| mature miRNA: GGAGTTGATGTTGATGACGGC species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211647837|gb|GE514661.1|GE514661 CCFT954.b1_D23.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT954, mRNA sequence GGAGTTGATGTTGATGACGGC EST sequence (targeted fragment marked with yellow): AATTCCGATGCTCCTCCTCCGTTCACAAAACCAAAAACCCCTTTTCCCCCCCATCAAACCCTAACCCTAACTTTCTCAATTCTCCGATCAATTCACACACAATTAGCCTTTCAATCCGATCCATGCCTCCGATCAGCACCTCCTCCATCTTCTAACAAACAATATGGATCACAAACATGATCAAATTTCTCCGATTTCAACCCTTCTTCCCGCCATAACCGACATCAACTCCGTTGTTGATTCATCATCGTCATCACCGCCGTTGAATTCGGATCCCAATCAGAGCAACTGTCATGGAGTATTGTATACGGCTGCTTTGTCGATTCCGGCTGCGTTGTTTATAGTGTACCTAGGGTTTTATTTGAAGAAGAATGTTAAGAAGCTTAGTCACCGTCGTTCGCATGTTATGATCGCTTATTATGTGCTTCTTTGGTTGTCTGCTGTTCTTAATCTCGTTTGGTGCTCTCTTCAGGCATGGCAATGCACTTCTGGGAAGGAGGTTTCGTGGAATTTATTGTCATTGCTGACAGAATCTGGATCCTTATGTCTAGAAATCAGTTTGATCGCCTTCTTACTTCAGGAAAACTATGCAACTGGGTTGGAGACATTAGCTCATACTTTCATGGTTTCAGGGCTGATTGTTGGAGCAGATATGCTTCTCAAGGCAATATTTGTGTTTGGATTTGGCGTGCCGCTNTTTATGGATGGTGCAACTACTCATAGCGTAAAATGGGGCATGTGGACATTCGATGAAAT | |||||||||
gi|211607166|gb|GE485027.1|GE485027 CCFS1844.g1_H06.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS1844, mRNA sequence GGAGTTGATGTTGATGACGGC EST sequence (targeted fragment marked with yellow): GACGTAACAAGGACTTGCAATAAAGTAGAAGAAACAACATTGGCAACATACTTAACATTAAGACAAGTGGATCACACCAGCCCATAGCTTTCATATAAAAAGATCAAAATGCGAATTAAGTTTACATGTAGAGCCACAAGAGAGGTTCCGAACTGAATCCCAAGTTCCGACTGGAAGGAGCTCATCGGTGAGAGAGTCCCGGATGTTAAAATTACTGAAAGAACACCATCGGACATGTTCTTGAACACGAGAGCTGGGTTCATGCACCACAAACTGAAAGTACAGGGCCAGTCATCAACATCAAGTCCAGCATCACCGTAGATATTATGACATTGTTATACAAGCTGACAGTCGCATATGTGTTTCCCGTCTTTAGAGAAAAAGCAGGTAAGCGAAGAGAACAGGTCTTCTAATACCTTGCAGGGATGCCACTTGAATGAGGAACTTCTGGGTCTGCATCTGTAGCTATTTTAATTGCCTGAACTTCTGGGTCGAGCATCACCCCAGAAGCAGGCCCATGGCGGCTTCCGCCGCCATCCCACCACTTGATGTGACTCATAGCTGCTCAAAAAAGAGGACTTGCACCACCACCCGTAAAGGGAGCCGCTCGTTTTGAACCGTGTGCTTGCAAGCATCCGGTGACAATTTTCTGCAATCCA | |||||||||
