| mature miRNA: GGATTGTTGTCTGGTTCAAGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87029158|gb|CI276426.1|CI276426 CI276426 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTGAACTAGATGACAATCGATACTCATCTCATCTAGTATAATGTAGTCGTACGTCAATGACATTGACATGTTTTACACATACAAAGATACAAAAAATGTGTCGGACGTAGCCTATGATTGGTACTTTGGTAGGGACCTACAGATCAACTTGTACTCTACAGATGCGAGATAAGGAAGAAAACACTCGGAGCAATCAAGCTGATTAAAAGAATATGGGTGGTTAAAATGGACATATCTGTTGCTCGACGCACTCGTACATACAACAATAGATCAACCAGTAATGATACCTGCCAATACATCACTTTTTCCTCGTGCAAATATGGTGTACACTAAGCGTATAGCATCTAACCAACCATCAAGAGACTCCCAGGTATCAGCAACCAAGAACAAAGGCCCGTGAATTGTTTCTATACAAAGGCCAGCACCAGGTGGCAGTGTTAGATCGGAGCATGCAGACACTGAAACGATATCTTCAACAGCTACTTTAATATATTTTTTGCTTCTCCCCATATGTCCAAGGGGTTTGCTAGAAGGGCTTTCAGAGGCATCGACCTGCTGGAGTCCCTCATGGTTTAAGACAAATTCTGACCTTTCCCAATGTTTATGTGGTGCAATGGTGTTGTCTGCTGGAGGAGCAGTTAGATACCCAGCTTTTAGATATGGTAAAGGTAGCATTGATCGAACCAGACGT | |||||||||
gi|218488167|gb|FG948563.1|FG948563 MA_93-11_05458 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): ATCCTCTTGAATTCTTGCACAAAGTGGTTGACCATACGATTGTCAAAATCTTCACCACCAAGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGGGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTGGTGGCCTTCTTATCAAGACCATAGGCAATAGCTGCAGCAGTCGGCTCGTTGATGATACGCATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACAACGGCATTCTTGATGGTGGTGCCAAGGTAGGCCTCAGCAATCTCACGCATCTTGATGAGGACCATGGAGGAGATCTCTTCTGCAGCAAACTGCTTCTCCTCACCCTTGTACTGGACAACAATCATAGGCTTGTCACCAGGTCCAGCAATCACCTTGAAGGGCCAGAGCTTAATGTCACTCTGAACAGAAGCATCGCTAAACCTCCTGCCAATGAGACGCTTGGCATCAAAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCAGCATCTCCGATGAGCCTCTCGGAGTCGGTGAAACCGACGTAGGAAGGGGTGGTGC | |||||||||
gi|29619279|gb|CB624291.1|CB624291 OSIIEa12M07.r OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa12M07 3', mRNA sequence GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): AGTGTCAGAAAGTGCTAACACATGGAGTACTGTTGGCTATAGGAATTTGTTCCTCAACGGTTGTTGGCCTTCTAATTTTCCTTGGCATAGAATGGATCAAATATAAACGTCGATTGGTTAGACAAGATCTAATGAATAAAAGGGATGCATATTTTCGTCAACATGGAGGCCAATTATTACTTGATATGATGAAATTAGAGAATCAAGTTTCATTTAAGTTGTATGACAGAGAAGAAATTGAGTTAGCAACAAACAACTTCAGGGAGAGCGCAATCCTCGGTCAGGGCGGTCAGGGTACTGTTTACAAAGGTTTTGATCTAGATCCAGAAAACAATCCTGTGGCAATAAAGAGATGCAAGGGAATCGATGCGAATAGGAGGATGGAATTCGGACAAGAGTTGCTCATACTCTCCCGAGTGAGACATGAGTACATTGTCAAACTTCTTGGTTGTTGTCTGCAATTTGAAGTTCCTGTTCTAGTATATGAATTTGTGCCGAATAAGACCCTACACTATTTGATTCATGGCCAAAGCGATGCATCCACTAGAACACTAGATATCCGACTGGAAATCGCTGCCCAGTTTGCTGAAGCACTTGCATACCTACATTCACTTGATCATCCTATTTTTCATGGGGATGTGAAATCTGCCAACATACTTATTGGTGACAAATTTACTGCAAAAGTTTCTGATTTTGGGTGCTCAATATTTAGGGCAGCGGCTGATGAAAATATTAATGTAGGGAAGGGAACAATTGGTTATCTAAAAAAAAAAAAACAAAAAAGGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|88508214|gb|CI435720.1|CI435720 