| mature miRNA: GGCAAGTCATCCTTGGCTGCA species: Populus tremula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38595395|gb|CK111070.1|CK111070 Q008F03 Populus dormant bud cDNA library Populus tremula cDNA clone Q008F03 5', mRNA sequence GGCAAGTCATCCTTGGCTGCA EST sequence (targeted fragment marked with yellow): TTCGGCCTTTACGGCCGGGGAGCTTTGCATTGTAACAGATGGCTCCATCTTTTGTATTAATCGAAGGAAGGTACTGAAGAGAGATCCAACATGAAGATAAAGAGTCTTGTTTGGTAGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCAAGAACACGAGCATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCGCGCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGCTAGAATCCTCATGAGGTTCACAGCAAGTGTCCTTGGCTAACGAGACGGGCTCTTATCTTTCATGTTGGATCTGTTCTTCGTGTGCTCTGCTGGGCAAGTTTTTGATCAGAAGTCGCTTTGGAAGAGACGATGTATCCAGCTAGCTTCCAAGAGGTATATGCTCTTCGTGTGCTCTACAATTTATTTGATTTGTTTCCTTTTAAAATAGAGCCATAGCTCCTCTGTATTCTCTTACGGCGGCTACTTTACATGACAGCAATATACCACAGGGTT | |||||||||
gi|24056074|gb|BU865420.1|BU865420 S053D10 Populus imbibed seed cDNA library Populus tremula cDNA 5 prime, mRNA sequence GGCAAGTCATCCTTGGCTGCA EST sequence (targeted fragment marked with yellow): CTTACGGCCGGGGATCCAATCCTTCTTCTTGATATTCACCACAGAAAAACTCTCTTTTTATCCTTCCATCTCTCCTTCTAAAGCCTCCAGGACAAGGTGTCGTTCTTGCTTCAGTTGCTGTCTCACTGTAGCGGCCTTGCATGGAGGCTCATAAAGTTTGATGCAGCCAAGGATGATTTGCCGACGACTCAGTTTTTGCTTCCATATGGTAGGAGAGATGAAGAGGTTGGCAGGTTTTCCTTGGCTACATTTTCCTTTCTGCTCCTCATGCTAGGTTTATGGTGATGATCCTTATAACTTGTAAGGAGCTCCTTGAAGAACACTACTGCTTCTCTGCAAGAAAAATCATTGTAATGAAAACATTATATCTCATTACTGTTACATATATATGCTACTTTATGGATCGACTAGGGCTTCTAGGCTTCCTCCCTCTAACAAAATCTCCACGCATAAACTTGAGGAATAATTTTAAATTCCAGTAAACCTCCTAGTTTTTTCTATTTAGATATAAATCAATCA | |||||||||
gi|60708501|gb|DN498311.1|DN498311 S016A03.5pR Populus imbibed seed cDNA library Populus tremula cDNA clone S016A03 5', mRNA seq GGCAAGTCATCCTTGGCTGCA EST sequence (targeted fragment marked with yellow): GGTCCCATCTTTCTCCTCTATCTTCCCATCCTCCCCAGCTCTCCTTCTACGTCTGCAAATTAAGCAAAGTGTCCCTGTTTCTTGCTTCAGTTGCTGTAGTTTCACTGTAACAGCCTTCCATGGAGGATCATAAAGATTGATGCAGCCAAGGATGACTTGCCGACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAGAGATGAATCCGTTGGCAGGTTGTTCTTGGCTACATTTTTCTTTCTGCTCCTCATGCCAAGCTTATGGTGATTATCCTGTGAACTTGCAAGGATCGCCTTCAAGATCACTGCTTCACTGATATGAAAATCATATGGTAATGTAATATAATATCATCAACATGGAAATTAACCTCCAGTTGTTATCTTCTTAATCTCCCTCTTAATACATGGAAATCATGATTATCATGAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||