gi|211623366|gb|GE500898.1|GE500898 CCFT2504.g1_O02.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT2504, mRNA sequence GGAGTTGATGTTGATGACGGC EST sequence (targeted fragment marked with yellow): AATTAAAACACATTTTTTCTCAACATGGGCCACCTACTTAACATTGGGCTCACAACACTTGTCAGGGGGGCTCACAACACTACCTTCACGTAACGTAACAAGGACTTGCAATAAAGTAGAAGAAACAACATTGGCAACATACTTAACATTAAGACAAGTGGATCACACCAGCCCATAGCTTTCATATAAAAAGATCGAAATGCGAATTAAGTTTACATGTGGAGCCACAAGAGAGGTTCCGAACTGAATCCCAAGTTCCGACTGGAAGGAGCTCATCGGTGAGAGAGTCCCGGATGTTAAAATTACTGAAAGAACACCATCGGACATGTTCTTGAACACGAGAGCTGGGTTCATGCACCACAAACTGAAAGTACAGGGCCAGTCATCAACATCAAGTCCAGCATCACCGTAAATATTATGACATTGTTATACAAGCTGACAGCCGCATATGGGTTTCCCGTCTTTAGAGAAAAAAGCAGGTAATCGAAAAGAACAAGTCTTCTAATACCTTGCAGGGGATGCCACTTGAAAGAGAACTTCTGGGGCTGCATCTGTAGCTTATTTTATTGCCTGAACTTCTGGGGC | |||||||||
gi|211654020|gb|GE522424.1|GE522424 CCFU811.g1_E11.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU811, mRNA sequence GGAGTTGATGTTGATGACGGC EST sequence (targeted fragment marked with yellow): AGGCTCCACAAAACAACTTCAAACCAAATTTACAATTCAACCATCCATGCAAATAAAGTCATGAAAATGCAGCAAATGTGTTTGTAGTAATGCGGATACAAAGTTTATAAAGAATGGAAATTGATCTCTAGCAGTCGCATCCAGAGGCCCTCTGTTGACTGGGGCTGCCTACATCAATGGTATCCGGCAGGTATATTTCTTCCTCTTCCCCACTCTTCAAGGGATTCTTAGCTATGACTTGAAAAGCTTCTTCAACGTTGATCCCCTCCTTTGCAGAAGTTTCGAAATACGGAATGTTCCCTTTCGAGGCACACCAAGCCCTAGCCTTTTTCTCAGAAACCACCCTGCTGTTGCCACCATCAACGTCAACTTTGTTACCCAGAACAACAAACGGGAAATTTTCCGGATCCGAAGGGCTAGCCTGAATAAGGAATTCTTCCCTCCCGTTGTTGAGATTATCGAATGACTTTTGCACATTCACATCATACACAAGAACACAGCAATCTGCACCTCGGGAGAAAGCAACTCCCAGGCTCTGAAATCTTTCTTGGCCAGCTGTATCCCATATCTGTAGAGGAAGAGCCTATCCTCAATTCCACTTCTTT | |||||||||
gi|90450790|gb|DY912673.1|DY912673 CHAX7983.b1_N04.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX7983, mRN GGAGTTGATGTTGATGACGGC EST sequence (targeted fragment marked with yellow): ACACACACGCCCATAACCATCGGAATACAATACCTAACGCCACCTTCACTCTCACCGTCACCCTAACCGTCTCCGTTATCTTCTTTTCATCATCCTCTTGCTTTTGAAGATCGCAGATCAAACTCATACTTGTAGATCCGAATTATCTATCTCAACTTACCACTTTCTATCCCTACGTTTTGTATATAGTTCTTGGATGACCTTGGGACTACATTTGAACAATGACATCGAGTATGTTGGCTGGAGAAAGAAAGTGGGCCTCTTCAAGAAGAGGTGGCATGACTGTTTTGGGCAAAGTTGCTGTTCCTAAACCTATTAATTTACCTAGCCAAAAGTTAGAAAATCATGGTTTGGATCCAAATGTGGAAATTGTTCCCAAGGGTAGCCTTAGCTGGGGAAGCCGGCCATCTTCATCAACATCAAATCCTTGGGGTTCGTCAGCAGTATCTCCAAAGGCTGATGGCACTGCTGTTTCCCCACATCATTCTAGTGGCCGTCCTACATCAGGAGGTGGTCTTAGTCGGCCATCAACAGCTGGCAGTGATAGACATGATCCTTCTACTACTACATGGGGCCCAAATTCTAGGCCATCATCAGCTTCAGGAGTCTTGACTTCAAATCAATCATCGCTAACTTCTTCGCGTCCACTCAGTGCAGAAACAAGACCGGGTAGCTCACATTTATCCCGTTTTGCTGAGCCTGTATATGATAGTTCAGTAGCTTGGGGCCCTAACGGCACTGCAGATAAGCTGTCAATACCTTCCAAAGTCGATGATTTTTCTCTTAGTTCAGGGGACTTTCCAACACTGGGTTCAGAANAAGATAATACGACAAAGAGCGGGGAAACACATGATCATGGTTCTCGTGTTCGTCCCGGATC | |||||||||
gi|211641368|gb|GE509610.1|GE509610 CCFT7130.g1_C08.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT7130, mRNA sequence GGAGTTGATGTTGATGACGGC EST sequence (targeted fragment marked with yellow): GGATTGTAACATTTATTTCTTAATATCAATAAATGTTTGTTATATATTAAGACATGGTATTCAGATGTCTTTGTCTTTGTCTTCAACACCTAAAAAGAAAAAGCTCATTTGATTTTGCATATAAGTAGCAGTACCAACGGCCGATTGTTCATGTAGTTTGACCGCCAAACTCCTTTTGGATGTCCTTGAAAGATACCGTAGCAGATCCCCGCCGCTTTGCTTTCTGTTGAGACTCGTGTTCTCTCCACCCAGTCATATATATCACCTGGAAAGTTGCAGGGATGGAGCCATCTTCTGCTGCAAACATGGACTCATAAACAGCAGCTGTCGCTAGAGCGGTGTCCCTTTTTAAGAATTTGATTCTATTTACAAGCGCATTAGATTCACCCATTGCCCGCAAATGTTCTATTAGCTCCAAAGCTGGTATTCATCAACATCAACACCCGGAAGAGTGAACCCTGCCCTAGTCAACAGATTGCCTGCATCTCGCACTTGTGCTAATGGTGATACTCGTGGACTCACACCACCTTCACGCTCCATATGTGCTATAGTGCACGCGATTCTCAGCTCTTTTAATGTTTCTCCACCAAAAATAGCTGCCCAAAATAAGCCATCAGGTTTTAACGCCAACCTACTTTGTATCATTGCTCCAGGAAGATCATTTGTCCAGTGGAGGCCCCAAGCACTTATTACTAAATCAACAGAACTTCTTTTATAGGTAATATTCTTCATCTGCTACATAAACGAAGTTTCAT | |||||||||
gi|211652109|gb|GE517089.1|GE517089 CCFU2172.g1_G16.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU2172, mRNA sequence GGAGTTGATGTTGATGACGGC EST sequence (targeted fragment marked with yellow): CAGACTCAAAACCAAACACACTACCATAAAGAGACCGAACGTTTACAAAGTTTCACTTTTCATATTTATAACATTAGATCATTAACAAGCTCTCCAATATAAGTTGGGACTTACATAGGTCTCTTAACAAGTTCATGAAATACAAAACCATACATGACACACAGCTAAGTGAAGCAGATTTCTCCAAGCACTCAGAACGGGTTTAGCGCGCTCTGTAATCAACATCAACTTCATCATCTTCAACAGGGACCCCGTCATCATCAACGGTGTTAACACGTTCACATTCATCGATCCATTCACTATATATGTCTATCGGCTCAGTCAAAGCTGTGACAGTAGTACTGAAGTTTTCCTGGCAAATTCGGCAAGATGCCTCACCAATCAAGTTCTTCATATCAATGCGACATTCAACGCTGGTTCCATGGTTGCAAAAGGGGCAACTGAATACAGTGTCGAGTTTGTCCATCCGCTTCCTAGGAGCCGGCTTTGCTCTTGATTTCCTCTTACCCATACTGCAAGTAACTTCCTAACACAGATCAAGGAATCTTCAATCTGATTGAATCAACTAGAGAGCTGCGATTTTGCCCTAGAAACGCGAAATTTGTGAAATCACTGGACGGGGAAATCGTATATATAACTCCCGGGCGT | |||||||||