| mature miRNA: GGAGCTTTCTTCGGTCCACTT species: Poncirus trifoliata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188272063|gb|EY819463.1|EY819463 PT11-C1-901-008-E05-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTGCACTGTTATCAGGACAATGCTGAAAACAGGATTCTTTAGCGGTTTCAAGCAGCTATAAATTGTAAGGGGGAGTTCTATTAAATCTGCTGTCTTCCCTCTCTGTTTTTTCTACAGGGTCTTTACTTTCAGAGGCATAATATTGCACTGTTATCAGGACAATGCTGAAAACAGGATTCTTTAGCGGTTTCAAGCAGCTATGAATTGTAAGGGGGAGTTCTATTAAATCTGTCCATATAATTGTCAGATCAAGTGATGTATTTGTACTTTTTATAGGCTATTGATGTTTGATACTTGGCTGGAATTGCAATTTTGAGAAGAAAAAAAAAGAAATGGATCTTTAGTTGGATCCAAGAAAGCTCTAGGCTGCTGCTGGCTATAATGTTTGATCAGGCAGCTCCCTGTAATGGATAAATTGGATTTACCCTTTTTCCATGATTGATTTGATTATTCTATAAATTTGCCGCCAGTCCCTTTCCATTAAAAAAAAAAGAAAAGAGGAAGAGGGGAGGGCGGCCGGCCCGACGAGGAGGAAAAGGAAGAGGAAGGGGGGGCGCTCCTA | |||||||||
gi|188289050|gb|EY815124.1|EY815124 PT11-C1-900-059-C12-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): GAGTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGCACAAACGCCGCCACAGGGATGTCATTGACCCCATTTTCAGCCAAATCAAAAGCGCTTAAAATTGACAAGCTCGCACCCAAACTATGCCCCGTGAAAATTATACTCGGCTCCTCGCCTTGATAACGTTCCCTCAACTCTTGAATCTTAGACACTAACTGAGCCCTGGCACTCAGCTTCGTGAATGACGACTTGGGATCTTCGGAAGTGTAAATTGTAAGCCATCCTTGCATAACTTTCGGCACCGTCTCGTCATCGTCGCTGTCGCTGCTGCTGTCGGTGTCGTTCTTTTCTTCGACTCTGAACTTACTTTTATTCAAAATCGATCCAACGGAAGCCTGCTGGGCGCCTAAAACGTTAACCCACTCGTAGTTCCTGGTGGTCCCACGCCATGCAACGTAGATTTCACGGCGGCCGATGGCTTTCGAGCGTTCGTCGGAGGTGACGGCGATGTAGCCGATCCAGTTCGACTCGCGGTCCCAGGACTCACGCGAGAGGGAGTGGACCAAGAAGGCTTCGGGGACGCTGACGCGGGCGGTGCCGTAAAGGAAAGAGAAGACTTGGTAATCCGGTGCGTTTTGGAGCATGACTTTGTCAAAGAAGCCGCGCTTGCCGAAACGGCTGGTGCCGCAGTACTTGGAGTTCTGGTCGTTTGTTGAAGGCGTCTAAGGTTGCCTGGATGAGTCCCCCCCACGGAAGATGAACTTTCCGAAGGAAAAAATTAACGGGGCCAACAGCCCCATACAGCTGTTACTCCCCATAGGTCCCGCAAACGGATTGCCCTTCGCGAAGCTCTGGCCATTTAATTAGAAGGAAGCCAAGACAAAAAACGGAAGGGTGCTGTCACTAG | |||||||||
gi|57879381|gb|CX644552.1|CX644552 UCRPT02_74G04_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): TTTCATTCCTTTAATAGAGTATTTGTAATGGGTGGACCTAAGAAAGCACCTCCGATTGAGAATAGGCTGCCTTGTACCCTTGAGGAACTCTACAAGGGGACTACTAAGAAGATAAAGATCTATAGGAAAATTGTTGACATCAATGGTAATACAATCAAGGTGGAAGAAATTCTAACTATTAATGTGAAGCCTGGATGGAAGAAGGGTACGAGGATCACCTTTGAAGAGAAGGGAAATGTGCAGCAAAATGTTAAACCTGCAGACGTCGTCTTCATCGTGGATGAGAAGCCTCACAGTGTGTTTACTCGAGATGGGAATGATTTGATCGTCACACGGACGATAACTCTCGGTGAGGCCTTGAAAGGTTATACGGTTCGTCTCACCACCCTGGATGGAAGGATTTTGAACATCCCGATCGACAATGTGATTCATCCCAACTATGAGATGACTGTCCCAAGAGAGGGGATGCCAATTCAGAACGAGCCATCAAAGAGAGGCAACTTGACAATCAAGTTCAACATCAAGTTCCCAACAAGTTTGACCGCAGAGCAGAAGGCCGGGATCAAGTTTTAACAGCTTTTAAATCGATGGTTACCTTGTTTTGGGTTGTGTCGGAGTTGCGGTGTCCTAATTAATGTTGTCATCTTTTTTTTTGGAGCTGGCTAAGTTACATAAGTTACAGCATCTGTAGGTACTTCAGCCAGGCAACCGACCTTGCTTTGCGTTGCTTTTTCTCTGTAAGTCAGGACACGTGTGCTATTTGCTTTGGGCCTTTTTTTTTTTTCCCCAAAATGTGTGTCAGTTGTGTATAAATAAAGATTTTGACTTTGTTTTTTTTCCTTTTAAG | |||||||||
gi|188381553|gb|EY822549.1|EY822549 PT11-C1-901-043-H10-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTTTGCTGAAGTTTGGAAGAAGCTAACACGACCAGTAGCCTGACGCCAGATTGATGATCAGATGTAGCGAAAAAGATAGCTATCAGAAAAAGTGTTTGCTTAGTTCCGAGGTCTCTTATCAAAAGAATTACAGGTTTCCATATCCTTTTTTACTGAGGACTAAGCAGACCAGCAGGAGACTAGTTTGTTCAGTTGCCACAGAAAGTGTACCAAAGGAAGCTCAGGAATCCAAAATGGATACACCCAAAGAGATATTTTTGAAGGACTACAAGATGCCAAATTACTATTTTGACACGGTGGATTTGAAATTTTCCTTGGGCGAGGAGAAAACAATTGTTAGTTCAAAAATAACAGTGTTTCCTAGGGTTGAAGGTTCTTCTTCTCCACTGGTTTTGGATGGACAAGATCTCGAGCTTGTTTCAATCAGGGTTAACGGTATAGAACTGAAGGAAGGAGATTATCACTTGGACTCACGTCATTTGACACTCCAATCACCACCAAATGGTACATTTACCTTGGAAATTGTCACTGAGATATATCCTCCAAAGAACACCTCATTAGAAGGGCTTTACAAGTCATCTGGGAATTTCTGGACTCAATGTGAAGCAGAGGGTTTTAGAAGATTACCTTTTATCAGGACCGTCCTGATATAATGGCAAAATACAGGTGCTATATTGAAGCTGATAGGCATTGTACGCAACATTGCTGTCTAGTGGAATCTCATACAAAAAGGAACCTTTGAGGGGGGGAAACTTATGCCCCTTGGGAGGATCCATTCAAAAGCCTTGCTAATGGTTTG | |||||||||
gi|188466354|gb|EY820715.1|EY820715 PT11-C1-901-024-C01-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): CTGGTACGCTGCGGTCCCGGTCGGATTCCNGGGTCGACCACGCGTCCGAGAGGATGGTAGTGTCTGATGACTGTCTTGAGTTGCTGTCGAGGTCGTTTGTGAATTTTAAGTCGTTGGTTCTTGTTAGCTGTGAGGGGTTTACCACTGATGGATTGGCTGCTATTGCTGCCAATTGTAGGTATCTTAGGGAGCTTGACTTGCAAGAAATTGAAGTAGATGATAATAGAGGACAGTGGATTAGCTGCTTTCCTGATAGCTGCACCTCTCTTGTCTCCCTGAATTTCTCATGCCTCGAAGGAGAAATTAATTTGACAGCCCTTGAGAGACTTGTAGCAAGGTCTCCTAATCTCAAAAATTTGAGGTTAAATCGGGCAGTGCCTCTTGACACCCTCCAAGAATTGTTGATGCGAGCTCCTCACCTAGTAGACTTAGGCCTTGGCTCGTGTGTATATGATCCATCTGTCTGAGGGCTACATCAAATTGAAAGCTAACCAATGGCAAGTGGAAGTGGATGAAGAAGGTTCCTCACGAGTATGGGAGGGCGGGCGGCCCGGGAGCGCGGGGGGCGAGGGAGGGGGGGTGGGAACAAACAGAAACCACCGAGAGGTGTTAAATGGAGAAAACGGGATCACGGCAGGAGAGGCGGAGACGCGGCGCCCCGACAAGAGACACTGGCCAGAAACCACAATAAAACAGGGAGGGAGGAGAGAAGAAGAATGAAGAACGAGAAAAAGAGGTGAGAGGGGCAGGGAGGCGGCGAAGATGAAGAAGAATAAGTCGGGGCACACGCGCCCCGCCAAGTAGAAGAGGTCGATGAGAGGTAACACAAGACGGAAGGCCTCCGTCGTCGTAGGGAGTGGCACACCGCGAGACGGGCGCCACCCGCGGAGGCCGAGCGAGAGACACGAGCGGCTATAAGACCGAAAGGTGCGCGCGCGCGCGGAGCGCAGGGTGGGGNGAGGGGCGGCGCCGGCAGCGCGACATCACATGTCTGCTTCTGGTCGTACGCCGGACTTGAATAGTGCNCCATGCGCCGGGCAGGATATACAGAACGATGTAAGTAAACGCCGAACACGTAA | |||||||||
gi|57876793|gb|CX641964.1|CX641964 UCRPT02_57A03_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): CTGTATACTTCAGTTTCTTCATGTCTTCAATGGTTGGAAATCGATCTCCTAAAATAGAATCAACCTCATCCTGGAGCTTGGATAAGACAGCTGGTTCCTTGGATAGGAGATAAAAGGTCCATGTTAAAACTGCAGCTGATGTTTCATGCCCAGCTATAAGCATTGTCATCAAGTCATCACGGAGCTGTTTACTAGAAACATCATCTCCTGATGCCAACAGAAAGTGGAGAATACTAGGATCTTGTTCATTCATGTAATCCTCATGAAACTGCAGCTCCTCTTCATCTACCATCCTCTTTGGTTTTTCTGTTATCTTTTCCTTGCCCTCATTTCTCATAATAAAGCAGATGTGCAAGTGGAATTAAAAAAGCTCCAAATCATCAAACTTGTATCAGTACTTAATTGGAAATTTGCAAAATAAAATAAAATAATATTTCCAAAAACAACTGTAAACAATCTCTTGGTGTAATTTAGAATAAACCTGATATTAGTTACTGCATCTGGGGGAAGGGAGTTGCAATATGAATTATACCCACCCAAGACATAGTTGCTGTTGACAATTTGAAAGTTTTTTGAATTATTATTTTTCTTTATCTTCTAGTTTTTCACATTTTTGAGAGTTCCAATCCATGGGCAGCTTGTGAGAGTTCCACCCATACAGGTACTGTAGGAGATGGGCATTCAGAAGTGTCCAGTGAATCCTCTCCACAGAGTGCAACTTTGCAAACATCAATTCAAGTGTCAATGACAGTCATACTCTTTAAATAACCCCTC | |||||||||
gi|188287833|gb|EY814203.1|EY814203 PT11-C1-900-045-H09-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCACAAACGCCGCCACAGGGATGTCAGTGACCCCATTTTCAGCCAAATCAAAAGCGCTTAAAATTGACAAGCTCGCACCCAAACTATGCCCCGTGAAAATTATACTCAGCTCCTCGCCTTGATAACGTTCCCTCAACTCTTGAATCTTAGACACTAACTGAGCCCTGGCACTCAGCTTCGTGAATGACGACTTGGGATCTTCGGAAGTGTAAATTGTAAGCCATCCTTGCATAACTTTCGGCACCGTCTCGTCATCGTCGCTGTCGCTGCTGCTGTCGGTGTCGTTCTTTTCTTCGACTCTGAACTTACTTTTATTCAAAATCGATCCAACGGAAGCCTGCTGGGCGCCTAAAACGTTAACCCACTCGTAGTTCCTGGTGGTCCCACGCCATGCAACGTAGATTTCACGGCGGCCGATGGCTTTCGAGCGTTCGTCGGAGGTGACGGCGATGTANCCGATCCAGTTCGACTCGCGGTCCCAGGACTCACGCGAGAGGGAGTGGACCAAGAAGGCTTCGGGGACGCTGACGCGGGCGGTGCCNTAAAGGAAAGAGAGACTTGGTAATCCGGGGCGTTTTGGAGCATGACTTTGTCAAAAAACCGCCCTTGCCGTAACGGCTGGTGCCCCCATACTGGAAATTTTGGGCGTTGTTGAAGGGGCTCAAAGGTTGCTGATGAAGTCCCGCAGGGGGGGAAGAACTTCCGGAGAAAAAATCTACGGGACCAAACCCCACTCCCAATGTTCTTCCCACAATCTCCGACACAGGCGTGTCGCTTCCGGCGCGGGGAGGAGTGAGAGGGAGCGCGTAGGAAACAAGAGCGGGGGTATTGTTTTGTTAGNGGGGCGTGGAAGGGAAGGGCATAAGGATTGACAATATGGTAAAGAGGCAAACACAGCGGCGGAGGGA | |||||||||