CI435720 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated(45Gy), immi GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): AGCATCTCGTATAGGTTCAATTCTTGTGCTCGCGTGTGCGATAAGCGGCATTGCTATTAATCACATCGGTCATAGTCATCATCATCCTGCCTCAACGCCGAGAATGCCCTGTTTTGTTTGTAAAAATCACTTTTTGATTGGCATCCCGTCCCATTTAGTAGAAGAAGCCAATGATCTTGCCAGAAACGTGCTTGCGTCGGGCCTCCTCGTGGTCCATGATGCCAGCAGAGGTGGTGAGGATGACATAGCCGAACTGACGGGCAGGGAGCAACTTGACAACCCACTTCTCGAGCTCAGAGAGGCGCACGTTGTAGCGGGGAGAGATGACACCAGTCTTGTTGAGGCGGCCGTTGAGCTGGACAACGATCTTGCCCGGATCGGTGGTCGTCGACCTCCTCGAACTCTCCAATGTATCCGTGGCGCTGCATGACCTGGAGGAACTTGATGATGACTTTGGAAGAAGGTCGGATCAGGACCT | |||||||||
gi|29620975|gb|CB625986.1|CB625986 OSIIEa15O04.r OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa15O04 3', mRNA sequence GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): TGTTGTCCCTTCTCCTAGGATTCAGCGTGTGGATTGTCGGAAATCAGCTGTGGAATACATTGATAGTTGGGACACAGCTATAGAATCTGATCATGATTCTCAACATTCCACTGCTCATACATCTACCGCTCATGAATCCTGTCACTCTCCATCATTCATTCCTGAAGAGTCAAAATCAGTTGTTGCTGTTGACTGGCCAGAGCCTCTGGAGCCAATTTCTAATGCTATTGTGGCTGAGGAAAGTACAGTAGAGAGTGTGGACTCCAAGAGCACAGGCGAAAGGGATATTGAAGTAGAACCAGCTCTTTTGATGGACAATGATAAGGAGGCTCCAAAGGGTCTAGAGTCTGACAACAATCCACTTAGAGACAATAATCCTTC | |||||||||
gi|88487715|gb|CI424986.1|CI424986 CI424986 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GGGCATCTCGTATAGGTTCAATTCTTGTGCTCGCGTGTGCGATAAGCGGNATTGCTATTAATCACATCGGTCATAGTCATCATCATCCTGCCTCAACGCCGAGAATGCCCTGTTTTGTTTGTAAAAATCANTTTTTGATTGGNATCCCGTCCCATTTAGTAGAAAAAGCCAATGATCTTGCCAGAAACGTGCTTGCGTCGGGCCTCCTCGTGGTCCATGATGCCAGCAGAGGTGGTGAGGATGACATAGCCGAACTGACGGGCAGGGAGCAACTTGACAACCCACTTCTCGAGCTCAGAGAGGCGCACGTTGTAGCGGGGAGAGATGACACCAGTCTTGTTGAGGCGGCCGTTGAGCTGGACAACGATCTTGCCG | |||||||||
gi|58664209|gb|CK052895.1|CK052895 63948rsicek_9370.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GCACGAGGCTGGCTCGTCGAGGTCGCCGAGGAGTACAAGCTCGTCTCCGACACGCTCTACCTCACCGTCTCCTACATCGACCGCTTCCTCTCCGCCAAAGCCATCAACCGCCAGAAGCTGCAGCTTCTCGGCGTCTCCGCCATGCTCATCGCCTCGAAGTATGAGGAGATCAGTCCCCCAAATGTGGAGGATTTCTGCTATATAACCGACAACACCTACATGAAACAGGAGGTTGTCAAGATGGAGCGCGATATACTGAATGTTCTCAAGTTTGAGATGGGCAATCCTACAACCAAGACGTTCCTGAGGATGTTCATCAGATCTAGCCAAGAAGACGATAAGTATCCTAGCCTTCCCTTGGAGTTCATGTGTAGCTATCTTGCCGAGCTGAGCCTGCTGGAGTATGGCTGTGTTCGGCTCTTGCCATCTGTTGTTGCAGCCTCGGTGGTGTTTGTTGCAAGGCTAACCCTTGATCCAGACACCAATCCTTGGAGCAAGAAGTTGCAAGAGGTGACCGGCTACAGGGCATCTGAGTTGAAG | |||||||||
