATCTTTGCTGGGAATTCACCAGGCCCTCAGTATCAGCCACCACAGTTAGGTAGGATGAACCTTTTGGGTTGCAGATCATTGCCATCAATCTATGGGCCTGTTTTGGCACAGCTCCAGCTCCAGCTCTACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCAAAACTGGGAGTGGAGCTGGGTGGAGCTCTCTCACAAAATGAACTAGAGTTGTGGAGCTGGGTTTAGGCAGCTCCACAACTCCACTCCAGACCCAACTCTTGGAGCTAAATTTAGGAGTTAGAGCTGTACCAAACAGGCCCTATATGTCTCAGCTCCGAAAACGGAGATGAAGAAAGATCCAAGATACAGTACCGGAAATTCTACAGCA | |||||||||