gi|188304233|gb|EY814951.1|EY814951 PT11-C1-900-057-D07-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): CACAAACGCCGCCACAGGGATGTCCTTGACCCCATTTTCAGCCAAATCAAAAGCGCTTAAAATTGACTAGCTCGCACCCAAACTATGCCCCGTGAAAATTATACTCAGCTCCTCGCCTTGATAACGTTCCCTCAACTCTTGAATCTTAGACACTAACTGAGCCCTGGCACTCAGCTTCGTGAATGACGACTTGGGATCTTCGGAAGTGTAAATTGTAAGCCATCCTTGCATAACTTTCGGCACCGTCTCGTCATCGTCGCTGTCGCTGCTGCTGTCGGTGTCGTTCTTTTCTTCGACTCTGAACTTACTTTTATTCAAAATCGATCCAACGGAAGCCTGCTGGGCGCCTAAAACGTTAACCCACTCGTAGTTCCTGGTGGTCCCACGCCATGCAACGTAGATTTCACGGCGGCCGATGGCTTTCGAGCGTTCGTCGGAGGTGACGGCGATGTAGCCGATCCAGTTCGACTCGCGGTCCCAGGACTCACGCGAGAGGGAGTGGACCAAGAAGGCTTCGGGGACGCTGACGCGGGCGGTGCCGTAGAGGAAAGAGAAGACTTGGTAATCCGGTGCGTTTTGGAGCATGACTTTGTCAAAGAAGCCGCGCTTGCCGTAACGGCTGGTGCCGCAGTACTTGGAGTTCTGGTCGTTGTTGAAGGCGTCGTAGGTTGCCTGAATGAAGTCGCCGCAGCGGAGGATGAGCTTCCGGAGGGAAAGATCTAGCGGGTCCAGCAGCCCCGTTCCATTTGTTGCTCCCCAATAACTTCCGGCCACGGGGGCTTGTTCTTCTTGCGTCGTCTTGTCGCCTTGGAATATTGTAATCATGGGGAGGAAAATAAAAAAGTGGATTTTTTTTTTTTGGTTGTTTTTATTTTTTTTNAGGGGAAAGGGGAAAATATAAATTTTAAAAAAATTTGAACAATACAAAAAAAAAAAAAAAAAAGGGGGGCCCCCTCCTAAAAAGATCCCAA | |||||||||
gi|57870363|gb|CX635611.1|CX635611 UCRPT02_12H01_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia GGAGCTTTCTTCGGTCCACTT EST sequence (targeted fragment marked with yellow): CGAGAGAGCCGAAGAACTCCACTGGGTTAGTCTGATAGCCGCAGAACAAAATGAAGTTCAATATTGCAAATCCCACCACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCCGAGCATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTTGGGGAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGTGACAAGCAAGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTCTTCTGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGATGGAGAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCTCTCAGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCTTCAAAGATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTATGTCAACACATATCGTCGGACCTTTACAACCAAAACTGGTAAGAAGGTTAGCAAGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTGCAGAGGAAGCGTGCCAGAATTGCTGAGAAGAAGCAGAGAATTGCCAAGGCCAAAGCAGAGGCTGCCGAGTACCAGAAGCTCCTTGCTACCCGGTTGAAGGAACAGCGTGAACGTCGCAGTGAGAGTTTGGCAAAGAAGAGATCCAGGCTCTCTGCTGCTTCTAAG | |||||||||