gi|29669604|gb|CB665879.1|CB665879 OSJNEd12I15.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd12I15 3', mRNA sequence GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GGCCATGTCACAACTTGAGGTTGGACAGTTTGCAGTTGCAAGTTTCGGGAAAAAGGGAAATGTCAAAGTGCTACATGATTTCGATCAGGTCTTCAATGGAGAAGCAGGAACGAATATGATTTCTAGTTTGTCCTTTGAGCAAGACAACAAACTTGAGGATGAACCAGTTGCTGATCTCTTGATGCATCTGAACACAATGCTTGATACTGCCGTGGCACGGTCACGTACACCGTCAGGGCAAAATCCACTTCAGCAACTCGTACTAATAATATCTGACGGGAAGTTCCACGAAAAGGAAAATTTGAAGCGTTGCGTCAGGAATGTCCTTAACAGAAAGAGGATGATCGCATATGTGCTCCTAGATGGTCACGAGGAATCTATCATGGATTCACTGGAAGTATCCTATCAAGGTACCAAACTAACCATGGGGAAATATATGGACTCCTTTCCATTCCCTTACTATGTCATGCTGAAGAATATTGAAGCACTTCCTCGTACATTGGCTGACTTGCTTAGACAGTGGTTTGAGCTCATGCAGAGCGCTAATGAATGATCTTTTGGATGCTCATCAAAGTAACCGGAGGAAGAATGCCCTCGCGCCCATCACTGTAATTTGTGTATAGAATACTACCAAAATTTTGAGTCCCCTAGGCTTCTAGCTGCTTACACACTTTGGGTTAACAACTGTTCCAAGGCCTGAGCTGTGTACAAAATATACCACATTTCGTTGTAAACTGCATTTGAGAAATGCAAGCAATTTTGTAGCTACTACTCATGACTCATGAGCGTCTGGAAAGAAATTTCCTCTTC | |||||||||
gi|86845090|gb|CI341038.1|CI341038 CI341038 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GGAACATAATAATGTATTACCACAAATAACGTTGCAGAATACATAGTTCATGCAATTAGTATACCGTTAAACGGCTCAGGCCGCCGATCACCAACCAAGATTTCGTACCCCGGCTCACCGGAATCTTAAACAAGACAAAAATCCATATGGCCATATGGGCACACCAGATTCCTGATGAATCCTGGGACATTCTTTTTTAAGTCGTATACAAGGACAATGATGGGAATGGTTATTATCAACTCCATCGACATGACCTGACAAAAGAGTAATCAAACAAGAGAGTAGCTACCAGAAAATTGTGCAGGCATGGAATAGAAACCACCTGCCATACTACCTGGCATCGACGATAAATAGAGCTCTACATAATGGCGTCCTATCTCCCCTCACTC | |||||||||
gi|29645839|gb|CB650846.1|CB650846 OSJNEb15I14.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb15I14 5', mRNA sequence GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): CCTCTCTCCGCGCCTCCCTTCACCACCCGCATCGCCATCTCGCACCGCCACCTCCTCCACTCTCGGCGGCGGGGGCCTCATCGATGGCGTCCAGGATGGCGCTCCGGCCCAACGACGTCACGCTCCGCCTCACCCCGCCCCTCGCCGCCGCCGCGCGGCGCAACCGCCGCGCCGCCGCCGGCGGTGTCAGGGTCTACGCCGTCGCGTCCGGGGCCGTCTCCACCAAGGTTGAGAACAAAAAGCCATTTGCTCCTCCACGAGAGGTGCACGTCCAGGTTACACATTCCATGCCACCCCAGAAGATTGAAATATTCAAGTCTCTTGATGATTGGGCCAGAGATAATATTTTGTCCCACCTTAAGCCTGTCGAGAAATGTTGGCAACCACAGGATTTTCTTCCTGATCCAGCCTCAGATGGGTTTCATGATGAAGTCAAAGAACTTAGAGAACGTGCCAAGGAAATTCCTGATGATTATTTTGTTTGTTTGGTTGGAGACATGATTACGGAGGAAGCTCTTCCTACGTACCAGACTATGCTTAACACTCTCGATGGTGTCCGAGATGAAACAGGTGCAAGCCCCACTGCCTGGGCTGTTTGGACAAGGGCATGGACTGCTGAGGAGAACAGGCATGGTGACCTCCTGAACAAATATCTCTACCTCACTGGTAGGGTGGACATGAGACGAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGGACCCTAGGACAGACAACAATCCTTATCTTGGATTCATCTACACCTCCTTCCGAGAGCGTGCGACCTTCATCTCACATGGGAACACTGCTCGCCATGCCAAAGACTTTGGCGAC | |||||||||
gi|88314733|gb|CI608192.1|CI608192 CI608192 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): GACACTACTAGTCCTCTTCACCCCGCCGCTTCCACCAGATGGGCCGCAAGAGGAGGGCTAGGGTTTCCCGCGACGGCGACGGCGAGGAGGAGGAGGAGCCCGCGCCGGTCGCCGCAGAGAGCGAGAGCCTCTACGAGATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATCACAAGTTGGCCTTACGTCTTCATCCAGACAAGAATCCTGGAGATGAGGAAGCCAAGGAGAAATTTCAGCAGCTTCAGAAGGTGATATCTATTCTTGGGGATGAGGAGAAAAGGGCATTATATGATGAGACTGGAATTGCTGATGATGATGCACTGGTAGGAGAAGCTGCAGACAATCTTCAAGAGTACTTCAGAGCTGTTTACAAAAAGGTTACTGAGGCTGATATTGAAGAATTTGAAGCTAAGTACAGAGGGTCA | |||||||||
gi|89192175|gb|CI393532.1|CI393532 CI393532 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): ACCGTTAAACGGCTCAGGCCGCCGATTACCAACCAAGATTTCGTACCCCGGTCACCGGAATCTTAAACAAGACAAAAATCCATATGGCCATATGGGCACACCAGATTCCTGATGAATCCTGGGACATTCTTTTTTAACTCGTATACAACGACAATGATGCCAATATTATTATCAACTCCATCGACATCACCTGAAAAAACAGTAATCAAACAACACAGTAGCTACCAGAAAATTGTGCAGGCATGGAATAGAAACCACCTGCCATACTACATGGCATCGACGATAAATAGAGCTCTACATAATGGAGTTCTATCTCTCCTCATTTTACCAGCAAATCTATGTAACGAAAGGCACCCTGCGAACTGCAGGGGCTGATACGGTAATTAAATTGTCTCCCAAAGATGGACTATGGGAGTAAAAACAAGCATAGCAGTTTTTGTTTTGCCACTTAACCCAGCAAA | |||||||||
gi|60672980|gb|DN475669.1|DN475669 trse241 Rice SMART cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence GGATTGTTGTCTGGTTCAAGG EST sequence (targeted fragment marked with yellow): CTCAGGCTCCTCACAACCACATACATGCACAAATCTTCCCACAACAATCAGCCACAACGCAACAAACTCCAGCAGAGATCACAAAGCAAGGGCCCCGTTTGAAGCGTGCCCCTCGTTGGTTTTAATACCTGAGGAAATTCCGAGCCCNTCCCACGGGACCGTTTAACCAGACAACCATCCGGCCACACCACTGGCTCGCCACGCACTATAAATAGGCAACGCACTCCAACCGCGAGCAGCATAGGAANGATAAGAAGAGATCAGAGACCAAGTTCAGGACGGTTAACNCGCCCAGATCACTTTGCCCGACCCCCCCTCCACGACGAGCCTCCCGCCACACGCCTCCCACATACCGNCTCGACCCATCCGCACTACATGCCGACCCCTAAACCAATGTACCCAGGACACGTCGTCCAGACGCTTAGCCGCCACCATTCCTATACACCGGCCCCGCCCTTCCCCACCTACTACCGCAAGCATACCACGAACGGGCCAACTCGCCGCCACAGCACCCACTCGACAGCCAAGCCTCCCCCCACTTATCCCCGAACAGTCTCTACCAGCATTCCACCCAACGCCGACCACCCTCAGCGAGCGACTTCTCCACGGCGCCAAACGCCCCGCACTCTCCACACCACAACACCCAGGACTCCAGCCACCACCCACACCANCGCAATCACCCCGGCCGCCACCA | |||||||||